Cellulosome Database Search

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Genome ifo

GCF_001481725.1: Eubacterium limosum, SA11 [+] (ncbi)

Genbanks info:

Genbank_acc: WP_058695379.1:FCLGBLEE_02822
Genome uid: 86
2979978-2980922 [+] (314)

Sequence:

KTLKLVEKSKIWFSIAIVLVLISVGSLLVRGLNFGIDFVGGTIVTIDLHTQFNTDDARQITDQYDKSAEITYAGDEQDRI
VISTKESLDTDQRKELFNQFKDKYSLQDSDLISVDTVTATVGSETARNAVIASAVAVLLMLIYITFRFEFYFGLSAIIAL
LYDITIVIGVYALFQIQVNAPFIAAILTILGYSINDTIVVFDRIRENETRIGMRDINELVNVSVSQTLKRSINTVVTTLL
AILALYIFGVEAIRSFALPLIVGIVSGCYSSIFVASPLWVQFQKRFPNSKSNKKNKKRAVSNTNKGRNKQPQV

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	0	11			263981	326997	18	136:Membrane Protein	15	0	1	2782	0	1
2	DeepTMHMM:inside		inside	1	11			237760	326997	9730	15	0	1	2782	0	2
3	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	11	30			263988	326997	5	136:Membrane Protein	15	0	1	2782	0	3
4	DeepTMHMM:TMhelix		TMhelix	12	30			237761	326997	2056	141:DeepTMHMM: helix	15	0	1	2782	5	4
5	PFAM:PF07549	IPR022646	SecD/SecF GG Motif	26	47	31.6	7.8E-8	263974	326997	4943	15	0	1	2782	0	5
6	PRINTS:PR01755	IPR022645	Bacterial translocase SecF protein signature	30	46			263973	326997	3203	15	0	1	2782	0	6
7	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	30	126			263976	326997	3	136:Membrane Protein	15	0	1	2782	0	7
8	DeepTMHMM:outside		outside	31	126			237762	326997	10025	15	0	1	2782	0	8
9	PFAM:PF02355	IPR022813	Protein export membrane protein	108	285	216.9	0	263975	326997	2538	136:Membrane Protein	15	0	1	2782	0	9
10	SUPERFAMILY:SSF82866		-	109	288			263998	326997	12	15	0	1	2782	0	10
11	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	126	145			263987	326997	5	136:Membrane Protein	15	0	1	2782	0	11
12	DeepTMHMM:TMhelix		TMhelix	127	147			237763	326997	2056	141:DeepTMHMM: helix	15	0	1	2782	5	12
13	PRINTS:PR01755	IPR022645	Bacterial translocase SecF protein signature	143	158			263971	326997	3203	15	0	1	2782	0	13
14	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	145	151			263985	326997	18	136:Membrane Protein	15	0	1	2782	0	14
15	DeepTMHMM:inside		inside	148	154			237764	326997	9730	15	0	1	2782	0	15
16	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	151	175			263994	326997	5	136:Membrane Protein	15	0	1	2782	0	16
17	DeepTMHMM:TMhelix		TMhelix	155	175			237765	326997	2056	141:DeepTMHMM: helix	15	0	1	2782	5	17
18	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	175	180			263978	326997	3	136:Membrane Protein	15	0	1	2782	0	18
19	DeepTMHMM:outside		outside	176	182			237766	326997	10025	15	0	1	2782	0	19
20	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	180	202			263992	326997	5	136:Membrane Protein	15	0	1	2782	0	20
21	DeepTMHMM:TMhelix		TMhelix	183	202			237767	326997	2056	141:DeepTMHMM: helix	15	0	1	2782	5	21
22	PRINTS:PR01755	IPR022645	Bacterial translocase SecF protein signature	191	210			263970	326997	3203	15	0	1	2782	0	22
23	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	202	232			263983	326997	18	136:Membrane Protein	15	0	1	2782	0	23
24	DeepTMHMM:inside		inside	203	231			237768	326997	9730	15	0	1	2782	0	24
25	PRINTS:PR01755	IPR022645	Bacterial translocase SecF protein signature	223	239			263972	326997	3203	15	0	1	2782	0	25
26	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	232	251			263996	326997	5	136:Membrane Protein	15	0	1	2782	0	26
27	DeepTMHMM:TMhelix		TMhelix	232	249			237769	326997	2056	141:DeepTMHMM: helix	15	0	1	2782	5	27
28	DeepTMHMM:outside		outside	250	255			237770	326997	10025	15	0	1	2782	0	28
29	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	251	256			263977	326997	3	136:Membrane Protein	15	0	1	2782	0	29
30	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	256	281			263990	326997	5	136:Membrane Protein	15	0	1	2782	0	30
31	DeepTMHMM:TMhelix		TMhelix	256	276			237771	326997	2056	141:DeepTMHMM: helix	15	0	1	2782	5	31
32	DeepTMHMM:inside		inside	277	314			237772	326997	9730	15	0	1	2782	0	32
33	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	281	314			263980	326997	18	136:Membrane Protein	15	0	1	2782	0	33

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