Cellulosome Database Search

This page is just for checking and is not meant to be part of the public site.

We will take the links to it out when ready.

Genome ifo

GCF_009557615.1: Sphingobacterium sp., dk4302 [-] (ncbi)

Genbanks info:

Genbank_acc: WP_153509544.1:LIMAOEGJ_00476
Genome uid: 89
545217-547283 [+] (688)

Sequence:

DIFNKQRYTITSALPYANGPLHIGHLAGAYIPGDIFVRFLRLNNKDVVYVCGSDEHGAAITIKAKKEGVTPQQIIDKYNQ
QIKESFEQFGISFNIYHRTSEPIHHQLSQEFFLNLYEKGEFVERFSEQYYDEEYHQFLADRYIVGTCPHCGNEGAYGDQC
EKCGTSLNPTDLINPKSTLSGKTPILKETKHWYLPLDKYQPWLEQWLIEGKKNVLKSNVFGQCQSWLKSGLQPRSMTRDL
DWGVDVPLAEAEGKKLYVWLDAPIGYISATKQWAIDEGKDWGLYWKKQANAENESTLIHFIGKDNIVFHCIIFPAILHAH
GDYILPENVPANEFLNLEGDKLSTSRNHAVWLHEYLEEFPGKQDELRYMLTSILPETSDSEFTWKDFQARVNNELVAIFG
NFVNRVMVLSHKYFDGKVLMGSALTDADQAVLNELATFPDLIKQSLSQYRFREALAQFMNAARLGNKYLADEEPWKVFKT
DEERVKTVLFVAGQIVANLAVLGQPFLPFTSTRIFEMLNLAQRDWSAAGNADLLSAGHELGETQLLFDKITDEQVEFQLN
KLAQAKATNALAAPKAPQKANVSFDDFVKMDIRVGRILTAEKIAKTKKLLKLTIDTGIDKRTVVSGIAEYFQPEEIVGKQ
VSILVNLEPREIKGIQSQGMILMAEDADGRLDFVNPTSDISVGSGVR

metG

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	SUPERFAMILY:SSF52374		-	5	395			284039	362765	12	0	0	1	469	0	1
2	CDD:cd00814	IPR033911	MetRS_core	7	383			283933	362765	1805	0	0	1	469	0	2
3	PFAM:PF09334	IPR015413	tRNA synthetases class I (M)	9	408	514.9	0	283928	362765	1798	0	0	1	469	0	3
4	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	10	24			283925	362765	1797	0	0	1	469	0	4
5	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	43	58			283923	362765	1797	0	0	1	469	0	5
6	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	91	103			283920	362765	1797	0	0	1	469	0	6
7	SUPERFAMILY:SSF57770	IPR029038	Methionyl-tRNA synthetase, Zn-domain	143	178			284038	362765	5913	0	0	1	469	0	7
8	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	256	268			283922	362765	1797	0	0	1	469	0	8
9	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	299	315			283924	362765	1797	0	0	1	469	0	9
10	CDD:cd07957	IPR041872	Anticodon_Ia_Met	391	519			283931	362765	1807	0	0	1	469	0	10
11	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	394	406			283921	362765	1797	0	0	1	469	0	11
12	SUPERFAMILY:SSF47323	IPR009080	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	399	599			283934	362765	726	0	0	1	469	0	12
13	PFAM:PF19303	IPR041872	Anticodon binding domain of methionyl tRNA ligase	421	561	73.7	1.4E-20	283926	362765	1803	0	0	1	469	0	13
14	CDD:cd02800	IPR004495	tRNA_bind_EcMetRS_like	582	688			283930	362765	1810	0	0	1	469	0	14
15	SUPERFAMILY:SSF50249	IPR012340	Nucleic acid-binding, OB-fold	582	687			284037	362765	405	0	0	1	469	0	15
16	PROSITE_PROFILES:PS50886	IPR002547	tRNA-binding domain profile.	586	688			283929	362765	1804	0	0	1	469	0	16
17	PFAM:PF01588	IPR002547	Putative tRNA binding domain	592	685	81.9	2.7E-23	283927	362765	1799	0	0	1	469	0	17

↑ Top