Cellulosome Database Search

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Genome ifo

Batch4_genome_fasta/bc2015: Methylorubrum populi, CTY4 [-] (ncbi)

Genbanks info:

Genbank_acc: PaGL#39_03368
Genome uid: 394
3648737-3651376 [+] (879)

Sequence:

ARSVPPLTTDDGAYGMASRARRFSRGRIGGRMAGIALAGVSIAVVAQAAQAGAMTGAVTGEAKRARGIAAKTILAEAPAE
GGPVRLAIPKGALETGLVAFTEQAGVKLVYPTELTARLETQGLDGEFSPIEALARLLEGTGLTYRPAGASTITLVNPRYV
QLGAEPAGTVTLDELHVQGQAQGRGTAAGLPPPTGTVGQPPVPYAGGQVGSGTRVGLLGNRSVLKTPFSITGYTEKLIED
QQAVSLADVVLNNSSVRNDAPPYSERDSYFIRGFSVTNLDTAFDGLFYLANPRRSFTEGLERVEILLGPSALLSGGTGRV
GGTINLIPKRAYDEPFARLTTTYLSDAQIWTHADLGRRFGAFKEWGVRFNGAYRTGATPLDNNSIEVGVAALGLDYRGDR
FRASLDMTHSTQNVTAPTSLFNAVAPGIPIPRAPNNRRNTANPFEYNDSRYGMIAGRAEYDVLPDTTVYIAGGASRYNED
FLTSNYRVTSVTGQATNQLAIQPQEIQGLTGEVGLRTRFSTGFLNHQVNIAAVEANNKNFRSGFVPPVFTPYTINIYNPA
YLPTGSVPTIGLPRSAAQPLFAQLSARSVAVADTLSFFGDDRFLLTLGGRYQEIDQQGFATRPGPTQGQVTSNYQEGRFS
PAITFVLSPFENLSFYGNYIESLDPVAAAPVAAINANALFPPAVGRQKEIGVKYDFGTIAATAALFEIELPNAFTDPGTR
IYSVSGRQRNRGVELNVFGEVVPGLRLLGGVTFIDAELVNTPNGQFNGRAAPGVPDTAFNLYAEYDLPPWLAPGLTLTGR
AIYTSSMFYDQANTQSVPDWTRFDAGLRYTMEGVNGKPVVFRALVQNLLDDSYWASAARGFLAVGAPRTFIVSASVDF

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	0	28			4242336	1696440	18	136:Membrane Protein	0	0	0	3337	0	1
2	DeepTMHMM:signal		signal	1	52			4268335	1696440	2198	0	0	0	3337	0	2
3	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	28	50			4242334	1696440	5	136:Membrane Protein	0	0	0	3337	0	3
4	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	50	879			4242335	1696440	3	136:Membrane Protein	0	0	0	3337	0	4
5	DeepTMHMM:periplasm		periplasm	53	337			4268336	1696440	10164	0	0	0	3337	0	5
6	SMART:SM00965	IPR011662		106	158			4242331	1696440	1	0	0	0	3337	0	6
7	SUPERFAMILY:SSF56935		-	171	879			4242338	1696440	12	0	0	0	3337	0	7
8	PFAM:PF07715	IPR012910	TonB-dependent Receptor Plug Domain	224	322	35.4	1.3E-8	4242333	1696440	10797	0	0	0	3337	0	8
9	CDD:cd01347		ligand_gated_channel	229	879			4242337	1696440	9770	0	0	0	3337	0	9
10	DeepTMHMM:Beta sheet		Beta sheet	338	345			4268337	1696440	8858	0	0	0	3337	0	10
11	DeepTMHMM:outside		outside	346	349			4268338	1696440	10025	0	0	0	3337	0	11
12	DeepTMHMM:Beta sheet		Beta sheet	350	357			4268339	1696440	8858	0	0	0	3337	0	12
13	DeepTMHMM:periplasm		periplasm	358	367			4268340	1696440	10164	0	0	0	3337	0	13
14	DeepTMHMM:Beta sheet		Beta sheet	368	375			4268341	1696440	8858	0	0	0	3337	0	14
15	DeepTMHMM:outside		outside	376	388			4268342	1696440	10025	0	0	0	3337	0	15
16	DeepTMHMM:Beta sheet		Beta sheet	389	396			4268343	1696440	8858	0	0	0	3337	0	16
17	DeepTMHMM:periplasm		periplasm	397	402			4268344	1696440	10164	0	0	0	3337	0	17
18	DeepTMHMM:Beta sheet		Beta sheet	403	411			4268345	1696440	8858	0	0	0	3337	0	18
19	PFAM:PF00593	IPR000531	TonB dependent receptor	410	877	122.9	3.3E-35	4242332	1696440	10796	0	0	0	3337	0	19
20	DeepTMHMM:outside		outside	412	453			4268346	1696440	10025	0	0	0	3337	0	20
21	DeepTMHMM:Beta sheet		Beta sheet	454	461			4268347	1696440	8858	0	0	0	3337	0	21
22	DeepTMHMM:periplasm		periplasm	462	467			4268348	1696440	10164	0	0	0	3337	0	22
23	DeepTMHMM:Beta sheet		Beta sheet	468	476			4268349	1696440	8858	0	0	0	3337	0	23
24	DeepTMHMM:outside		outside	477	510			4268350	1696440	10025	0	0	0	3337	0	24
25	DeepTMHMM:Beta sheet		Beta sheet	511	518			4268351	1696440	8858	0	0	0	3337	0	25
26	DeepTMHMM:periplasm		periplasm	519	527			4268352	1696440	10164	0	0	0	3337	0	26
27	DeepTMHMM:Beta sheet		Beta sheet	528	536			4268353	1696440	8858	0	0	0	3337	0	27
28	DeepTMHMM:outside		outside	537	588			4268354	1696440	10025	0	0	0	3337	0	28
29	DeepTMHMM:Beta sheet		Beta sheet	589	597			4268355	1696440	8858	0	0	0	3337	0	29
30	DeepTMHMM:periplasm		periplasm	598	603			4268356	1696440	10164	0	0	0	3337	0	30
31	DeepTMHMM:Beta sheet		Beta sheet	604	612			4268357	1696440	8858	0	0	0	3337	0	31
32	DeepTMHMM:outside		outside	613	640			4268358	1696440	10025	0	0	0	3337	0	32
33	DeepTMHMM:Beta sheet		Beta sheet	641	649			4268359	1696440	8858	0	0	0	3337	0	33
34	DeepTMHMM:periplasm		periplasm	650	653			4268360	1696440	10164	0	0	0	3337	0	34
35	DeepTMHMM:Beta sheet		Beta sheet	654	661			4268361	1696440	8858	0	0	0	3337	0	35
36	DeepTMHMM:outside		outside	662	688			4268362	1696440	10025	0	0	0	3337	0	36
37	DeepTMHMM:Beta sheet		Beta sheet	689	696			4268363	1696440	8858	0	0	0	3337	0	37
38	DeepTMHMM:periplasm		periplasm	697	699			4268364	1696440	10164	0	0	0	3337	0	38
39	DeepTMHMM:Beta sheet		Beta sheet	700	707			4268365	1696440	8858	0	0	0	3337	0	39
40	DeepTMHMM:outside		outside	708	733			4268366	1696440	10025	0	0	0	3337	0	40
41	DeepTMHMM:Beta sheet		Beta sheet	734	741			4268367	1696440	8858	0	0	0	3337	0	41
42	DeepTMHMM:periplasm		periplasm	742	745			4268368	1696440	10164	0	0	0	3337	0	42
43	DeepTMHMM:Beta sheet		Beta sheet	746	753			4268369	1696440	8858	0	0	0	3337	0	43
44	DeepTMHMM:outside		outside	754	779			4268370	1696440	10025	0	0	0	3337	0	44
45	DeepTMHMM:Beta sheet		Beta sheet	780	786			4268371	1696440	8858	0	0	0	3337	0	45
46	DeepTMHMM:periplasm		periplasm	787	795			4268372	1696440	10164	0	0	0	3337	0	46
47	DeepTMHMM:Beta sheet		Beta sheet	796	802			4268373	1696440	8858	0	0	0	3337	0	47
48	DeepTMHMM:outside		outside	803	823			4268374	1696440	10025	0	0	0	3337	0	48
49	DeepTMHMM:Beta sheet		Beta sheet	824	830			4268375	1696440	8858	0	0	0	3337	0	49
50	DeepTMHMM:periplasm		periplasm	831	839			4268376	1696440	10164	0	0	0	3337	0	50
51	DeepTMHMM:Beta sheet		Beta sheet	840	847			4268377	1696440	8858	0	0	0	3337	0	51
52	DeepTMHMM:outside		outside	848	870			4268378	1696440	10025	0	0	0	3337	0	52
53	DeepTMHMM:Beta sheet		Beta sheet	871	878			4268379	1696440	8858	0	0	0	3337	0	53
54	DeepTMHMM:periplasm		periplasm	879	879			4268380	1696440	10164	0	0	0	3337	0	54

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