Cellulosome Database Search

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Genome ifo

Batch3_genome_fasta/D.cinnamea: Dietzia cinnamea, 55 [+] (ncbi)

Genbanks info:

Genbank_acc: PaGL#56_01740
Genome uid: 384
1893459-1896245 [+] (928)

Sequence:

VSTPKKGTRGGARTASPAPERTSGAFGAVGRGLRGGWSAVAKGVGHGVRGLGGGDDDDKVIPPHRRDGLGLVLIGIAIVF
AGAVWFGAAGPVGDWIDTGIRTIVGTPGALLPLLLGGWGVLVMAREPRPDVHSRWLVGATITALGVLGLWHLGSGSPTDP
GGVRSGAGVLGRIVGGTLEAGLSVFVAVPLLVLLVAFGVLVIVGRPAREIPGIVRGFFGWDGSGDIVDHDYDDAEGDWDD
EATTAYPIAETTGQEDSGRAATRRSSRRRVAAWSDTPTTGETVEMPRASRGATQARDTSDADLPGDGATLDDETPAPTRT
RRAPRRTEVLPAGEDPAADPTSAADPAARAAAEEAPTRVASPRTSAPTPAARASAPAPVTPAVDTSAVPQTNTPSTHTAA
ESDTERLSSQTQLLSGIDYALPPVSLLTAGDPPKARSESNDQMIEAIQGVLEQFKIDAAVTGFTRGPTVTRYEVELGPGV
KVEKITALHRNIAYAVATDNVRLLAPIPGKSAVGIEVPNLDRELVRLADVLTDPKTASKHNPMLIGLGKDIEGDFVTADL
AKMPHLLVAGSTGSGKSSFVNSMLVSLLTRATPDEVRLILIDPKMVELTPYEGIPHLITPIITQPKKAAAALAWLVEEME
QRYQDMKSTRVRHITDFNERVKSGAITAPPGSERVYRPYPYIVAVVDELADLMMTAPRDIEDAIVRITQKARAAGIHLVL
ATQRPSVDVVTGLIKTNVPSRLAFATSSLTDSRVILDQAGAEKLIGMGDGLFIPMGASRPIRMQGAFITDEEIHEVVDYA
KNQAEPEYDESITAAKDDGKKDIDSDIGDDLDDLLAAVELVVSSQFGSTSMLQRKLRVGFAKAGRLMDLMESRDIVGPSE
GSKAREVLVKPEELASVLWMIKGGTPPEDDPGEQPAELDAPAETPVG

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	0	69			3785902	1653944	18	136:Membrane Protein	0	0	0	1794	0	1
2	DeepTMHMM:inside		inside	1	68			3791482	1653944	9730	0	0	0	1794	0	2
3	DeepTMHMM:TMhelix		TMhelix	69	89			3791483	1653944	2056	141:DeepTMHMM: helix	0	0	0	1794	6	3
4	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	69	89			3785898	1653944	5	136:Membrane Protein	0	0	0	1794	0	4
5	PFAM:PF13491	IPR025199	4TM region of DNA translocase FtsK/SpoIIIE	89	206	23.7	3.2E-5	3785893	1653944	641	0	0	0	1794	0	5
6	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	89	100			3785905	1653944	3	136:Membrane Protein	0	0	0	1794	0	6
7	DeepTMHMM:outside		outside	90	103			3791484	1653944	10025	0	0	0	1794	0	7
8	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	100	124			3785900	1653944	5	136:Membrane Protein	0	0	0	1794	0	8
9	DeepTMHMM:TMhelix		TMhelix	104	124			3791485	1653944	2056	141:DeepTMHMM: helix	0	0	0	1794	6	9
10	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	124	135			3785901	1653944	18	136:Membrane Protein	0	0	0	1794	0	10
11	DeepTMHMM:inside		inside	125	135			3791486	1653944	9730	0	0	0	1794	0	11
12	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	135	154			3785897	1653944	5	136:Membrane Protein	0	0	0	1794	0	12
13	DeepTMHMM:TMhelix		TMhelix	136	154			3791487	1653944	2056	141:DeepTMHMM: helix	0	0	0	1794	6	13
14	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	154	180			3785904	1653944	3	136:Membrane Protein	0	0	0	1794	0	14
15	DeepTMHMM:outside		outside	155	185			3791488	1653944	10025	0	0	0	1794	0	15
16	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	180	204			3785899	1653944	5	136:Membrane Protein	0	0	0	1794	0	16
17	DeepTMHMM:TMhelix		TMhelix	186	204			3791489	1653944	2056	141:DeepTMHMM: helix	0	0	0	1794	6	17
18	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	204	928			3785903	1653944	18	136:Membrane Protein	0	0	0	1794	0	18
19	DeepTMHMM:inside		inside	205	928			3791490	1653944	9730	0	0	0	1794	0	19
20	PFAM:PF17854	IPR041027	FtsK alpha domain	421	520	97.1	5.7E-28	3785896	1653944	643	0	0	0	1794	0	20
21	SUPERFAMILY:SSF52540	IPR027417	P-loop containing nucleoside triphosphate hydrolase	501	800			3785907	1653944	78	0	0	0	1794	0	21
22	PFAM:PF01580	IPR002543	FtsK/SpoIIIE family	527	728	211.8	0	3785895	1653944	372	0	0	0	1794	0	22
23	PROSITE_PROFILES:PS50901	IPR002543	FtsK domain profile.	553	754			3785906	1653944	378	0	0	0	1794	0	23
24	SMART:SM00843	IPR018541		828	893			3785892	1653944	1	0	0	0	1794	0	24
25	PFAM:PF09397	IPR018541	Ftsk gamma domain	834	890	76.5	9.6E-22	3785894	1653944	645	0	0	0	1794	0	25
26	SUPERFAMILY:SSF46785	IPR036390	Winged helix DNA-binding domain superfamily	834	894			3785908	1653944	42	0	0	0	1794	0	26

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