Cellulosome Database Search

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We will take the links to it out when ready.

Genome ifo

GCF_019977655.1: Clostridium gelidum, C5S11 [+] (ncbi)

Genbanks info:

Genbank_acc: WP_224037796.1:PROKKA_02400
Genome uid: 133
2692185-2692634 [+] (149)

Sequence:

VEQVIVAFVASFGFGIIFNIKGKKLIFAAIGGGLSWFCYLYLNNNGMRTILSLFTSSIIFSIYSEICARYLKTPVTTIVI
CALIPLVPGAGMYETMYQTILGNVSGALEIGLNTLASAGVLALGIIFVSTITRQVVNLKRVKEKLFAK

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	0	5			1853178	514629	3	136:Membrane Protein	15	0	1	2325	0	1
2	DeepTMHMM:outside		outside	1	4			1869599	514629	10025	15	0	1	2325	0	2
3	PFAM:PF12821	IPR024528	Threonine/Serine exporter, ThrE	3	132	132.9	7.0E-39	1853169	514629	2759	15	0	1	2325	0	3
4	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	5	21			1853170	514629	5	136:Membrane Protein	15	0	1	2325	0	4
5	DeepTMHMM:TMhelix		TMhelix	5	19			1869600	514629	2056	141:DeepTMHMM: helix	15	0	1	2325	5	5
6	DeepTMHMM:inside		inside	20	25			1869601	514629	9730	15	0	1	2325	0	6
7	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	21	25			1853177	514629	18	136:Membrane Protein	15	0	1	2325	0	7
8	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	25	43			1853174	514629	5	136:Membrane Protein	15	0	1	2325	0	8
9	DeepTMHMM:TMhelix		TMhelix	26	43			1869602	514629	2056	141:DeepTMHMM: helix	15	0	1	2325	5	9
10	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	43	48			1853180	514629	3	136:Membrane Protein	15	0	1	2325	0	10
11	DeepTMHMM:outside		outside	44	50			1869603	514629	10025	15	0	1	2325	0	11
12	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	48	69			1853173	514629	5	136:Membrane Protein	15	0	1	2325	0	12
13	DeepTMHMM:TMhelix		TMhelix	51	71			1869604	514629	2056	141:DeepTMHMM: helix	15	0	1	2325	5	13
14	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	69	75			1853176	514629	18	136:Membrane Protein	15	0	1	2325	0	14
15	DeepTMHMM:inside		inside	72	79			1869605	514629	9730	15	0	1	2325	0	15
16	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	75	94			1853171	514629	5	136:Membrane Protein	15	0	1	2325	0	16
17	DeepTMHMM:TMhelix		TMhelix	80	97			1869606	514629	2056	141:DeepTMHMM: helix	15	0	1	2325	5	17
18	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	94	113			1853179	514629	3	136:Membrane Protein	15	0	1	2325	0	18
19	DeepTMHMM:outside		outside	98	115			1869607	514629	10025	15	0	1	2325	0	19
20	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	113	133			1853172	514629	5	136:Membrane Protein	15	0	1	2325	0	20
21	DeepTMHMM:TMhelix		TMhelix	116	132			1869608	514629	2056	141:DeepTMHMM: helix	15	0	1	2325	5	21
22	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	133	149			1853175	514629	18	136:Membrane Protein	15	0	1	2325	0	22
23	DeepTMHMM:inside		inside	133	149			1869609	514629	9730	15	0	1	2325	0	23

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