Cellulosome Database Search

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Genome ifo

Batch4_genome_fasta/bc2029: Methanospirillum stamsii, Pt1 [-] (IMG)

Genbanks info:

Genbank_acc: MLKi8_03132
Genome uid: 397
3243730-3245628 [+] (632)

Sequence:

ERLEEITAVILNTIANEKTGLSIVELAELTGIHRNVLAKYIKVLEAQGKIEISRVGAKKFIQLSHRVSVSFLKVFTTLPF
FIFDRHLTAIDKNKEILELYELEHINSDMSDSQDRLLSIFLSDEVVPLLQDGIRGQRSHIDLETGTSKNPHSYFLTIIPV
VFDNGRPGSALIIEDKSKEEEKRKKCDLIKNAYQELLENQVQFIVRFNRDYKIITTNTCFSEHTGIDEKLLTGSQFIPPY
PEENFSNVINRMSSISKSDPVVTLDLRRINKNGDFSWERWKIKGIFDKKSGKFLEYLAIGIDITELKRTEQEFLHLKNNL
ETIIHTRTIELREVNNELNKEIFRREGIERELALTKFAIDSAHDLIFLLNSDGDIQYMNVRARENLNNLSGKTLNIRDIL
INDSRLGSKNLLTLTPNEMIDSGILTIKGSIHSTQGKDIPVEITMSRIIEQGEAVFCCIARDITDRTKIERDLYNYRKHL
EQIIDERTSRLQKEIDEKKLLETECSQIKNNLILFTDNSLESVFIYDCDNEQYFDVNQTAETTFNIDRKNLEMIPELFSK
VVCKNGKNLNHVINEKRTEFKLNSMISLRTIIQSEQLLEKEVIITLKSLELDYKKLLRIGVIDISETLSIS

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:SIGNAL_PEPTIDE		Signal peptide region	0	26			4129865	1716661	19	135:all secretion /signal peptide, lipo	0	0	0	3081	3	1
2	PROSITE_PROFILES:PS51257		Prokaryotic membrane lipoprotein lipid attachment site profile.	0	15			4129878	1716661	54	135:all secretion /signal peptide, lipo	0	0	0	3081	3	2
3	PHOBIUS:SIGNAL_PEPTIDE_N_REGION		N-terminal region of a signal peptide.	0	8			4129873	1716661	21	135:all secretion /signal peptide, lipo	0	0	0	3081	3	3
4	DeepTMHMM:inside		inside	1	8			4158834	1716661	9730	0	0	0	3081	0	4
5	SUPERFAMILY:SSF46785	IPR036390	Winged helix DNA-binding domain superfamily	7	77			4394555	1716661	42	0	0	0	3081	0	5
6	PHOBIUS:SIGNAL_PEPTIDE_H_REGION		Hydrophobic region of a signal peptide.	8	22			4129871	1716661	24	135:all secretion /signal peptide, lipo	0	0	0	3081	3	6
7	DeepTMHMM:TMhelix		TMhelix	9	29			4158835	1716661	2056	141:DeepTMHMM: helix	0	0	0	3081	6	7
8	PFAM:PF03073	IPR004307	TspO/MBR family	14	158	152.7	5.60519E-45	4129864	1716661	5382	0	0	0	3081	0	8
9	CDD:cd15904	IPR004307	TSPO_MBR	15	158			4129879	1716661	5384	0	0	0	3081	0	9
10	PHOBIUS:SIGNAL_PEPTIDE_C_REGION		C-terminal region of a signal peptide.	22	26			4129872	1716661	26	135:all secretion /signal peptide, lipo	0	0	0	3081	3	10
11	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	26	49			4129869	1716661	3	136:Membrane Protein	0	0	0	3081	0	11
12	DeepTMHMM:outside		outside	30	50			4158836	1716661	10025	0	0	0	3081	0	12
13	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	49	72			4129877	1716661	5	136:Membrane Protein	0	0	0	3081	0	13
14	DeepTMHMM:TMhelix		TMhelix	51	71			4158837	1716661	2056	141:DeepTMHMM: helix	0	0	0	3081	6	14
15	DeepTMHMM:inside		inside	72	83			4158838	1716661	9730	0	0	0	3081	0	15
16	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	72	83			4129867	1716661	18	136:Membrane Protein	0	0	0	3081	0	16
17	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	83	103			4129875	1716661	5	136:Membrane Protein	0	0	0	3081	0	17
18	DeepTMHMM:TMhelix		TMhelix	84	105			4158839	1716661	2056	141:DeepTMHMM: helix	0	0	0	3081	6	18
19	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	103	108			4129870	1716661	3	136:Membrane Protein	0	0	0	3081	0	19
20	DeepTMHMM:outside		outside	106	108			4158840	1716661	10025	0	0	0	3081	0	20
21	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	108	129			4129874	1716661	5	136:Membrane Protein	0	0	0	3081	0	21
22	DeepTMHMM:TMhelix		TMhelix	109	129			4158841	1716661	2056	141:DeepTMHMM: helix	0	0	0	3081	6	22
23	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	129	135			4129866	1716661	18	136:Membrane Protein	0	0	0	3081	0	23
24	DeepTMHMM:inside		inside	130	136			4158842	1716661	9730	0	0	0	3081	0	24
25	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	135	160			4129876	1716661	5	136:Membrane Protein	0	0	0	3081	0	25
26	DeepTMHMM:TMhelix		TMhelix	137	158			4158843	1716661	2056	141:DeepTMHMM: helix	0	0	0	3081	6	26
27	DeepTMHMM:outside		outside	159	162			4158844	1716661	10025	0	0	0	3081	0	27
28	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	160	162			4129868	1716661	3	136:Membrane Protein	0	0	0	3081	0	28
29	SMART:SM00091	IPR000014		191	255			4394547	1716661	1	0	0	0	3081	0	29
30	SUPERFAMILY:SSF55785	IPR035965	PAS domain superfamily	196	309			4394553	1716661	289	0	0	0	3081	0	30
31	PFAM:PF13426	IPR000014	PAS domain	208	306	19.7	0.00076	4394550	1716661	275	0	0	0	3081	0	31
32	PROSITE_PROFILES:PS50113	IPR000700	PAC domain profile.	262	316			4394552	1716661	280	0	0	0	3081	0	32
33	SMART:SM00086	IPR001610		263	307			4394549	1716661	1	0	0	0	3081	0	33
34	SMART:SM00091	IPR000014		353	418			4394548	1716661	1	0	0	0	3081	0	34
35	SUPERFAMILY:SSF55785	IPR035965	PAS domain superfamily	357	467			4394554	1716661	289	0	0	0	3081	0	35
36	PFAM:PF00989	IPR013767	PAS fold	358	464	26.1	6.8E-6	4394551	1716661	453	0	0	0	3081	0	36

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