Cellulosome Database Search

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Genome ifo

Batch2_genome_fasta/M.radiotolerans.GTSA1: Methylobacterium radiotolerans, GTSA1 [-] (ncbi)

Genbanks info:

Genbank_acc: PaGL#34_02504
Genome uid: 377
2557188-2558582 [+] (464)

Sequence:

AASQNALPGSAMAGILRDAALYALVTFGLCVPIIAFRTDPGPGTELVLVPRWGLVAALCAAIFVLRLVQRLVLLRRDARR
ALTPAPAQATEAVHGEPDAGQKTSKVGLWLFIFVALTLPMISALATGGLSSARYWIDLGILILTYVMLGWGLNIVVGLAG
LLDLGYVAFYAVGAYSYALLSTTFGLSFWVCLPLAGLFAGLWGMILGFPVLRLRGDYLAIVTLAFGEIIRLVLINWTDVT
GGGAGISSIPRATFFGIPFTAGEGGFAATFGIPYDSMHRLVFLYYLILALALITNFVTLRLRRLPIGRAWEALREDEIAC
RSLGIDTTATKLTAFALGAAFGGFAGSFFAVRQGFISPESFNFLESAIILAIVVLGGMGSQVGVAIAAVAMVGGPEMLRN
LGFLKAVFGEGFDPSEYRLLLFGLAMVAMMVWRPRGLISERMPSVSLGQRRAVSGAHVSEGHG

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	0	19			3361949	1618329	18	136:Membrane Protein	0	0	0	3038	0	1
2	DeepTMHMM:inside		inside	1	19			3393773	1618329	9730	0	0	0	3038	0	2
3	PFAM:PF11862	IPR021807	Domain of unknown function (DUF3382)	15	117	67.3	1.1E-18	3361947	1618329	12791	0	0	0	3038	0	3
4	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	19	37			3361971	1618329	5	136:Membrane Protein	0	0	0	3038	0	4
5	DeepTMHMM:TMhelix		TMhelix	20	29			3393774	1618329	2056	141:DeepTMHMM: helix	0	0	0	3038	6	5
6	DeepTMHMM:outside		outside	30	55			3393775	1618329	10025	0	0	0	3038	0	6
7	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	37	48			3361959	1618329	3	136:Membrane Protein	0	0	0	3038	0	7
8	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	48	69			3361963	1618329	5	136:Membrane Protein	0	0	0	3038	0	8
9	DeepTMHMM:TMhelix		TMhelix	56	69			3393776	1618329	2056	141:DeepTMHMM: helix	0	0	0	3038	6	9
10	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	69	106			3361952	1618329	18	136:Membrane Protein	0	0	0	3038	0	10
11	DeepTMHMM:inside		inside	70	106			3393777	1618329	9730	0	0	0	3038	0	11
12	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	106	127			3361962	1618329	5	136:Membrane Protein	0	0	0	3038	0	12
13	DeepTMHMM:TMhelix		TMhelix	107	122			3393778	1618329	2056	141:DeepTMHMM: helix	0	0	0	3038	6	13
14	DeepTMHMM:outside		outside	123	136			3393779	1618329	10025	0	0	0	3038	0	14
15	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	127	132			3361957	1618329	3	136:Membrane Protein	0	0	0	3038	0	15
16	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	132	153			3361964	1618329	5	136:Membrane Protein	0	0	0	3038	0	16
17	DeepTMHMM:TMhelix		TMhelix	137	152			3393780	1618329	2056	141:DeepTMHMM: helix	0	0	0	3038	6	17
18	PFAM:PF02653	IPR001851	Branched-chain amino acid transport system / permease component	140	431	173	0	3361946	1618329	154	0	0	0	3038	0	18
19	CDD:cd06581	IPR043428	TM_PBP1_LivM_like	142	440			3361973	1618329	2781	0	0	0	3038	0	19
20	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	153	159			3361954	1618329	18	136:Membrane Protein	0	0	0	3038	0	20
21	DeepTMHMM:inside		inside	153	162			3393781	1618329	9730	0	0	0	3038	0	21
22	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	159	181			3361961	1618329	5	136:Membrane Protein	0	0	0	3038	0	22
23	DeepTMHMM:TMhelix		TMhelix	163	178			3393782	1618329	2056	141:DeepTMHMM: helix	0	0	0	3038	6	23
24	DeepTMHMM:outside		outside	179	190			3393783	1618329	10025	0	0	0	3038	0	24
25	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	181	186			3361958	1618329	3	136:Membrane Protein	0	0	0	3038	0	25
26	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	186	206			3361965	1618329	5	136:Membrane Protein	0	0	0	3038	0	26
27	DeepTMHMM:TMhelix		TMhelix	191	209			3393784	1618329	2056	141:DeepTMHMM: helix	0	0	0	3038	6	27
28	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	206	217			3361948	1618329	18	136:Membrane Protein	0	0	0	3038	0	28
29	DeepTMHMM:inside		inside	210	218			3393785	1618329	9730	0	0	0	3038	0	29
30	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	217	238			3361968	1618329	5	136:Membrane Protein	0	0	0	3038	0	30
31	DeepTMHMM:TMhelix		TMhelix	219	234			3393786	1618329	2056	141:DeepTMHMM: helix	0	0	0	3038	6	31
32	DeepTMHMM:outside		outside	235	286			3393787	1618329	10025	0	0	0	3038	0	32
33	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	238	249			3361956	1618329	3	136:Membrane Protein	0	0	0	3038	0	33
34	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	249	271			3361966	1618329	5	136:Membrane Protein	0	0	0	3038	0	34
35	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	271	282			3361951	1618329	18	136:Membrane Protein	0	0	0	3038	0	35
36	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	282	302			3361967	1618329	5	136:Membrane Protein	0	0	0	3038	0	36
37	DeepTMHMM:TMhelix		TMhelix	287	298			3393788	1618329	2056	141:DeepTMHMM: helix	0	0	0	3038	6	37
38	DeepTMHMM:inside		inside	299	332			3393789	1618329	9730	0	0	0	3038	0	38
39	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	302	332			3361955	1618329	3	136:Membrane Protein	0	0	0	3038	0	39
40	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	332	352			3361970	1618329	5	136:Membrane Protein	0	0	0	3038	0	40
41	DeepTMHMM:TMhelix		TMhelix	333	352			3393790	1618329	2056	141:DeepTMHMM: helix	0	0	0	3038	6	41
42	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	352	363			3361950	1618329	18	136:Membrane Protein	0	0	0	3038	0	42
43	DeepTMHMM:outside		outside	353	367			3393791	1618329	10025	0	0	0	3038	0	43
44	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	363	396			3361969	1618329	5	136:Membrane Protein	0	0	0	3038	0	44
45	DeepTMHMM:TMhelix		TMhelix	368	377			3393792	1618329	2056	141:DeepTMHMM: helix	0	0	0	3038	6	45
46	DeepTMHMM:inside		inside	378	385			3393793	1618329	9730	0	0	0	3038	0	46
47	DeepTMHMM:TMhelix		TMhelix	386	399			3393794	1618329	2056	141:DeepTMHMM: helix	0	0	0	3038	6	47
48	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	396	415			3361960	1618329	3	136:Membrane Protein	0	0	0	3038	0	48
49	DeepTMHMM:outside		outside	400	420			3393795	1618329	10025	0	0	0	3038	0	49
50	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	415	433			3361972	1618329	5	136:Membrane Protein	0	0	0	3038	0	50
51	DeepTMHMM:TMhelix		TMhelix	421	432			3393796	1618329	2056	141:DeepTMHMM: helix	0	0	0	3038	6	51
52	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	433	464			3361953	1618329	18	136:Membrane Protein	0	0	0	3038	0	52
53	DeepTMHMM:inside		inside	433	464			3393797	1618329	9730	0	0	0	3038	0	53

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