Cellulosome Database Search

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Genome ifo

Batch2_genome_fasta/V.boronicumulans: Variovorax sp., EBFNA2 [-] (ncbi)

Genbanks info:

Genbank_acc: PaGL#33_01034
Genome uid: 380
1163215-1165317 [+] (700)

Sequence:

ARILARRKAASVLVGCLAIYAQQHVLAQTQTSGAGSLPEVRVDANAEVETATTPVIGYRAKNAVTATKTDTPLSETPQSV
TVITRDQMVDQGATNLQEALNYAAGVRSDAYGVDSRTDSIRVRGAYPDIYLDGLRQAYGYYTSTTRTEPYTLERLEVLRG
PSGMLFGAGTAAGVVNMVSKRPLQEAQREVGVQFGSFGRKQVQADLTGPLNADGSLSYRLIALQRKSDSQVDYVPDDRSV
IAPSLTWRPNAATSLTLQGLWQKDKSGSSSQFLPWEGTLLPAPFGRVPASRFIGEPGDYYNSERQTFGWQFEHKFNDSWT
VRQNFRYAKNENDNRYHYGGAFSGFDSWSTDPIFKRVLARYYDSQLTRNRTQTLDNHVEGHFQTGALKHTLLIGADYARQ
RENVWGGTTADTIDIYAPVYGHLDEPERVARPRTRQRQTGLYLQDQIKLDNWIFVAGLRHDRAVSSAVGSDEQKSSATTK
RLGVMYAHPSGWSPYLSYSESFTPQSPRDGRIFSPLRGEQWEAGVKYEPKDRALAFSAAVYDLREKNQIVEEQPKVFSQR
GLTKTKGVELEAKGSVGANLDLVAHYNYTDADAQIEGLPKHQASFWAKYKFSVAGMSGFSAGAGVRVMSSFRDTQFGTGP
RIPGVALADLVFAYDTANWRYALNINNVTDKVYFSTCLSRGDCWYGARRNIVASATYRF

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:SIGNAL_PEPTIDE		Signal peptide region	0	28			3576697	1637616	19	135:all secretion /signal peptide, lipo	0	0	0	1848	3	1
2	PHOBIUS:SIGNAL_PEPTIDE_N_REGION		N-terminal region of a signal peptide.	0	9			3576698	1637616	21	135:all secretion /signal peptide, lipo	0	0	0	1848	3	2
3	DeepTMHMM:signal		signal	1	13			3623180	1637616	2198	0	0	0	1848	0	3
4	PHOBIUS:SIGNAL_PEPTIDE_H_REGION		Hydrophobic region of a signal peptide.	9	20			3576696	1637616	24	135:all secretion /signal peptide, lipo	0	0	0	1848	3	4
5	DeepTMHMM:periplasm		periplasm	14	188			3623181	1637616	10164	0	0	0	1848	0	5
6	PHOBIUS:SIGNAL_PEPTIDE_C_REGION		C-terminal region of a signal peptide.	20	28			3576695	1637616	26	135:all secretion /signal peptide, lipo	0	0	0	1848	3	6
7	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	28	700			3576694	1637616	3	136:Membrane Protein	0	0	0	1848	0	7
8	SIGNALP6:SP		SP	28	29	0		3622004	1637616	1978	135:all secretion /signal peptide, lipo	0	0	0	1848	3	8
9	SUPERFAMILY:SSF56935		-	37	700			3576700	1637616	12	0	0	0	1848	0	9
10	PFAM:PF07715	IPR012910	TonB-dependent Receptor Plug Domain	73	175	77.7	9.2E-22	3576692	1637616	10797	0	0	0	1848	0	10
11	CDD:cd01347		ligand_gated_channel	79	700			3576699	1637616	9770	0	0	0	1848	0	11
12	DeepTMHMM:Beta sheet		Beta sheet	189	196			3623182	1637616	8858	0	0	0	1848	0	12
13	DeepTMHMM:outside		outside	197	200			3623183	1637616	10025	0	0	0	1848	0	13
14	DeepTMHMM:Beta sheet		Beta sheet	201	208			3623184	1637616	8858	0	0	0	1848	0	14
15	DeepTMHMM:periplasm		periplasm	209	218			3623185	1637616	10164	0	0	0	1848	0	15
16	DeepTMHMM:Beta sheet		Beta sheet	219	226			3623186	1637616	8858	0	0	0	1848	0	16
17	DeepTMHMM:outside		outside	227	239			3623187	1637616	10025	0	0	0	1848	0	17
18	DeepTMHMM:Beta sheet		Beta sheet	240	248			3623188	1637616	8858	0	0	0	1848	0	18
19	DeepTMHMM:periplasm		periplasm	249	254			3623189	1637616	10164	0	0	0	1848	0	19
20	DeepTMHMM:Beta sheet		Beta sheet	255	263			3623190	1637616	8858	0	0	0	1848	0	20
21	DeepTMHMM:outside		outside	264	306			3623191	1637616	10025	0	0	0	1848	0	21
22	PFAM:PF00593	IPR000531	TonB dependent receptor	273	699	178.8	0	3576693	1637616	10796	0	0	0	1848	0	22
23	DeepTMHMM:Beta sheet		Beta sheet	307	313			3623192	1637616	8858	0	0	0	1848	0	23
24	DeepTMHMM:periplasm		periplasm	314	321			3623193	1637616	10164	0	0	0	1848	0	24
25	DeepTMHMM:Beta sheet		Beta sheet	322	329			3623194	1637616	8858	0	0	0	1848	0	25
26	DeepTMHMM:outside		outside	330	373			3623195	1637616	10025	0	0	0	1848	0	26
27	DeepTMHMM:Beta sheet		Beta sheet	374	381			3623196	1637616	8858	0	0	0	1848	0	27
28	DeepTMHMM:periplasm		periplasm	382	390			3623197	1637616	10164	0	0	0	1848	0	28
29	DeepTMHMM:Beta sheet		Beta sheet	391	398			3623198	1637616	8858	0	0	0	1848	0	29
30	DeepTMHMM:outside		outside	399	440			3623199	1637616	10025	0	0	0	1848	0	30
31	DeepTMHMM:Beta sheet		Beta sheet	441	449			3623200	1637616	8858	0	0	0	1848	0	31
32	DeepTMHMM:periplasm		periplasm	450	452			3623201	1637616	10164	0	0	0	1848	0	32
33	DeepTMHMM:Beta sheet		Beta sheet	453	460			3623202	1637616	8858	0	0	0	1848	0	33
34	DeepTMHMM:outside		outside	461	480			3623203	1637616	10025	0	0	0	1848	0	34
35	DeepTMHMM:Beta sheet		Beta sheet	481	488			3623204	1637616	8858	0	0	0	1848	0	35
36	DeepTMHMM:periplasm		periplasm	489	492			3623205	1637616	10164	0	0	0	1848	0	36
37	DeepTMHMM:Beta sheet		Beta sheet	493	500			3623206	1637616	8858	0	0	0	1848	0	37
38	DeepTMHMM:outside		outside	501	521			3623207	1637616	10025	0	0	0	1848	0	38
39	DeepTMHMM:Beta sheet		Beta sheet	522	529			3623208	1637616	8858	0	0	0	1848	0	39
40	DeepTMHMM:periplasm		periplasm	530	534			3623209	1637616	10164	0	0	0	1848	0	40
41	DeepTMHMM:Beta sheet		Beta sheet	535	542			3623210	1637616	8858	0	0	0	1848	0	41
42	DeepTMHMM:outside		outside	543	568			3623211	1637616	10025	0	0	0	1848	0	42
43	DeepTMHMM:Beta sheet		Beta sheet	569	575			3623212	1637616	8858	0	0	0	1848	0	43
44	DeepTMHMM:periplasm		periplasm	576	580			3623213	1637616	10164	0	0	0	1848	0	44
45	DeepTMHMM:Beta sheet		Beta sheet	581	587			3623214	1637616	8858	0	0	0	1848	0	45
46	DeepTMHMM:outside		outside	588	603			3623215	1637616	10025	0	0	0	1848	0	46
47	DeepTMHMM:Beta sheet		Beta sheet	604	610			3623216	1637616	8858	0	0	0	1848	0	47
48	DeepTMHMM:periplasm		periplasm	611	619			3623217	1637616	10164	0	0	0	1848	0	48
49	DeepTMHMM:Beta sheet		Beta sheet	620	628			3623218	1637616	8858	0	0	0	1848	0	49
50	DeepTMHMM:outside		outside	629	648			3623219	1637616	10025	0	0	0	1848	0	50
51	DeepTMHMM:Beta sheet		Beta sheet	649	655			3623220	1637616	8858	0	0	0	1848	0	51
52	DeepTMHMM:periplasm		periplasm	656	659			3623221	1637616	10164	0	0	0	1848	0	52
53	DeepTMHMM:Beta sheet		Beta sheet	660	667			3623222	1637616	8858	0	0	0	1848	0	53
54	DeepTMHMM:outside		outside	668	691			3623223	1637616	10025	0	0	0	1848	0	54
55	DeepTMHMM:Beta sheet		Beta sheet	692	698			3623224	1637616	8858	0	0	0	1848	0	55
56	DeepTMHMM:periplasm		periplasm	699	700			3623225	1637616	10164	0	0	0	1848	0	56

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