Cellulosome Database Search

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Genome ifo

GCF_000178835.2: Cellulosilyticum lentocellum, DSM 5427 [+] (ncbi)

Genbanks info:

Genbank_acc: WP_013658048.1:PROKKA_03173
Genome uid: 137
3330726-3331613 [+] (295)

Sequence:

KILGVLVKRHMLMYLKDKQNVFFSFLSMLIILALNTVFLGDVNIKYLQEFANIEKAKALYVTNSWLMAGIMIVNAVMISC
TMLGIMIKDEEDHKLQGFLVAPISRFKLVLSYIIAATITAFAFGIATFIFSQFYILGVGGSLLSPLRMLAVMGVMLVNIV
SSVAMLFCITSFVHTMNSYGALTTTLGTLIGFVSAIYLPMGSLPESVQSVLKGFPILYGTAMMRELYTAPAINTVFEGAP
TEAISLYKEYMGVSITWGDTQMSNGMSLLILLGSAIIFTILAGVIAKKRRISDR

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	0	20			1986523	588786	18	136:Membrane Protein	15	0	1	3061	0	1
2	DeepTMHMM:inside		inside	1	21			2006170	588786	9730	15	0	1	3061	0	2
3	PFAM:PF01061	IPR013525	ABC-2 type transporter	4	227	38.2	9.9E-10	1986517	588786	3716	15	0	1	3061	0	3
4	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	20	41			1986533	588786	5	136:Membrane Protein	15	0	1	3061	0	4
5	DeepTMHMM:TMhelix		TMhelix	22	40			2006172	588786	2056	141:DeepTMHMM: helix	15	0	1	3061	5	5
6	DeepTMHMM:outside		outside	41	66			2006225	588786	10025	15	0	1	3061	0	6
7	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	41	65			1986541	588786	3	136:Membrane Protein	15	0	1	3061	0	7
8	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	65	88			1986539	588786	5	136:Membrane Protein	15	0	1	3061	0	8
9	DeepTMHMM:TMhelix		TMhelix	67	80			2006229	588786	2056	141:DeepTMHMM: helix	15	0	1	3061	5	9
10	DeepTMHMM:inside		inside	81	113			2006233	588786	9730	15	0	1	3061	0	10
11	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	88	108			1986520	588786	18	136:Membrane Protein	15	0	1	3061	0	11
12	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	108	137			1986535	588786	5	136:Membrane Protein	15	0	1	3061	0	12
13	DeepTMHMM:TMhelix		TMhelix	114	138			2006235	588786	2056	141:DeepTMHMM: helix	15	0	1	3061	5	13
14	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	137	148			1986542	588786	3	136:Membrane Protein	15	0	1	3061	0	14
15	DeepTMHMM:outside		outside	139	148			2006237	588786	10025	15	0	1	3061	0	15
16	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	148	173			1986531	588786	5	136:Membrane Protein	15	0	1	3061	0	16
17	DeepTMHMM:TMhelix		TMhelix	149	170			2006240	588786	2056	141:DeepTMHMM: helix	15	0	1	3061	5	17
18	DeepTMHMM:inside		inside	171	178			2006242	588786	9730	15	0	1	3061	0	18
19	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	173	179			1986529	588786	18	136:Membrane Protein	15	0	1	3061	0	19
20	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	179	199			1986540	588786	5	136:Membrane Protein	15	0	1	3061	0	20
21	DeepTMHMM:TMhelix		TMhelix	179	199			2006243	588786	2056	141:DeepTMHMM: helix	15	0	1	3061	5	21
22	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	199	266			1986543	588786	3	136:Membrane Protein	15	0	1	3061	0	22
23	DeepTMHMM:outside		outside	200	265			2006244	588786	10025	15	0	1	3061	0	23
24	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	266	287			1986537	588786	5	136:Membrane Protein	15	0	1	3061	0	24
25	DeepTMHMM:TMhelix		TMhelix	266	286			2006245	588786	2056	141:DeepTMHMM: helix	15	0	1	3061	5	25
26	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	287	295			1986526	588786	18	136:Membrane Protein	15	0	1	3061	0	26
27	DeepTMHMM:inside		inside	287	295			2006246	588786	9730	15	0	1	3061	0	27

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