Cellulosome Database Search

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Genome ifo

GCF_000807675.2: Eubacterium limosum, ATCC 8486 [+] (ncbi)

Genbanks info:

Genbank_acc: WP_038353696.1:FNLCGJPJ_01395
Genome uid: 76
1475357-1477357 [+] (666)

Sequence:

RHLKKSTEIPVSLGASIVALGVVYGDIGTSPMYVMKSIIAGNGGLNSIDDNLILGALSLVIWTVTLLTTVKYVLIALKAD
NHGEGGIFSLYSLIKKYKAWLIVPAMVGGAALLADGILTPAVTVTTAIEGLRSLPFIYRFLGDEQSRIVMITLAIIALLF
FVQRAGTKSIGKSFGPVMTVWFLFLAISGIANMAGNWEILRAFNPLRGAAILFSPNNQAGVMILGSVFLATTGAEALYSD
IGHVGRGNVYASWPFVKVCLILNYLGQGAWLMANKGNTTLGTLPDLNPFFQMLPDNIRIFGVLLSTLAAVIASQALITGT
FTLVSEAISLDLMPHMRITYPSETKGQLYIPLVNLVMWLACSGVILYFRSSARLESAYGLAITLTMLMTTLLLFMYLRCL
KGLRILPFIFLVFFGGLEGTFFLSSLSKFESGGYVALLIATILFAIMAVWHRGTDIERSQALKLHISDYTNMFGDVHRDN
RLITVSDNLVYLMNETEGDTIDRDILYSIFDKKTKRARAYWFVSVSVTDEPYTREYTVDSFGTDYLFRVKLYLGFKVDQR
INVYLRQIVGDLITSHELPPQQRRYSIGDNSTVGDFRFCILRKMLVPESDIHPSDWAAVSLKYMIRRVAGSPVQWYGLEN
ASVIVEYVPLFIKMKASNPLKRVDE

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:SIGNAL_PEPTIDE		Signal peptide region	0	26			2873680	264087	19	135:all secretion /signal peptide, lipo	13	0	1	1376	3	1
2	PHOBIUS:SIGNAL_PEPTIDE_N_REGION		N-terminal region of a signal peptide.	0	9			2873683	264087	21	135:all secretion /signal peptide, lipo	13	1	1	1376	3	2
3	DeepTMHMM:inside		inside	1	14			2989401	264087	9730	13	0	1	1376	0	3
4	PHOBIUS:SIGNAL_PEPTIDE_H_REGION		Hydrophobic region of a signal peptide.	9	21			2873682	264087	24	135:all secretion /signal peptide, lipo	13	1	1	1376	3	4
5	DeepTMHMM:TMhelix		TMhelix	15	35			2989403	264087	2056	141:DeepTMHMM: helix	13	0	1	1376	5	5
6	PFAM:PF02705	IPR003855	K+ potassium transporter	17	557	533.9	0	2873612	264087	6622	13	0	1	1376	0	6
7	PHOBIUS:SIGNAL_PEPTIDE_C_REGION		C-terminal region of a signal peptide.	21	26			2873681	264087	26	135:all secretion /signal peptide, lipo	13	1	1	1376	3	7
8	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	26	52			2873619	264087	3	136:Membrane Protein	13	0	1	1376	0	8
9	DeepTMHMM:outside		outside	36	53			2989405	264087	10025	13	0	1	1376	0	9
10	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	52	75			2873659	264087	5	136:Membrane Protein	13	0	1	1376	0	10
11	DeepTMHMM:TMhelix		TMhelix	54	71			2989454	264087	2056	141:DeepTMHMM: helix	13	0	1	1376	5	11
12	DeepTMHMM:inside		inside	72	102			2989455	264087	9730	13	0	1	1376	0	12
13	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	75	99			2873646	264087	18	136:Membrane Protein	13	0	1	1376	0	13
14	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	99	129			2873661	264087	5	136:Membrane Protein	13	0	1	1376	0	14
15	DeepTMHMM:TMhelix		TMhelix	103	123			2989456	264087	2056	141:DeepTMHMM: helix	13	0	1	1376	5	15
16	DeepTMHMM:outside		outside	124	147			2989457	264087	10025	13	0	1	1376	0	16
17	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	129	148			2873615	264087	3	136:Membrane Protein	13	0	1	1376	0	17
18	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	148	167			2873656	264087	5	136:Membrane Protein	13	0	1	1376	0	18
19	DeepTMHMM:TMhelix		TMhelix	148	163			2989458	264087	2056	141:DeepTMHMM: helix	13	0	1	1376	5	19
20	DeepTMHMM:inside		inside	164	173			2989459	264087	9730	13	0	1	1376	0	20
21	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	167	178			2873643	264087	18	136:Membrane Protein	13	0	1	1376	0	21
22	DeepTMHMM:TMhelix		TMhelix	174	194			2989460	264087	2056	141:DeepTMHMM: helix	13	0	1	1376	5	22
23	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	178	200			2873667	264087	5	136:Membrane Protein	13	0	1	1376	0	23
24	DeepTMHMM:outside		outside	195	219			2989461	264087	10025	13	0	1	1376	0	24
25	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	200	219			2873625	264087	3	136:Membrane Protein	13	0	1	1376	0	25
26	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	219	239			2873664	264087	5	136:Membrane Protein	13	0	1	1376	0	26
27	DeepTMHMM:TMhelix		TMhelix	220	240			2989462	264087	2056	141:DeepTMHMM: helix	13	0	1	1376	5	27
28	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	239	250			2873640	264087	18	136:Membrane Protein	13	0	1	1376	0	28
29	DeepTMHMM:inside		inside	241	253			2989463	264087	9730	13	0	1	1376	0	29
30	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	250	274			2873651	264087	5	136:Membrane Protein	13	0	1	1376	0	30
31	DeepTMHMM:TMhelix		TMhelix	254	271			2989464	264087	2056	141:DeepTMHMM: helix	13	0	1	1376	5	31
32	DeepTMHMM:outside		outside	272	299			2989465	264087	10025	13	0	1	1376	0	32
33	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	274	299			2873628	264087	3	136:Membrane Protein	13	0	1	1376	0	33
34	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	299	329			2873676	264087	5	136:Membrane Protein	13	0	1	1376	0	34
35	DeepTMHMM:TMhelix		TMhelix	300	322			2989466	264087	2056	141:DeepTMHMM: helix	13	0	1	1376	5	35
36	DeepTMHMM:inside		inside	323	352			2989467	264087	9730	13	0	1	1376	0	36
37	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	329	348			2873649	264087	18	136:Membrane Protein	13	0	1	1376	0	37
38	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	348	371			2873677	264087	5	136:Membrane Protein	13	0	1	1376	0	38
39	DeepTMHMM:TMhelix		TMhelix	353	369			2989468	264087	2056	141:DeepTMHMM: helix	13	0	1	1376	5	39
40	DeepTMHMM:outside		outside	370	377			2989469	264087	10025	13	0	1	1376	0	40
41	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	371	376			2873631	264087	3	136:Membrane Protein	13	0	1	1376	0	41
42	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	376	397			2873655	264087	5	136:Membrane Protein	13	0	1	1376	0	42
43	DeepTMHMM:TMhelix		TMhelix	378	398			2989470	264087	2056	141:DeepTMHMM: helix	13	0	1	1376	5	43
44	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	397	408			2873634	264087	18	136:Membrane Protein	13	0	1	1376	0	44
45	DeepTMHMM:inside		inside	399	405			2989471	264087	9730	13	0	1	1376	0	45
46	DeepTMHMM:TMhelix		TMhelix	406	427			2989472	264087	2056	141:DeepTMHMM: helix	13	0	1	1376	5	46
47	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	408	427			2873679	264087	5	136:Membrane Protein	13	0	1	1376	0	47
48	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	427	432			2873622	264087	3	136:Membrane Protein	13	0	1	1376	0	48
49	DeepTMHMM:outside		outside	428	433			2989473	264087	10025	13	0	1	1376	0	49
50	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	432	451			2873678	264087	5	136:Membrane Protein	13	0	1	1376	0	50
51	DeepTMHMM:TMhelix		TMhelix	434	450			2989474	264087	2056	141:DeepTMHMM: helix	13	0	1	1376	5	51
52	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	451	666			2873637	264087	18	136:Membrane Protein	13	0	1	1376	0	52
53	DeepTMHMM:inside		inside	451	666			2989475	264087	9730	13	0	1	1376	0	53

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