Cellulosome Database Search

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Genome ifo

Batch2_genome_fasta/V.paradoxus: Variovorax paradoxus, 2u118 [-] (ncbi)

Genbanks info:

Genbank_acc: PaGL#32_01929
Genome uid: 381
2067096-2069537 [+] (813)

Sequence:

QFPESWLREFCNPPLGSAELAETLTMGGFEVEERRPVAPPFSRIVVGEIKEAVQHPNADRLRVCQVDAGQGALLNIVCGA
PNARVGIKVPCALVGAELPPGEDGKPFLIKLGKLRGVESQGMLCSARELKLSEDHGGLLELDADAPIGADVRDVLKLDDA
LLTLKLTPNLAHGLSVYGVARELSALTGAPLKTPAIAPVAASFADVLPVKVEAPELCGRFSGRIVRGVNTQVATPAWMVD
RLARCGQRSVTPLVDISNYVMFEYGQPSHIFDLDKIHGGLTVRWGKAGEQLKLLNGNTIGVDDKVGVIADDQAVESLAGI
MGGDATSVSDDTRNIYVEAAFWWPEAVQGRSRRFNFSTDAGHRYERGVDPSRTVEIIERITQLIIEICGGQAGAMDDKIL
NVPEAMPVTLRVARAARVIGMPLTQAQCADALRRLGFALREGEGTLTVTPPPHRFDLLIEEDLIEEVARLIGFNNLPTNA
PLAPITARVRPEARRSRFAVRRSLAALGYQETINFSFVEAHWEQDLAGNANPVKLLNPIASQMSVMRSSLLGSLLQVLKF
NLDRKAPRVRVFEVGRVFMRDDSVATTDSTVRGVDQPMRVAGLAWGDAEEARWDGKPQRVDFYDAKGDVEALLAPRVASF
EPAEHPALHPGRSARVLVDGKAIGFIGELHPRWRQKWDFALAPVLFELDLDAVAARPVPVARPVPKHQAVERDIAVVVAE
AVTHNALMQAIQSAAAGQGLLRDATLFDIYRPQPVRDGAVPASGGLAQGEKSMAVRLSFQDDSATLTDEQVEPAVRAIVE
QLSAKLGARLRG

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	SUPERFAMILY:SSF50249	IPR012340	Nucleic acid-binding, OB-fold	37	202			3712485	1647110	405	0	0	0	3151	0	1
2	PROSITE_PROFILES:PS50886	IPR002547	tRNA-binding domain profile.	38	153			3712478	1647110	1804	0	0	0	3151	0	2
3	CDD:cd02796	IPR033714	tRNA_bind_bactPheRS	44	152			3712480	1647110	2679	0	0	0	3151	0	3
4	PFAM:PF01588	IPR002547	Putative tRNA binding domain	44	150	82.1	2.3E-23	3712474	1647110	1799	0	0	0	3151	0	4
5	SUPERFAMILY:SSF56037		-	200	395			3712481	1647110	12	0	0	0	3151	0	5
6	SMART:SM00873	IPR005146		216	390			3712469	1647110	1	0	0	0	3151	0	6
7	PFAM:PF03483	IPR005146	B3/4 domain	217	390	198.8	0	3712472	1647110	2672	0	0	0	3151	0	7
8	PROSITE_PROFILES:PS51483	IPR005147	B5 domain profile.	403	479			3712477	1647110	2677	0	0	0	3151	0	8
9	SMART:SM00874	IPR005147		405	474			3712468	1647110	1	0	0	0	3151	0	9
10	SUPERFAMILY:SSF46955	IPR009061	Putative DNA-binding domain superfamily	406	478			3712483	1647110	1678	0	0	0	3151	0	10
11	PFAM:PF03484	IPR005147	tRNA synthetase B5 domain	408	474	69.4	2.3E-19	3712471	1647110	2673	0	0	0	3151	0	11
12	SUPERFAMILY:SSF55681	IPR045864	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	469	695			3712484	1647110	115	0	0	0	3151	0	12
13	PFAM:PF17759	IPR041616	Phenylalanyl tRNA synthetase beta chain CLM domain	476	691	195.5	0	3712473	1647110	2674	0	0	0	3151	0	13
14	CDD:cd00769	IPR041616	PheRS_beta_core	499	694			3712479	1647110	2678	0	0	0	3151	0	14
15	SUPERFAMILY:SSF54991	IPR036690	Ferrodoxin-fold anticodon-binding domain superfamily	700	812			3712482	1647110	2680	0	0	0	3151	0	15
16	PFAM:PF03147	IPR005121	Ferredoxin-fold anticodon binding domain	705	812	93.2	1.0E-26	3712475	1647110	2675	0	0	0	3151	0	16
17	PROSITE_PROFILES:PS51447	IPR005121	Ferredoxin-fold anticodon binding (FDX-ACB) domain profile.	705	812			3712476	1647110	2676	0	0	0	3151	0	17
18	SMART:SM00896	IPR005121		705	812			3712470	1647110	1	0	0	0	3151	0	18

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