Cellulosome Database Search

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Genome ifo

Gs0159231: Syntrophomonas erecta sporosyntropha, JCM 13344 [-] (ncbi)

Genbanks info:

Genbank_acc: PROKKA_01984
Genome uid: 222
2040916-2041659 [+] (247)

Sequence:

IENSQRDINIAFMNELSIIFNKLGIDTKAVLEAAGTKWNFLNFFPGLVGGHCIGVDPYYLTYKAEQIGYHSQIILSGRRI
NDDMGKYVVENTVKKMIQANKPIKGANVAILGITFKEDCPDSRNTRVIDIIKELKEYGVNVQVIDPVADAQEVEEEYGIH
LNRLEDLRGVDAVIFAVAHDDFINLSLEEIKDWYRACPNHLFSAINDEVAATIENGCGNIKNVLIDVKGIFDRKEAEELD
YLYWRL

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:SIGNAL_PEPTIDE		Signal peptide region	0	21			665183	943176	19	135:all secretion /signal peptide, lipo	0	0	1	1933	3	1
2	PHOBIUS:SIGNAL_PEPTIDE_N_REGION		N-terminal region of a signal peptide.	0	4			665190	943176	21	135:all secretion /signal peptide, lipo	0	0	1	1933	3	2
3	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	0	102			1595458	943176	18	136:Membrane Protein	0	0	1	1933	0	3
4	PROSITE_PROFILES:PS51257		Prokaryotic membrane lipoprotein lipid attachment site profile.	0	18			1295446	943176	54	135:all secretion /signal peptide, lipo	0	0	1	1933	0	4
5	PHOBIUS:SIGNAL_PEPTIDE		Signal peptide region	0	26			1295441	943176	19	135:all secretion /signal peptide, lipo	0	0	1	1933	3	5
6	PHOBIUS:SIGNAL_PEPTIDE_N_REGION		N-terminal region of a signal peptide.	0	3			1295442	943176	21	135:all secretion /signal peptide, lipo	0	0	1	1933	3	6
7	SUPERFAMILY:SSF48179	IPR008927	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	1	85			2734462	943176	1085	0	0	0	1933	0	7
8	PFAM:PF00984	IPR014026	UDP-glucose/GDP-mannose dehydrogenase family, central domain	1	83	71.9	3.7E-20	2734460	943176	2186	0	0	0	1933	0	8
9	DeepTMHMM:inside		inside	1	106			1591837	943176	9730	0	0	1	1933	0	9
10	PHOBIUS:SIGNAL_PEPTIDE_H_REGION		Hydrophobic region of a signal peptide.	3	15			1295444	943176	24	135:all secretion /signal peptide, lipo	0	0	1	1933	3	10
11	PHOBIUS:SIGNAL_PEPTIDE_H_REGION		Hydrophobic region of a signal peptide.	4	16			665187	943176	24	135:all secretion /signal peptide, lipo	0	0	1	1933	3	11
12	PHOBIUS:SIGNAL_PEPTIDE_C_REGION		C-terminal region of a signal peptide.	15	26			1295443	943176	26	135:all secretion /signal peptide, lipo	0	0	1	1933	3	12
13	PHOBIUS:SIGNAL_PEPTIDE_C_REGION		C-terminal region of a signal peptide.	16	21			665181	943176	26	135:all secretion /signal peptide, lipo	0	0	1	1933	3	13
14	SIGNALP6:LIPO		LIPO	17	18	0		1278628	943176	1979	135:all secretion /signal peptide, lipo	0	0	1	1933	0	14
15	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	21	53			665178	943176	3	136:Membrane Protein	0	0	1	1933	0	15
16	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	26	446			1295445	943176	3	136:Membrane Protein	0	0	1	1933	0	16
17	PFAM:PF13276	IPR025948	HTH-like domain	49	103	46.1	3.9E-12	1016657	943176	655	0	0	1	1933	0	17
18	SUPERFAMILY:SSF52413	IPR036220	UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily	92	234			2734461	943176	2188	0	0	0	1933	0	18
19	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	102	124			1595386	943176	5	136:Membrane Protein	0	0	1	1933	0	19
20	PROSITE_PROFILES:PS50994	IPR001584	Integrase catalytic domain profile.	104	284			1016658	943176	656	0	0	1	1933	0	20
21	DeepTMHMM:TMhelix		TMhelix	107	124			1591841	943176	2056	141:DeepTMHMM: helix	0	0	1	1933	6	21
22	PFAM:PF03720	IPR014027	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain	109	195	70.9	9.9E-20	2734459	943176	2187	0	0	0	1933	0	22
23	SMART:SM00984	IPR014027		109	200			2734458	943176	1	0	0	0	1933	0	23
24	PFAM:PF00665	IPR001584	Integrase core domain	119	222	66.1	2.7E-18	1016655	943176	74	0	0	1	1933	0	24
25	SUPERFAMILY:SSF53098	IPR012337	Ribonuclease H-like superfamily	120	280			1016659	943176	34	0	0	1	1933	0	25
26	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	124	163			1595388	943176	3	136:Membrane Protein	0	0	1	1933	0	26
27	DeepTMHMM:outside		outside	125	168			1591844	943176	10025	0	0	1	1933	0	27
28	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	163	183			1595387	943176	5	136:Membrane Protein	0	0	1	1933	0	28
29	DeepTMHMM:TMhelix		TMhelix	169	184			1591847	943176	2056	141:DeepTMHMM: helix	0	0	1	1933	6	29
30	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	183	189			1595455	943176	18	136:Membrane Protein	0	0	1	1933	0	30
31	DeepTMHMM:inside		inside	185	187			1591848	943176	9730	0	0	1	1933	0	31
32	DeepTMHMM:TMhelix		TMhelix	188	205			1591850	943176	2056	141:DeepTMHMM: helix	0	0	1	1933	6	32
33	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	189	207			1595382	943176	5	136:Membrane Protein	0	0	1	1933	0	33
34	DeepTMHMM:outside		outside	206	213			1591851	943176	10025	0	0	1	1933	0	34
35	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	207	212			1595390	943176	3	136:Membrane Protein	0	0	1	1933	0	35
36	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	212	229			1595384	943176	5	136:Membrane Protein	0	0	1	1933	0	36
37	DeepTMHMM:TMhelix		TMhelix	214	228			1591854	943176	2056	141:DeepTMHMM: helix	0	0	1	1933	6	37
38	PFAM:PF13333	IPR001584	Integrase core domain	228	280	27.4	2.9E-6	1016656	943176	74	0	0	1	1933	0	38
39	DeepTMHMM:inside		inside	229	234			1591856	943176	9730	0	0	1	1933	0	39
40	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	229	235			1595463	943176	18	136:Membrane Protein	0	0	1	1933	0	40
41	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	235	252			1595383	943176	5	136:Membrane Protein	0	0	1	1933	0	41
42	DeepTMHMM:TMhelix		TMhelix	235	252			1591859	943176	2056	141:DeepTMHMM: helix	0	0	1	1933	6	42
43	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	252	257			1595389	943176	3	136:Membrane Protein	0	0	1	1933	0	43
44	DeepTMHMM:outside		outside	253	262			1591862	943176	10025	0	0	1	1933	0	44
45	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	257	279			1595385	943176	5	136:Membrane Protein	0	0	1	1933	0	45
46	DeepTMHMM:TMhelix		TMhelix	263	279			1591864	943176	2056	141:DeepTMHMM: helix	0	0	1	1933	6	46
47	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	279	528			1595460	943176	18	136:Membrane Protein	0	0	1	1933	0	47
48	DeepTMHMM:inside		inside	280	528			1591867	943176	9730	0	0	1	1933	0	48
49	PFAM:PF07730	IPR011712	Histidine kinase	303	367	54.4	1.4E-14	1595381	943176	1640	0	0	1	1933	0	49
50	SUPERFAMILY:SSF55874	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	423	521			1595469	943176	122	0	0	1	1933	0	50
51	SMART:SM00387	IPR003594		429	523			1595379	943176	1	0	0	1	1933	0	51
52	CDD:cd16917		HATPase_UhpB-NarQ-NarX-like	434	520			1595467	943176	3645	0	0	1	1933	0	52
53	PFAM:PF02518	IPR003594	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	434	521	27.6	3.3E-6	1595380	943176	99	0	0	1	1933	0	53
54	PROSITE_PROFILES:PS50109	IPR005467	Histidine kinase domain profile.	436	523			1595465	943176	103	0	0	1	1933	0	54

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