Cellulosome Database Search

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Genome ifo

GCF_001908275.1: Paenibacillus xylanexedens, PAMC 22703 [+] (ncbi)

Genbanks info:

Genbank_acc: WP_074096592.1:OCNFKFFE_06205
Genome uid: 46
7012464-7013792 [+] (442)

Sequence:

EWVWPWLTTLGEALLQLFIQPFYYIAVILIALIYHRQLLQERKLFHVRLQSSITQTIRAVLGGILIGTIVSIVSLFLGAH
LTLGSLICIWAATLVLSLFRIRYLCFAYAAGLLGVVQFGLNLASGWQPSGWMGSITETLRALDMPALLVLAAILHMGEAL
LVRMQGVSMASPLLFEGKRGKLVGGYQLQQFWAIPLLILVPVTGGGAELAWNPLMNAGHSYMLVALPIMLGFGEITQSML
PGQKVQISSKRLMIYGATLLVFSLLAAWWSPLMVVAALIAFIGHEFLVWYSAFEEQNRSPVFVHPQHGLKVLAVIPESPA
ADLGIEAGETLYKVNGKLVHSPEELHRALRMNPAFCKLEVRNHQGESKFMQRAIYEGEHHQLGIIMAPDNHEVWAIRLRP
LTLFHIINLKLFARLKKPQRDEAPLALPPAPVTSDKGSIEM

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	0	14			1715519	214655	3	136:Membrane Protein	15	0	1	6117	0	1
2	DeepTMHMM:outside		outside	1	22			1673596	214655	10025	15	0	1	6117	0	2
3	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	14	36			1715512	214655	5	136:Membrane Protein	15	0	1	6117	0	3
4	DeepTMHMM:TMhelix		TMhelix	23	34			1673597	214655	2056	141:DeepTMHMM: helix	15	0	1	6117	5	4
5	DeepTMHMM:inside		inside	35	59			1673598	214655	9730	15	0	1	6117	0	5
6	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	36	56			1715505	214655	18	136:Membrane Protein	15	0	1	6117	0	6
7	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	56	78			1715507	214655	5	136:Membrane Protein	15	0	1	6117	0	7
8	DeepTMHMM:TMhelix		TMhelix	60	80			1673599	214655	2056	141:DeepTMHMM: helix	15	0	1	6117	5	8
9	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	78	83			1715518	214655	3	136:Membrane Protein	15	0	1	6117	0	9
10	DeepTMHMM:outside		outside	81	81			1673600	214655	10025	15	0	1	6117	0	10
11	DeepTMHMM:TMhelix		TMhelix	82	102			1673601	214655	2056	141:DeepTMHMM: helix	15	0	1	6117	5	11
12	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	83	100			1715508	214655	5	136:Membrane Protein	15	0	1	6117	0	12
13	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	100	106			1715432	214655	18	136:Membrane Protein	15	0	1	6117	0	13
14	DeepTMHMM:inside		inside	103	103			1673602	214655	9730	15	0	1	6117	0	14
15	DeepTMHMM:TMhelix		TMhelix	104	121			1673603	214655	2056	141:DeepTMHMM: helix	15	0	1	6117	5	15
16	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	106	125			1715509	214655	5	136:Membrane Protein	15	0	1	6117	0	16
17	DeepTMHMM:outside		outside	122	145			1673604	214655	10025	15	0	1	6117	0	17
18	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	125	144			1715515	214655	3	136:Membrane Protein	15	0	1	6117	0	18
19	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	144	163			1715511	214655	5	136:Membrane Protein	15	0	1	6117	0	19
20	DeepTMHMM:TMhelix		TMhelix	146	163			1673605	214655	2056	141:DeepTMHMM: helix	15	0	1	6117	5	20
21	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	163	183			1715430	214655	18	136:Membrane Protein	15	0	1	6117	0	21
22	DeepTMHMM:inside		inside	164	191			1673606	214655	9730	15	0	1	6117	0	22
23	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	183	201			1715514	214655	5	136:Membrane Protein	15	0	1	6117	0	23
24	DeepTMHMM:TMhelix		TMhelix	192	201			1673607	214655	2056	141:DeepTMHMM: helix	15	0	1	6117	5	24
25	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	201	220			1715516	214655	3	136:Membrane Protein	15	0	1	6117	0	25
26	DeepTMHMM:outside		outside	202	222			1673608	214655	10025	15	0	1	6117	0	26
27	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	220	241			1715513	214655	5	136:Membrane Protein	15	0	1	6117	0	27
28	DeepTMHMM:TMhelix		TMhelix	223	238			1673609	214655	2056	141:DeepTMHMM: helix	15	0	1	6117	5	28
29	DeepTMHMM:inside		inside	239	252			1673610	214655	9730	15	0	1	6117	0	29
30	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	241	252			1715431	214655	18	136:Membrane Protein	15	0	1	6117	0	30
31	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	252	270			1715506	214655	5	136:Membrane Protein	15	0	1	6117	0	31
32	DeepTMHMM:TMhelix		TMhelix	253	268			1673611	214655	2056	141:DeepTMHMM: helix	15	0	1	6117	5	32
33	DeepTMHMM:outside		outside	269	272			1673612	214655	10025	15	0	1	6117	0	33
34	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	270	275			1715517	214655	3	136:Membrane Protein	15	0	1	6117	0	34
35	DeepTMHMM:TMhelix		TMhelix	273	291			1673613	214655	2056	141:DeepTMHMM: helix	15	0	1	6117	5	35
36	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	275	294			1715510	214655	5	136:Membrane Protein	15	0	1	6117	0	36
37	DeepTMHMM:inside		inside	292	442			1673614	214655	9730	15	0	1	6117	0	37
38	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	294	442			1715433	214655	18	136:Membrane Protein	15	0	1	6117	0	38
39	CDD:cd00987		PDZ_serine_protease	306	372			1715520	214655	1938	15	0	1	6117	0	39
40	SUPERFAMILY:SSF50156	IPR036034	PDZ superfamily	307	398			1715521	214655	1772	15	0	1	6117	0	40
41	PFAM:PF17820	IPR041489	PDZ domain	311	362	35.7	5.8E-9	1715429	214655	1769	15	0	1	6117	0	41

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