Cellulosome Database Search

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Genome ifo

GCF_019977655.1: Clostridium gelidum, C5S11 [+] (ncbi)

Genbanks info:

Genbank_acc: WP_224036571.1:PROKKA_01053
Genome uid: 133
1127935-1129386 [+] (483)

Sequence:

ETNNINTKGVVLTPNVKTIPLIISIMVGVTICFIPRPAEIPQNGWHLLAVFMSIIVACAIGATSVGLAAFIGIFVLTFTH
IITVQTAFSSYSESLIWLIVCADCLSMGITNTGLGQRIAYNIIKIIGKRTIGAGYALVLCEIILGAFVPSATSRSAGIVL
PIAKSLAEGYGSKAEDGTQKKAGEFLLLTALHSNFISSSFFMTASAVNFLAITMAKGLGVDSNISLQTWFLVGLGPCFIG
FITIPLIIYFICPPEIKKVDNVKNIMDEKLKELGEIKKSEKIMIVLFITVLLLWMFGSKLNIDSTTVAVLGLVVAISTGI
VSWKQFTGKKEIWDLLIWQGSFMMMSSQLNKFGIVDWISGLVKHNISGVSWQIALFIVALAMYYSHYLFASNTVHFTALF
SAFLAILISVGAPPIISIILLTNMSALSSGLTHYAVAHGSVFFATGYINQKKWWKVGFIVSISHIIIWYGVGMLWWKLIG
LY

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	0	19			1815688	510198	3	136:Membrane Protein	15	0	1	983	0	1
2	DeepTMHMM:inside		inside	1	19			1795498	510198	9730	15	0	1	983	0	2
3	PFAM:PF00939	IPR001898	Sodium:sulfate symporter transmembrane region	17	481	386.7	0	1815682	510198	5197	137:Transmembrane	15	0	1	983	0	3
4	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	19	36			1815700	510198	5	136:Membrane Protein	15	0	1	983	0	4
5	DeepTMHMM:TMhelix		TMhelix	20	35			1795499	510198	2056	141:DeepTMHMM: helix	15	0	1	983	5	5
6	DeepTMHMM:outside		outside	36	47			1795678	510198	10025	15	0	1	983	0	6
7	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	36	47			1815690	510198	18	136:Membrane Protein	15	0	1	983	0	7
8	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	47	76			1815698	510198	5	136:Membrane Protein	15	0	1	983	0	8
9	DeepTMHMM:TMhelix		TMhelix	48	61			1795681	510198	2056	141:DeepTMHMM: helix	15	0	1	983	5	9
10	DeepTMHMM:inside		inside	62	65			1795683	510198	9730	15	0	1	983	0	10
11	DeepTMHMM:TMhelix		TMhelix	66	76			1795684	510198	2056	141:DeepTMHMM: helix	15	0	1	983	5	11
12	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	76	95			1815683	510198	3	136:Membrane Protein	15	0	1	983	0	12
13	DeepTMHMM:outside		outside	77	96			1795686	510198	10025	15	0	1	983	0	13
14	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	95	115			1815699	510198	5	136:Membrane Protein	15	0	1	983	0	14
15	DeepTMHMM:TMhelix		TMhelix	97	106			1795688	510198	2056	141:DeepTMHMM: helix	15	0	1	983	5	15
16	DeepTMHMM:inside		inside	107	196			1795689	510198	9730	15	0	1	983	0	16
17	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	115	185			1815693	510198	18	136:Membrane Protein	15	0	1	983	0	17
18	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	185	210			1815706	510198	5	136:Membrane Protein	15	0	1	983	0	18
19	DeepTMHMM:TMhelix		TMhelix	197	206			1795691	510198	2056	141:DeepTMHMM: helix	15	0	1	983	5	19
20	DeepTMHMM:outside		outside	207	229			1795693	510198	10025	15	0	1	983	0	20
21	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	210	229			1815684	510198	3	136:Membrane Protein	15	0	1	983	0	21
22	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	229	252			1815702	510198	5	136:Membrane Protein	15	0	1	983	0	22
23	DeepTMHMM:TMhelix		TMhelix	230	250			1795695	510198	2056	141:DeepTMHMM: helix	15	0	1	983	5	23
24	DeepTMHMM:inside		inside	251	282			1795697	510198	9730	15	0	1	983	0	24
25	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	252	282			1815695	510198	18	136:Membrane Protein	15	0	1	983	0	25
26	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	282	301			1815697	510198	5	136:Membrane Protein	15	0	1	983	0	26
27	DeepTMHMM:TMhelix		TMhelix	283	297			1795699	510198	2056	141:DeepTMHMM: helix	15	0	1	983	5	27
28	DeepTMHMM:outside		outside	298	306			1795701	510198	10025	15	0	1	983	0	28
29	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	301	306			1815686	510198	3	136:Membrane Protein	15	0	1	983	0	29
30	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	306	324			1815704	510198	5	136:Membrane Protein	15	0	1	983	0	30
31	DeepTMHMM:TMhelix		TMhelix	307	316			1795703	510198	2056	141:DeepTMHMM: helix	15	0	1	983	5	31
32	DeepTMHMM:inside		inside	317	337			1795710	510198	9730	15	0	1	983	0	32
33	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	324	335			1815694	510198	18	136:Membrane Protein	15	0	1	983	0	33
34	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	335	355			1815696	510198	5	136:Membrane Protein	15	0	1	983	0	34
35	DeepTMHMM:TMhelix		TMhelix	338	347			1795714	510198	2056	141:DeepTMHMM: helix	15	0	1	983	5	35
36	DeepTMHMM:outside		outside	348	373			1795716	510198	10025	15	0	1	983	0	36
37	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	355	366			1815689	510198	3	136:Membrane Protein	15	0	1	983	0	37
38	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	366	385			1815707	510198	5	136:Membrane Protein	15	0	1	983	0	38
39	DeepTMHMM:TMhelix		TMhelix	374	391			1795718	510198	2056	141:DeepTMHMM: helix	15	0	1	983	5	39
40	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	385	396			1815692	510198	18	136:Membrane Protein	15	0	1	983	0	40
41	DeepTMHMM:inside		inside	392	458			1795720	510198	9730	15	0	1	983	0	41
42	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	396	420			1815701	510198	5	136:Membrane Protein	15	0	1	983	0	42
43	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	420	431			1815687	510198	3	136:Membrane Protein	15	0	1	983	0	43
44	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	431	450			1815705	510198	5	136:Membrane Protein	15	0	1	983	0	44
45	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	450	456			1815691	510198	18	136:Membrane Protein	15	0	1	983	0	45
46	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	456	477			1815703	510198	5	136:Membrane Protein	15	0	1	983	0	46
47	DeepTMHMM:TMhelix		TMhelix	459	476			1795722	510198	2056	141:DeepTMHMM: helix	15	0	1	983	5	47
48	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	477	483			1815685	510198	3	136:Membrane Protein	15	0	1	983	0	48
49	DeepTMHMM:outside		outside	477	483			1795724	510198	10025	15	0	1	983	0	49

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