Cellulosome Database Search

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Genome ifo

GCF_017549005.1: Ruminococcus sp., RGIG7544 [+] (ncbi)

Genbanks info:

Genbank_acc: WP_296575545.1:PROKKA_01941
Genome uid: 108
7844-14677 [+] (2277)

Sequence:

IRKILGMPARKAISLLAAASVITGQLAGTMLLSATAADLSSTAEIPSHNTYWLGDEERKAGAADEKITADPCLSMDKLTV
PASAAGSKVTMNVYINDENISDEIAYYAYGNVNIDMDARLAASVRKPESGGTSGVNLSASNLSASGYRQVLHMYFTSGHG
KNGVYAAIDVTIPEYAKPGDIFYFNICDTVNNATRLTMYGANASDNILYESEKKPKTADTSGDKLLNGTPYDGYILIDPE
SEAKASSTVKKYDLIVKDSIAYAVYDDHAEVAYGEYEAEKAEILSEINGKKVTSISDSAFAYTKIKSAVISDTVTSIGNF
AFLNSPLEKVTIPNSVTSIGGSAFNGCPLESVTIPDSVTSIGASAFRGSGLKSVEIPDSVTVLKEYTFSGCKSLEKVTLP
SKLEKLMNNVFYFSTALSSLELPDTLTYIGRWTFEATKIKELDIPASVTYIEGDAFGSSNIETINYPDDKTTLPDNAYSG
ASHMGTVKLPSKLTAIPKNAFYNCASLTSVDIPENVTSIGQYAFQSCGVKELALPDSVKTLEPYCFAYSKIESMEIPERF
TELPVGMFNSDGMLSSIKLPSKLTAVPDNMFNGCSRLTGIEFPETVTSIGASALNGSGITELELPKGLKEIYPSAFANTK
LKAVEIHEGITALPTHVFGNCMALESVKLPSALTSISDSAFKGCTALKTLDIPDSVELIGYQAFRECGITELKMPISLKT
LNTYTFEGANLETVIYDDSLTTLPDNAYSCLKNMKSVKLPSKLTALPNHAFYWCAALESIDIPETVTSIGDSAFHGCSAL
KSIELPEALTDIGYYAFYDTIALESIKIPDNVKSIATSTFANSGIRSVVLPKNLESLGASAFFNTSIESVELPSGLKALG
DAAFHNCAALEEIEIPETVTTVGNSAFRGTSLRSVVIPEAVKSINTAYLFMDCTELESVTLPTSVTAISDYAFGNCAKLK
GVDIPEYVTDIRSFAFSGTTFTSLFIPASVTNINPKALDGSKIDTIYGYKGTAAEKYANEHNLKFVESEGRIWNRSDRLP
VGGIYKLGCDVTLSGTASISGILDLDLNGHTINAPAINCSNSSEVIIRDSSAEKTGAVRSTASNNLITSYNKLTIYGGTF
YGYDKGTTYATVRINAGDFELNGGEVIGYSSNALSVRTEKGNVNLAGGKLTFNGSRENISDEDGSAVWLAGNVSGNINIT
GTELHSNYGPAVYTGDSGAKVNISGGKLISDYDYGIKCLGECAVNLSGNISITGKNGGIYIPKDKPVNITGAVTGADTSI
YAEASGAVTNGLGKYVSADVLKNFMPMIKANGELSIDKDGELCIALTEQAQPVTTTAAPTTAATTTTTTTLTTATTSSST
TTTTITTTTTTTTTTTTTTTTTTTSTTTTTTPTTTESTTTTTTAETTTAATTTKSPLIVGSLSMRQMNKTEIEETGIDLS
GAENFNSFSYTIDATYGAAGVVIQRDCIYDSFFDNLYSRIQFTLADGRIIELEDDDDNDTEHNGGQFIEELGAYVYHEQN
AEEEMYMFVDGNCRWLKEFYDVQLFVFNIGGGTVTNCRAALDFQDGLTLVNSERIQELENLDPWVPRVAHWYLRADKAGV
YPPLKAELKGYKNGDRNDPYEKEFSTKDEFRVFTTDAIKMYITIPEYSYFRKDYVFSIEIENRTNAPLYDLDLFVKSLKQ
TSKVTLKDKVDMDLGFINISGEQSQTKKETLQWSGGYDLKVSELLPGRENAAKLEISVKDLWKSVYEKYLSAEIFDANEN
LLYDMLSADPDLFRLDLVRSAYAKYFSELPTEHILRDVVVNFYGAQTPIDCEVIKDSSNAPKFSKQVDIITDTARNRLRD
IFNGPSDPRNELEKFRNDFIFNMNINDEQEVSNAFTDYVNGRYGNGRLRGALNIIGDYFVYHRNHGKLLKNIYVEVDTRH
GAPSAEGAANSVSDSAFELSDINGSKIGEDGKFAVTGDEDIIRVKALKDGVNGTLIYEYADGTKEEQRIHSVKAHQCIST
GGFRVLYAPQGEKAGFAVRVCDVCGELTDCCPIHHEAVAMLSSNEAYADIRYAVEDAVTAGEKTELTLFGNVVVTADVTI
PEYVDVLIADNAVITVKEGCRLIAEGKVTDLSGRNYDLSGNGPVVTDTTTAVSTTTTSTTTTTSTTTTATTTTTAPVTTA
DDKNIASDEQLAKWAVIDYQEKNVKQVGDTDVKTTADGQLEIVLRDKSGKVLDTYTIDPETGEGTNSANEAVSLPQTGNK
TMTNILMAFGALIMIALGLAAVLKSGIFERHKDNEE

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:SIGNAL_PEPTIDE_N_REGION		N-terminal region of a signal peptide.	0	12			1006089	435147	21	135:all secretion /signal peptide, lipo	13	1	1	376	3	1
2	PHOBIUS:SIGNAL_PEPTIDE		Signal peptide region	0	37			1006092	435147	19	135:all secretion /signal peptide, lipo	13	0	1	376	3	2
3	DeepTMHMM:signal		signal	1	37			1055643	435147	2198	13	0	1	376	0	3
4	PHOBIUS:SIGNAL_PEPTIDE_H_REGION		Hydrophobic region of a signal peptide.	12	24			1006093	435147	24	135:all secretion /signal peptide, lipo	13	1	1	376	3	4
5	PHOBIUS:SIGNAL_PEPTIDE_C_REGION		C-terminal region of a signal peptide.	24	37			1006087	435147	26	135:all secretion /signal peptide, lipo	13	1	1	376	3	5
6	SIGNALP6:SP		SP	37	38	0		1046869	435147	1978	135:all secretion /signal peptide, lipo	13	0	1	376	0	6
7	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	37	2245			1006090	435147	3	136:Membrane Protein	13	0	1	376	0	7
8	DeepTMHMM:outside		outside	38	2251			1055644	435147	10025	13	0	1	376	0	8
9	PFAM:PF13306	IPR026906	BspA type Leucine rich repeat region (6 copies)	359	482	106.8	7.1E-31	1006085	435147	3538	13	0	1	376	0	9
10	SUPERFAMILY:SSF52058		-	373	528			1006095	435147	12	13	0	1	376	0	10
11	SUPERFAMILY:SSF52058		-	491	833			1006096	435147	12	13	0	1	376	0	11
12	PFAM:PF13306	IPR026906	BspA type Leucine rich repeat region (6 copies)	585	709	103.6	7.2E-30	1006084	435147	3538	13	0	1	376	0	12
13	PFAM:PF13306	IPR026906	BspA type Leucine rich repeat region (6 copies)	765	891	128.1	1.8E-37	1006086	435147	3538	13	0	1	376	0	13
14	SUPERFAMILY:SSF52058		-	854	988			1006094	435147	12	13	0	1	376	0	14
15	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	2245	2264			1006091	435147	5	136:Membrane Protein	13	0	1	376	0	15
16	DeepTMHMM:TMhelix		TMhelix	2252	2262			1055645	435147	2056	141:DeepTMHMM: helix	13	0	1	376	5	16
17	DeepTMHMM:inside		inside	2263	2277			1055646	435147	9730	13	0	1	376	0	17
18	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	2264	2277			1006088	435147	18	136:Membrane Protein	13	0	1	376	0	18

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