Cellulosome Database Search

This page is just for checking and is not meant to be part of the public site.

We will take the links to it out when ready.

Genome ifo

Batch2_genome_fasta/V.boronicumulans: Variovorax sp., EBFNA2 [-] (ncbi)

Genbanks info:

Genbank_acc: PaGL#33_02492
Genome uid: 380
2683662-2684657 [+] (331)

Sequence:

KKCLMSWRRATALCIAMGCAVTASAQVQQFKWGHIYEPASIFHQQAELAARKIAEQSDGKIKIEVVAASKLGQERDYALM
LANDSMQIAYVGQATLAEGYPPLGLGSYPFAFKDLDHVRKYLASPLLADLMKGYNERSGNRMVASVYYGARQVTSGKPLQ
RPEDFRDLRLYVPDAAAYQLFATALDAKPVSLPFNSLYGALKKNEVEAQEHPLGTVRAKQLYEVQKYVQLTGHIYDTLGI
VIGKAAWARLTPPQQAMVEKTLADTAKWTNVGVIASELEDEQFLRSKGMTVQPVNRLPLLERVAKRSTPEQMGARPGDFA
KLQALAGTSH

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:SIGNAL_PEPTIDE_N_REGION		N-terminal region of a signal peptide.	0	10			3584608	1639065	21	135:all secretion /signal peptide, lipo	0	0	0	3297	3	1
2	PHOBIUS:SIGNAL_PEPTIDE		Signal peptide region	0	26			3584609	1639065	19	135:all secretion /signal peptide, lipo	0	0	0	3297	3	2
3	PHOBIUS:SIGNAL_PEPTIDE_H_REGION		Hydrophobic region of a signal peptide.	10	22			3584612	1639065	24	135:all secretion /signal peptide, lipo	0	0	0	3297	3	3
4	PHOBIUS:SIGNAL_PEPTIDE_C_REGION		C-terminal region of a signal peptide.	22	26			3584610	1639065	26	135:all secretion /signal peptide, lipo	0	0	0	3297	3	4
5	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	26	331			3584611	1639065	3	136:Membrane Protein	0	0	0	3297	0	5
6	SIGNALP6:SP		SP	26	27	0		3622231	1639065	1978	135:all secretion /signal peptide, lipo	0	0	0	3297	3	6
7	CDD:cd13672		PBP2_TRAP_Siap	29	324			3584613	1639065	10116	0	0	0	3297	0	7
8	PFAM:PF03480	IPR018389	Bacterial extracellular solute-binding protein, family 7	33	295	186.6	0	3584607	1639065	4956	0	0	0	3297	0	8

↑ Top