Cellulosome Database Search

This page is just for checking and is not meant to be part of the public site.

We will take the links to it out when ready.

Genome ifo

GCF_000255615.2: Acetivibrio thermocellus, AD2 [+] (ncbi)

Genbanks info:

Genbank_acc: WP_003514846.1:BCBBJIPK_00601
Genome uid: 68
639814-642312 [+] (832)

Sequence:

ISKMNLTTKMMVFIGTVTAIALAATIIISYVLSSNMAIEEGFAKVEEMAYRYSNEVKAEIELPLDTARTLAQTFEAMRAT
STPDRDVMNSILRNVLEKEERFNGVWTLWEPNALDGKDAEYAGKPGYDETGRFLPLWNRDTGTIQQVAIVDYETGDFYNL
PKQTGEETVTNPYLYPVNGEYAPMSSIVVPIKYNGQFVGVAGVDVILGTFQDKVVKIRPYERGYASLVSNDGVYVADINE
ENIFTPIADEKAKAAIKNGEVYTTTEYCEILKEEVYKVYVPIKFGNTKTPWSFVVTAPMSKVMEKANMIRNASLILGIVA
LAILLVIIFFITRSVVGPIKELTNVAEKIAEDNLSTEINIIKTQDEVGNLSRAFHKMQQNLRDIAHTAEKIAQGDLSDDR
ILKEDGKQAGDLTGAFNVMVTNLKQLKNEIDSITMAVEEGKLGVRGNEEAFKGGWKELLKGINKTLDAVIAPIREASLVL
QEVAKGNLNVAVTGDYKGENAIIKDNLNMTIDNINQILWEVTAAAEQVASSSRQVAVSSESLSQGATEQASTIEEITSSM
EQIAAQTKQNAINANKASELALSVKNNAIQGKSHMEDMLVSMQNINKSSSDISRIIKVIDDIAFQTNILALNAAVEAARA
GQHGKGFAVVAEEVRNLAERSARAARETTEMIESSIRTVETGTKIAHETAEALNKIVDGVTETSALAEEIASASKEQDLG
ISQVNQAISQVAEVIHANSVEAEESASANEELSKQANMLKESLSRFKLKPNSSEASKVDSIRPEVMRMLEDMVEKKMSSH
HLDESKHKGKGNKEPETKAQILLDNKEFGKY

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	0	11			2474678	262373	3	136:Membrane Protein	13	0	1	585	0	1
2	DeepTMHMM:inside		inside	1	11			2562837	262373	9730	13	0	1	585	0	2
3	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	11	33			2474681	262373	5	136:Membrane Protein	13	0	1	585	0	3
4	DeepTMHMM:TMhelix		TMhelix	12	32			2562839	262373	2056	141:DeepTMHMM: helix	13	0	1	585	5	4
5	DeepTMHMM:outside		outside	33	312			2562841	262373	10025	13	0	1	585	0	5
6	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	33	309			2474703	262373	18	136:Membrane Protein	13	0	1	585	0	6
7	CDD:cd12913		PDC1_MCP_like	59	206			2474711	262373	1821	13	0	1	585	0	7
8	PFAM:PF02743	IPR033479	Cache domain	127	296	48.7	6.5E-13	2474674	262373	1162	13	0	1	585	0	8
9	CDD:cd12912		PDC2_MCP_like	209	301			2474714	262373	1820	13	0	1	585	0	9
10	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	309	332			2474680	262373	5	136:Membrane Protein	13	0	1	585	0	10
11	DeepTMHMM:TMhelix		TMhelix	313	333			2562842	262373	2056	141:DeepTMHMM: helix	13	0	1	585	5	11
12	PFAM:PF00672	IPR003660	HAMP domain	330	384	48	1.2E-12	2474675	262373	454	13	0	1	585	0	12
13	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	332	832			2474679	262373	3	136:Membrane Protein	13	0	1	585	0	13
14	SMART:SM00304	IPR003660		333	387			2474672	262373	1	13	0	1	585	0	14
15	SUPERFAMILY:SSF158472		-	333	385			2474724	262373	12	13	0	1	585	0	15
16	PROSITE_PROFILES:PS50885	IPR003660	HAMP domain profile.	333	387			2474709	262373	455	13	0	1	585	0	16
17	DeepTMHMM:inside		inside	334	832			2562844	262373	9730	13	0	1	585	0	17
18	CDD:cd06225		HAMP	336	382			2474719	262373	457	13	0	1	585	0	18
19	CDD:cd06225		HAMP	381	424			2474717	262373	457	13	0	1	585	0	19
20	PFAM:PF18947	IPR003660	HAMP domain	451	517	73.8	7.8E-21	2474677	262373	454	13	0	1	585	0	20
21	SMART:SM00304	IPR003660		467	520			2474673	262373	1	13	0	1	585	0	21
22	SUPERFAMILY:SSF58104		-	487	769			2474727	262373	12	13	0	1	585	0	22
23	SMART:SM00283	IPR004089		520	768			2474671	262373	1	13	0	1	585	0	23
24	PROSITE_PROFILES:PS50111	IPR004089	Bacterial chemotaxis sensory transducers domain profile.	524	754			2474706	262373	601	13	0	1	585	0	24
25	CDD:cd11386		MCP_signal	547	747			2474722	262373	602	13	0	1	585	0	25
26	PFAM:PF00015	IPR004089	Methyl-accepting chemotaxis protein (MCP) signalling domain	578	735	168.6	0	2474676	262373	600	135:all secretion /signal peptide, lipo	13	0	1	585	3	26

↑ Top