Cellulosome Database Search

This page is just for checking and is not meant to be part of the public site.

We will take the links to it out when ready.

Genome ifo

GCF_009763905.1: Vibrio metoecus, 2011V-1015 [-] (ncbi)

Genbanks info:

Genbank_acc: WP_167517929.1:LCOAFGMP_02624
Genome uid: 75
2803979-2805427 [+] (482)

Sequence:

LAHVRTVWLVLGFTLSLGLSFSAMSSQEEETAYRGALCLIRGDNKLVMTQEVLTGKLSLPGGTIEAGETPQMAAQRETWQ
ETGMVVAVGRLLGHTPTALVYECISESQVIAYAYQNGLGGYELPIWFAPDYGVETISSMLITPSYIKPNQYRYSEQWASI
LSLFNVSTDQAVDYVTELHKAAPRFQQVELDWLNQLQYGLAQLQKSMPWLQNIILSGMIFNLPVMGLVLFPLIYWQLGKP
YCYKILFAMTVTSLLCLVAQQGFSLPRPHVYQPGLELFPSYGFGFPNLPIALWGCLGVLLWHVRQEFTHRWAMRIWAGVF
IWLSFASFYSGSAFLSDIATGSLFGGLVAWHIIRLDLKPGVNVQSLLTSKPVWWGLTIACAILSIIWPQPIFTQWLAFLV
TIAGLVTVLKPISAELSFREVLLMIVLLLLANEAISLAISPFNHSSLYSLIGETLRYPALILLFVLLARRRVKPSLTTPV
H

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:SIGNAL_PEPTIDE		Signal peptide region	0	26			2884556	254532	19	135:all secretion /signal peptide, lipo	13	0	1	3583	3	1
2	PHOBIUS:SIGNAL_PEPTIDE_N_REGION		N-terminal region of a signal peptide.	0	6			2884553	254532	21	135:all secretion /signal peptide, lipo	13	1	1	3583	3	2
3	DeepTMHMM:signal		signal	1	26			2937777	254532	2198	13	0	1	3583	0	3
4	PHOBIUS:SIGNAL_PEPTIDE_H_REGION		Hydrophobic region of a signal peptide.	6	18			2884561	254532	24	135:all secretion /signal peptide, lipo	13	1	1	3583	3	4
5	PHOBIUS:SIGNAL_PEPTIDE_C_REGION		C-terminal region of a signal peptide.	18	26			2884559	254532	26	135:all secretion /signal peptide, lipo	13	1	1	3583	3	5
6	SIGNALP6:SP		SP	25	26	0		2914037	254532	1978	135:all secretion /signal peptide, lipo	13	0	1	3583	0	6
7	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	26	213			2884504	254532	3	136:Membrane Protein	13	0	1	3583	0	7
8	DeepTMHMM:outside		outside	27	213			2937806	254532	10025	13	0	1	3583	0	8
9	PROSITE_PROFILES:PS51462	IPR000086	Nudix hydrolase domain profile.	31	190			2884563	254532	228	13	0	1	3583	0	9
10	CDD:cd02883		Nudix_Hydrolase	34	131			2884568	254532	5850	13	0	1	3583	0	10
11	SUPERFAMILY:SSF55811	IPR015797	NUDIX hydrolase-like domain superfamily	35	115			2884571	254532	230	13	0	1	3583	0	11
12	PFAM:PF00293	IPR000086	NUDIX domain	36	116	44.5	1.4E-11	2884493	254532	227	13	0	1	3583	0	12
13	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	213	235			2884538	254532	5	136:Membrane Protein	13	0	1	3583	0	13
14	DeepTMHMM:TMhelix		TMhelix	214	234			2937807	254532	2056	141:DeepTMHMM: helix	13	0	1	3583	5	14
15	DeepTMHMM:inside		inside	235	245			2937808	254532	9730	13	0	1	3583	0	15
16	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	235	241			2884500	254532	18	136:Membrane Protein	13	0	1	3583	0	16
17	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	241	264			2884543	254532	5	136:Membrane Protein	13	0	1	3583	0	17
18	CDD:cd01610		PAP2_like	245	354			2884566	254532	4954	13	0	1	3583	0	18
19	DeepTMHMM:TMhelix		TMhelix	246	261			2937809	254532	2056	141:DeepTMHMM: helix	13	0	1	3583	5	19
20	DeepTMHMM:outside		outside	262	290			2937810	254532	10025	13	0	1	3583	0	20
21	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	264	283			2884508	254532	3	136:Membrane Protein	13	0	1	3583	0	21
22	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	283	304			2884536	254532	5	136:Membrane Protein	13	0	1	3583	0	22
23	DeepTMHMM:TMhelix		TMhelix	291	302			2937811	254532	2056	141:DeepTMHMM: helix	13	0	1	3583	5	23
24	DeepTMHMM:inside		inside	303	311			2937812	254532	9730	13	0	1	3583	0	24
25	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	304	315			2884502	254532	18	136:Membrane Protein	13	0	1	3583	0	25
26	DeepTMHMM:TMhelix		TMhelix	312	327			2937813	254532	2056	141:DeepTMHMM: helix	13	0	1	3583	5	26
27	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	315	333			2884546	254532	5	136:Membrane Protein	13	0	1	3583	0	27
28	DeepTMHMM:outside		outside	328	338			2937814	254532	10025	13	0	1	3583	0	28
29	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	333	338			2884503	254532	3	136:Membrane Protein	13	0	1	3583	0	29
30	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	338	356			2884541	254532	5	136:Membrane Protein	13	0	1	3583	0	30
31	DeepTMHMM:TMhelix		TMhelix	339	354			2937815	254532	2056	141:DeepTMHMM: helix	13	0	1	3583	5	31
32	DeepTMHMM:inside		inside	355	372			2937816	254532	9730	13	0	1	3583	0	32
33	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	356	367			2884497	254532	18	136:Membrane Protein	13	0	1	3583	0	33
34	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	367	387			2884534	254532	5	136:Membrane Protein	13	0	1	3583	0	34
35	DeepTMHMM:TMhelix		TMhelix	373	388			2937817	254532	2056	141:DeepTMHMM: helix	13	0	1	3583	5	35
36	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	387	392			2884510	254532	3	136:Membrane Protein	13	0	1	3583	0	36
37	DeepTMHMM:outside		outside	389	394			2937818	254532	10025	13	0	1	3583	0	37
38	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	392	410			2884531	254532	5	136:Membrane Protein	13	0	1	3583	0	38
39	DeepTMHMM:TMhelix		TMhelix	395	410			2937819	254532	2056	141:DeepTMHMM: helix	13	0	1	3583	5	39
40	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	410	421			2884495	254532	18	136:Membrane Protein	13	0	1	3583	0	40
41	DeepTMHMM:inside		inside	411	421			2937820	254532	9730	13	0	1	3583	0	41
42	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	421	441			2884548	254532	5	136:Membrane Protein	13	0	1	3583	0	42
43	DeepTMHMM:TMhelix		TMhelix	422	440			2937821	254532	2056	141:DeepTMHMM: helix	13	0	1	3583	5	43
44	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	441	446			2884506	254532	3	136:Membrane Protein	13	0	1	3583	0	44
45	DeepTMHMM:outside		outside	441	447			2937822	254532	10025	13	0	1	3583	0	45
46	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	446	469			2884551	254532	5	136:Membrane Protein	13	0	1	3583	0	46
47	DeepTMHMM:TMhelix		TMhelix	448	468			2937823	254532	2056	141:DeepTMHMM: helix	13	0	1	3583	5	47
48	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	469	482			2884499	254532	18	136:Membrane Protein	13	0	1	3583	0	48
49	DeepTMHMM:inside		inside	469	482			2937824	254532	9730	13	0	1	3583	0	49

↑ Top