Cellulosome Database Search

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Genome ifo

GCF_000175795.2: Ruminiclostridium papyrosolvens, DSM 2782 [+] (ncbi)

Genbanks info:

Genbank_acc: WP_004616877.1:EIPGKKII_03330
Genome uid: 12
21812-23548 [+] (578)

Sequence:

WMRYILPGTNAIVSFITIIALLLRKNKNAIEKSYITLSLFWLNWSVGIIFTVKWGLAPFGEYLYWIKNISAFAMGPIWLV
FSFYYTNSRIIRNNKWRMVNIFFLVVPSLIMYIISITNKYHGAFLAYDYARLRVAGYKWGFWVHMILQYVYIFAGCYFIW
VHGMRSRSYIRKRSFIIVGGTLFSQIIIIAYYLSGIYLIYNDIDIAPSVFLIVMICIFIASVKYKFLNLLPMALPKIMRN
LREGIIIVDLEGKISSQNTAFYNMFNNFINIEEVNAKEFSRELLNKCLCDENGKKAVKAIREGGYEGIKGEVALTSEIYF
QINYQPLFDKNEFMGAVVSFYDIGEHKLLTKQLNEKNNRLLEANIRLQEHAKVVKELVIAQERNKFASEIHDSVGHSLSV
LGALLEVCRLSFSEKPEQTYKKIETALNISKKALGELRLSVSNFTSPSFERTPLFESIESMIHCFEQTGIKVDFTLHGNT
IHPLDKEVSNTVFNICREALTNSLKHGNAKTINIIFNINNNNLVLFIFDDGKGCSNPLKGIGLSGMENRVKNLNGSIAFG
SGGETGFSIHVEIPLSD

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	0	5			466228	6896	3	136:Membrane Protein	15	0	1	486	0	1
2	DeepTMHMM:outside		outside	1	2			469125	6896	10025	15	0	1	486	0	2
3	DeepTMHMM:TMhelix		TMhelix	3	23			469126	6896	2056	141:DeepTMHMM: helix	15	0	1	486	5	3
4	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	5	24			466222	6896	5	136:Membrane Protein	15	0	1	486	0	4
5	PFAM:PF16927	IPR031621	N-terminal 7TM region of histidine kinase	11	232	72.9	3.7E-20	466181	6896	3732	15	0	1	486	0	5
6	DeepTMHMM:inside		inside	24	34			469127	6896	9730	15	0	1	486	0	6
7	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	24	35			466224	6896	18	136:Membrane Protein	15	0	1	486	0	7
8	DeepTMHMM:TMhelix		TMhelix	35	53			469128	6896	2056	141:DeepTMHMM: helix	15	0	1	486	5	8
9	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	35	57			466220	6896	5	136:Membrane Protein	15	0	1	486	0	9
10	DeepTMHMM:outside		outside	54	69			469129	6896	10025	15	0	1	486	0	10
11	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	57	62			466230	6896	3	136:Membrane Protein	15	0	1	486	0	11
12	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	62	87			466217	6896	5	136:Membrane Protein	15	0	1	486	0	12
13	DeepTMHMM:TMhelix		TMhelix	70	81			469130	6896	2056	141:DeepTMHMM: helix	15	0	1	486	5	13
14	DeepTMHMM:inside		inside	82	99			469131	6896	9730	15	0	1	486	0	14
15	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	87	98			466225	6896	18	136:Membrane Protein	15	0	1	486	0	15
16	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	98	122			466221	6896	5	136:Membrane Protein	15	0	1	486	0	16
17	DeepTMHMM:TMhelix		TMhelix	100	117			469132	6896	2056	141:DeepTMHMM: helix	15	0	1	486	5	17
18	DeepTMHMM:outside		outside	118	139			469133	6896	10025	15	0	1	486	0	18
19	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	122	141			466229	6896	3	136:Membrane Protein	15	0	1	486	0	19
20	DeepTMHMM:TMhelix		TMhelix	140	161			469134	6896	2056	141:DeepTMHMM: helix	15	0	1	486	5	20
21	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	141	164			466218	6896	5	136:Membrane Protein	15	0	1	486	0	21
22	DeepTMHMM:inside		inside	162	176			469135	6896	9730	15	0	1	486	0	22
23	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	164	175			466223	6896	18	136:Membrane Protein	15	0	1	486	0	23
24	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	175	200			466216	6896	5	136:Membrane Protein	15	0	1	486	0	24
25	DeepTMHMM:TMhelix		TMhelix	177	192			469141	6896	2056	141:DeepTMHMM: helix	15	0	1	486	5	25
26	DeepTMHMM:outside		outside	193	205			469142	6896	10025	15	0	1	486	0	26
27	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	200	205			466227	6896	3	136:Membrane Protein	15	0	1	486	0	27
28	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	205	223			466219	6896	5	136:Membrane Protein	15	0	1	486	0	28
29	DeepTMHMM:TMhelix		TMhelix	206	221			469143	6896	2056	141:DeepTMHMM: helix	15	0	1	486	5	29
30	DeepTMHMM:inside		inside	222	578			469144	6896	9730	15	0	1	486	0	30
31	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	223	578			466226	6896	18	136:Membrane Protein	15	0	1	486	0	31
32	SUPERFAMILY:SSF55785	IPR035965	PAS domain superfamily	243	354			466233	6896	289	15	0	1	486	0	32
33	PFAM:PF07730	IPR011712	Histidine kinase	382	446	48.4	9.9E-13	466185	6896	1640	15	0	1	486	0	33
34	SUPERFAMILY:SSF55874	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	462	576			466232	6896	122	15	0	1	486	0	34
35	CDD:cd16917		HATPase_UhpB-NarQ-NarX-like	492	575			466231	6896	3645	15	0	1	486	0	35

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