Cellulosome Database Search

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Genome ifo

Batch2_genome_fasta/V.boronicumulans: Variovorax sp., EBFNA2 [-] (ncbi)

Genbanks info:

Genbank_acc: PaGL#33_00473
Genome uid: 380
518666-520582 [+] (638)

Sequence:

TDASITASRPFPIDLVSAPKNISAGLIVGAIGVVYGDIGTSVLYAVKEVFGHGHVPFTVENVYGILSMFFWTLTVIVSIK
YVVLVLRADNEGEGGLVAMLALASQAVTDKPRLRQLLLIVGIFGTSLFYGDGVITPAISVLSAVEGLEVVSPHFKHYVIP
ITLVVLFCLFAVQKRGTAGIGKFFGPITLAWFAAIAVLGVWQIAHHPEIIKALNPWFALKFIWDNPGTSFILLGAMVLCV
TGAEALYADLGHFGKKPIRIAWFSVVMPALTLNYLGQGALLLENPEAVKNPFFMMAPEWALIPLVLLATLSTVIASQALI
TGAFSVTRQVIQLGYLPRLNIEHTSVRTAGQIYIPLVNWGLFVAIVLAVVMFRTSSSLAAAYGIAVTTDMLITTILTFFV
IRYAWKLPLALCIGATAIFFVVDFLFFASNLLKLFEGGWFPLLIGGAVFTLMITWKEGRRLMGEAQHADAIDLKSFLGSV
FMSPPARVDGTAVFLTAEPGVVPNALLHNLKHNKVLHEQNMFVTVRNHEVPWIPMDKRIEIDALGNHCWQVIVHYGFKND
IDLPRALDNARMRGCQLEPMTTSYFLSRDVVIPTLGSGMAPWREKLFAQMHHNASGAAAFLGLPNNAVVELGSKIEI

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	0	24			3592976	1636684	18	136:Membrane Protein	0	0	0	916	0	1
2	DeepTMHMM:inside		inside	1	25			3632448	1636684	9730	0	0	0	916	0	2
3	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	24	46			3592963	1636684	5	136:Membrane Protein	0	0	0	916	0	3
4	DeepTMHMM:TMhelix		TMhelix	26	46			3632449	1636684	2056	141:DeepTMHMM: helix	0	0	0	916	6	4
5	PFAM:PF02705	IPR003855	K+ potassium transporter	28	559	700.3	0	3592957	1636684	6622	0	0	0	916	0	5
6	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	46	65			3592974	1636684	3	136:Membrane Protein	0	0	0	916	0	6
7	DeepTMHMM:outside		outside	47	64			3632450	1636684	10025	0	0	0	916	0	7
8	DeepTMHMM:TMhelix		TMhelix	65	80			3632451	1636684	2056	141:DeepTMHMM: helix	0	0	0	916	6	8
9	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	65	87			3592967	1636684	5	136:Membrane Protein	0	0	0	916	0	9
10	DeepTMHMM:inside		inside	81	116			3632452	1636684	9730	0	0	0	916	0	10
11	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	87	116			3592981	1636684	18	136:Membrane Protein	0	0	0	916	0	11
12	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	116	143			3592958	1636684	5	136:Membrane Protein	0	0	0	916	0	12
13	DeepTMHMM:TMhelix		TMhelix	117	142			3632453	1636684	2056	141:DeepTMHMM: helix	0	0	0	916	6	13
14	DeepTMHMM:outside		outside	143	157			3632454	1636684	10025	0	0	0	916	0	14
15	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	143	154			3592973	1636684	3	136:Membrane Protein	0	0	0	916	0	15
16	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	154	173			3592965	1636684	5	136:Membrane Protein	0	0	0	916	0	16
17	DeepTMHMM:TMhelix		TMhelix	158	173			3632455	1636684	2056	141:DeepTMHMM: helix	0	0	0	916	6	17
18	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	173	184			3592977	1636684	18	136:Membrane Protein	0	0	0	916	0	18
19	DeepTMHMM:inside		inside	174	183			3632456	1636684	9730	0	0	0	916	0	19
20	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	184	205			3592968	1636684	5	136:Membrane Protein	0	0	0	916	0	20
21	DeepTMHMM:TMhelix		TMhelix	184	205			3632457	1636684	2056	141:DeepTMHMM: helix	0	0	0	916	6	21
22	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	205	229			3592972	1636684	3	136:Membrane Protein	0	0	0	916	0	22
23	DeepTMHMM:outside		outside	206	228			3632458	1636684	10025	0	0	0	916	0	23
24	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	229	249			3592960	1636684	5	136:Membrane Protein	0	0	0	916	0	24
25	DeepTMHMM:TMhelix		TMhelix	229	249			3632459	1636684	2056	141:DeepTMHMM: helix	0	0	0	916	6	25
26	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	249	260			3592982	1636684	18	136:Membrane Protein	0	0	0	916	0	26
27	DeepTMHMM:inside		inside	250	260			3632460	1636684	9730	0	0	0	916	0	27
28	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	260	281			3592966	1636684	5	136:Membrane Protein	0	0	0	916	0	28
29	DeepTMHMM:TMhelix		TMhelix	261	281			3632461	1636684	2056	141:DeepTMHMM: helix	0	0	0	916	6	29
30	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	281	300			3592970	1636684	3	136:Membrane Protein	0	0	0	916	0	30
31	DeepTMHMM:outside		outside	282	302			3632462	1636684	10025	0	0	0	916	0	31
32	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	300	332			3592959	1636684	5	136:Membrane Protein	0	0	0	916	0	32
33	DeepTMHMM:TMhelix		TMhelix	303	325			3632463	1636684	2056	141:DeepTMHMM: helix	0	0	0	916	6	33
34	DeepTMHMM:inside		inside	326	352			3632464	1636684	9730	0	0	0	916	0	34
35	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	332	352			3592980	1636684	18	136:Membrane Protein	0	0	0	916	0	35
36	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	352	373			3592969	1636684	5	136:Membrane Protein	0	0	0	916	0	36
37	DeepTMHMM:TMhelix		TMhelix	353	373			3632465	1636684	2056	141:DeepTMHMM: helix	0	0	0	916	6	37
38	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	373	378			3592971	1636684	3	136:Membrane Protein	0	0	0	916	0	38
39	DeepTMHMM:outside		outside	374	381			3632466	1636684	10025	0	0	0	916	0	39
40	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	378	402			3592962	1636684	5	136:Membrane Protein	0	0	0	916	0	40
41	DeepTMHMM:TMhelix		TMhelix	382	402			3632467	1636684	2056	141:DeepTMHMM: helix	0	0	0	916	6	41
42	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	402	408			3592978	1636684	18	136:Membrane Protein	0	0	0	916	0	42
43	DeepTMHMM:inside		inside	403	409			3632468	1636684	9730	0	0	0	916	0	43
44	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	408	433			3592961	1636684	5	136:Membrane Protein	0	0	0	916	0	44
45	DeepTMHMM:TMhelix		TMhelix	410	433			3632469	1636684	2056	141:DeepTMHMM: helix	0	0	0	916	6	45
46	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	433	438			3592975	1636684	3	136:Membrane Protein	0	0	0	916	0	46
47	DeepTMHMM:outside		outside	434	438			3632470	1636684	10025	0	0	0	916	0	47
48	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	438	456			3592964	1636684	5	136:Membrane Protein	0	0	0	916	0	48
49	DeepTMHMM:TMhelix		TMhelix	439	454			3632471	1636684	2056	141:DeepTMHMM: helix	0	0	0	916	6	49
50	DeepTMHMM:inside		inside	455	638			3632472	1636684	9730	0	0	0	916	0	50
51	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	456	638			3592979	1636684	18	136:Membrane Protein	0	0	0	916	0	51

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