Cellulosome Database Search

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Genome ifo

GCF_001481725.1: Eubacterium limosum, SA11 [+] (ncbi)

Genbanks info:

Genbank_acc: WP_058695358.1:FCLGBLEE_02800
Genome uid: 86
2956819-2959134 [+] (771)

Sequence:

KRPLIYAFAALCCAILLAGFGAPFFLYVLLPVALLPLPLIFKKVRPVSVVLVLAVYILGCAAAIPIFGNENPFEDFWDHS
VALSGMVDSVPSHEGEKTRFVLKLQEINHMPVSGKVMVTVAENSVNYTPGAALSFDGEISEPAGRRNPGGFDYALYLKAK
GIGGQVYLKNREAVTVKPGSSSPIYAVYRMRQHLSEVCDQFFTPPQSGLIKGILLGDSTMDDEVKASFREAGVSHVLAIS
GLHVGYVYVLVLWILALLGVRRRYHLPVLAACLLFYITLTGFSPSVIRAALMCLALVGGRGMAETYDALNGLCLAGIVIL
LFQPVQLFMAGFQLSFSAVLAIILFYKPLLYEYERHIKAPGAMASNLLLTFCATLGTMPANLYHFHTLNLVALVSNLLII
PLVGVLLVFALITVPLTAFIPAAGGLFCLPTAFLADCILFLTNLFSKFSWLVLHRGAMTLSELLILVLAALLLAGYFNLS
KKSARCFVGASLPLLLLVIFGTSLARQPLRITFLDVGQGDSALVETPSGGIYFIDGGGYETYGNAPQKERTPISESVLLP
VLYAKSIRRIDGVFISHNHADHAQGIEELLAEIPVGQIYVSSKYNNEALLRQNKVPVEILVKGSVLESGDGLSFEVLWPE
SKREALEDEEQNDASMLLRLCYGSRSFLFTGDAGFSVEEAVIRSLPETDVLKVGHHGSRFSTSSEFLKKINPSLAVISVG
RYNSFGHPTDEVLQNIEASGAVCKRTDQNGAVEVWTDGKDLSIRSCIDKK

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	0	5			203098	326936	3	136:Membrane Protein	15	0	1	2760	0	1
2	DeepTMHMM:inside		inside	1	4			237692	326936	9730	15	0	1	2760	0	2
3	DeepTMHMM:TMhelix		TMhelix	5	23			237693	326936	2056	141:DeepTMHMM: helix	15	0	1	2760	5	3
4	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	5	36			203085	326936	5	136:Membrane Protein	15	0	1	2760	0	4
5	PFAM:PF13567	IPR025405	Domain of unknown function (DUF4131)	22	173	96.6	1.2E-27	203067	326936	3446	15	0	1	2760	0	5
6	DeepTMHMM:outside		outside	24	24			237694	326936	10025	15	0	1	2760	0	6
7	DeepTMHMM:TMhelix		TMhelix	25	42			237695	326936	2056	141:DeepTMHMM: helix	15	0	1	2760	5	7
8	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	36	47			203071	326936	18	136:Membrane Protein	15	0	1	2760	0	8
9	DeepTMHMM:inside		inside	43	46			237696	326936	9730	15	0	1	2760	0	9
10	DeepTMHMM:TMhelix		TMhelix	47	67			237697	326936	2056	141:DeepTMHMM: helix	15	0	1	2760	5	10
11	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	47	68			203075	326936	5	136:Membrane Protein	15	0	1	2760	0	11
12	DeepTMHMM:outside		outside	68	237			237698	326936	10025	15	0	1	2760	0	12
13	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	68	236			203108	326936	3	136:Membrane Protein	15	0	1	2760	0	13
14	PFAM:PF03772	IPR004477	Competence protein	214	475	185.7	0	203066	326936	3447	15	0	1	2760	0	14
15	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	236	261			203079	326936	5	136:Membrane Protein	15	0	1	2760	0	15
16	DeepTMHMM:TMhelix		TMhelix	238	259			237699	326936	2056	141:DeepTMHMM: helix	15	0	1	2760	5	16
17	DeepTMHMM:inside		inside	260	264			237710	326936	9730	15	0	1	2760	0	17
18	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	261	272			203069	326936	18	136:Membrane Protein	15	0	1	2760	0	18
19	DeepTMHMM:TMhelix		TMhelix	265	280			237711	326936	2056	141:DeepTMHMM: helix	15	0	1	2760	5	19
20	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	272	298			203081	326936	5	136:Membrane Protein	15	0	1	2760	0	20
21	DeepTMHMM:outside		outside	281	285			237712	326936	10025	15	0	1	2760	0	21
22	DeepTMHMM:TMhelix		TMhelix	286	300			237713	326936	2056	141:DeepTMHMM: helix	15	0	1	2760	5	22
23	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	298	317			203105	326936	3	136:Membrane Protein	15	0	1	2760	0	23
24	DeepTMHMM:inside		inside	301	309			237714	326936	9730	15	0	1	2760	0	24
25	DeepTMHMM:TMhelix		TMhelix	310	323			237715	326936	2056	141:DeepTMHMM: helix	15	0	1	2760	5	25
26	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	317	347			203092	326936	5	136:Membrane Protein	15	0	1	2760	0	26
27	DeepTMHMM:outside		outside	324	331			237716	326936	10025	15	0	1	2760	0	27
28	DeepTMHMM:TMhelix		TMhelix	332	346			237717	326936	2056	141:DeepTMHMM: helix	15	0	1	2760	5	28
29	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	347	367			203074	326936	18	136:Membrane Protein	15	0	1	2760	0	29
30	DeepTMHMM:inside		inside	347	367			237718	326936	9730	15	0	1	2760	0	30
31	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	367	386			203082	326936	5	136:Membrane Protein	15	0	1	2760	0	31
32	DeepTMHMM:TMhelix		TMhelix	368	381			237719	326936	2056	141:DeepTMHMM: helix	15	0	1	2760	5	32
33	DeepTMHMM:outside		outside	382	392			237720	326936	10025	15	0	1	2760	0	33
34	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	386	391			203095	326936	3	136:Membrane Protein	15	0	1	2760	0	34
35	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	391	415			203083	326936	5	136:Membrane Protein	15	0	1	2760	0	35
36	DeepTMHMM:TMhelix		TMhelix	393	421			237721	326936	2056	141:DeepTMHMM: helix	15	0	1	2760	5	36
37	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	415	426			203070	326936	18	136:Membrane Protein	15	0	1	2760	0	37
38	DeepTMHMM:inside		inside	422	422			237722	326936	9730	15	0	1	2760	0	38
39	DeepTMHMM:TMhelix		TMhelix	423	436			237723	326936	2056	141:DeepTMHMM: helix	15	0	1	2760	5	39
40	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	426	446			203089	326936	5	136:Membrane Protein	15	0	1	2760	0	40
41	DeepTMHMM:outside		outside	437	460			237724	326936	10025	15	0	1	2760	0	41
42	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	446	457			203102	326936	3	136:Membrane Protein	15	0	1	2760	0	42
43	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	457	480			203087	326936	5	136:Membrane Protein	15	0	1	2760	0	43
44	DeepTMHMM:TMhelix		TMhelix	461	478			237725	326936	2056	141:DeepTMHMM: helix	15	0	1	2760	5	44
45	DeepTMHMM:inside		inside	479	486			237726	326936	9730	15	0	1	2760	0	45
46	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	480	486			203072	326936	18	136:Membrane Protein	15	0	1	2760	0	46
47	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	486	506			203077	326936	5	136:Membrane Protein	15	0	1	2760	0	47
48	DeepTMHMM:TMhelix		TMhelix	487	502			237727	326936	2056	141:DeepTMHMM: helix	15	0	1	2760	5	48
49	DeepTMHMM:outside		outside	503	771			237728	326936	10025	15	0	1	2760	0	49
50	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	506	771			203099	326936	3	136:Membrane Protein	15	0	1	2760	0	50
51	SUPERFAMILY:SSF56281	IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	507	764			203112	326936	830	15	0	1	2760	0	51
52	CDD:cd07731	IPR035681	ComA-like_MBL-fold	510	697			203110	326936	2394	15	0	1	2760	0	52
53	PFAM:PF00753	IPR001279	Metallo-beta-lactamase superfamily	515	721	46.4	4.4E-12	203068	326936	1136	15	0	1	2760	0	53
54	SMART:SM00849	IPR001279		518	722			203064	326936	1	15	0	1	2760	0	54

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