Cellulosome Database Search

This page is just for checking and is not meant to be part of the public site.

We will take the links to it out when ready.

Genome ifo

GCF_032475255.1: Clostridium sp., na [+] (ncbi)

Genbanks info:

Genbank_acc: PROKKA_01760
Genome uid: 234
61922-63229 [+] (435)

Sequence:

AHNKLYRNFIILQEDEKTHAASGEKALSGYAKIEAKGDKCKISFYAQNLKKEEKYSILLICYKKDMKQIVDLGVLEISDI
GKGEASKEYYVNNIAGLDFSYDKVSGAAICKYVGGELTYLMYGFMNGENVGDSWKKCKVLKHIDKNKEDIEVKEVKEVKK
EVKKEVKEEVKKVEEVKCVEPEHKEHHEEKEHKDHHEDKSKDEMKDKCKDEMKDNDKDHHEEVKKKEKHDECKDDHHKEE
KEDKCENINYCDQKYTENMGCMGVCKKRDQIESEEYRFDEYEAQIVEEKELDPYDFEMRGSLGEFFENIIKDFEEVKNKF
KEIKYCKWYKVNIKSLDDMCNISNYNKYTIAYYPMLNYYPYIKKYGYFMLGYKCDEKGNLKYIVYGVPGKKDKDEQPYAG
KTGFVTWMSGDKDKEGCWLMFYDYKNSTVVVPMK

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	SUPERFAMILY:SSF88659	IPR013324	RNA polymerase sigma factor, region 3/4-like	0	93			2710061	990079	595	0	0	0	1334	0	1
2	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	0	11			2479832	990079	18	136:Membrane Protein	13	0	0	1334	0	2
3	PHOBIUS:SIGNAL_PEPTIDE_N_REGION		N-terminal region of a signal peptide.	0	2			664254	990079	21	135:all secretion /signal peptide, lipo	13	0	1	1334	3	3
4	PHOBIUS:SIGNAL_PEPTIDE		Signal peptide region	0	17			664255	990079	19	135:all secretion /signal peptide, lipo	13	0	1	1334	3	4
5	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	0	166			2669923	990079	18	136:Membrane Protein	0	0	0	1334	0	5
6	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	0	6			2228724	990079	18	136:Membrane Protein	13	0	0	1334	0	6
7	PFAM:PF04297	IPR007394	Putative helix-turn-helix protein, YlxM / p13 like	1	79	89.4	1.4E-25	2710060	990079	3039	0	0	0	1334	0	7
8	DeepTMHMM:inside		inside	1	11			2499872	990079	9730	13	0	0	1334	0	8
9	DeepTMHMM:inside		inside	1	6			2243732	990079	9730	13	0	0	1334	0	9
10	DeepTMHMM:inside		inside	1	168			2680961	990079	9730	0	0	0	1334	0	10
11	PHOBIUS:SIGNAL_PEPTIDE_H_REGION		Hydrophobic region of a signal peptide.	2	13			664253	990079	24	135:all secretion /signal peptide, lipo	13	0	1	1334	3	11
12	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	6	24			2228721	990079	5	136:Membrane Protein	13	0	0	1334	0	12
13	DeepTMHMM:TMhelix		TMhelix	7	24			2243733	990079	2056	141:DeepTMHMM: helix	13	0	0	1334	6	13
14	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	11	38			2479830	990079	5	136:Membrane Protein	13	0	0	1334	0	14
15	DeepTMHMM:TMhelix		TMhelix	12	33			2499873	990079	2056	141:DeepTMHMM: helix	13	0	0	1334	6	15
16	PHOBIUS:SIGNAL_PEPTIDE_C_REGION		C-terminal region of a signal peptide.	13	17			664252	990079	26	135:all secretion /signal peptide, lipo	13	0	1	1334	3	16
17	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	17	764			664256	990079	3	136:Membrane Protein	13	0	1	1334	0	17
18	SIGNALP6:SP		SP	17	18	0		576644	990079	1978	135:all secretion /signal peptide, lipo	13	0	1	1334	0	18
19	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	24	43			2228723	990079	3	136:Membrane Protein	13	0	0	1334	0	19
20	DeepTMHMM:outside		outside	25	43			2243734	990079	10025	13	0	0	1334	0	20
21	DeepTMHMM:outside		outside	34	179			2499874	990079	10025	13	0	0	1334	0	21
22	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	38	177			2479829	990079	3	136:Membrane Protein	13	0	0	1334	0	22
23	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	43	61			2228722	990079	5	136:Membrane Protein	13	0	0	1334	0	23
24	DeepTMHMM:TMhelix		TMhelix	44	56			2243735	990079	2056	141:DeepTMHMM: helix	13	0	0	1334	6	24
25	DeepTMHMM:inside		inside	57	63			2243736	990079	9730	13	0	0	1334	0	25
26	SUPERFAMILY:SSF110581	IPR022830	Indigoidine synthase A-like	57	260			2732215	990079	9729	0	0	0	1334	0	26
27	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	61	63			2228725	990079	18	136:Membrane Protein	13	0	0	1334	0	27
28	PRINTS:PR00812	IPR003004	Bacterial general secretion pathway protein F signature	61	74			2669913	990079	347	0	0	0	1334	0	28
29	PFAM:PF00482	IPR018076	Type II secretion system (T2SS), protein F	66	188	92.9	1.3E-26	2669916	990079	349	0	0	0	1334	0	29
30	SUPERFAMILY:SSF48230	IPR008929	Chondroitin AC/alginate lyase	67	313			664257	990079	4809	13	0	1	1334	0	30
31	PFAM:PF04227	IPR007342	Indigoidine synthase A like protein	73	260	56.1	3.5E-15	2732214	990079	9728	0	0	0	1334	0	31
32	PRINTS:PR00812	IPR003004	Bacterial general secretion pathway protein F signature	159	188			2669914	990079	347	0	0	0	1334	0	32
33	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	166	187			2669920	990079	5	136:Membrane Protein	0	0	0	1334	0	33
34	DeepTMHMM:TMhelix		TMhelix	169	187			2680962	990079	2056	141:DeepTMHMM: helix	0	0	0	1334	6	34
35	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	177	201			2479831	990079	5	136:Membrane Protein	13	0	0	1334	0	35
36	DeepTMHMM:TMhelix		TMhelix	180	201			2499875	990079	2056	141:DeepTMHMM: helix	13	0	0	1334	6	36
37	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	187	206			2669918	990079	3	136:Membrane Protein	0	0	0	1334	0	37
38	DeepTMHMM:outside		outside	188	212			2680963	990079	10025	0	0	0	1334	0	38
39	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	201	488			2479833	990079	18	136:Membrane Protein	13	0	0	1334	0	39
40	DeepTMHMM:inside		inside	202	488			2499876	990079	9730	13	0	0	1334	0	40
41	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	206	233			2669919	990079	5	136:Membrane Protein	0	0	0	1334	0	41
42	DeepTMHMM:TMhelix		TMhelix	213	233			2680964	990079	2056	141:DeepTMHMM: helix	0	0	0	1334	6	42
43	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	233	370			2669922	990079	18	136:Membrane Protein	0	0	0	1334	0	43
44	DeepTMHMM:inside		inside	234	363			2680965	990079	9730	0	0	0	1334	0	44
45	SUPERFAMILY:SSF47384	IPR036097	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	243	326			2479837	990079	108	13	0	0	1334	0	45
46	CDD:cd00082	IPR003661	HisKA	256	321			2479836	990079	356	13	0	0	1334	0	46
47	SMART:SM00388	IPR003661		258	325			2479825	990079	1	13	0	0	1334	0	47
48	PFAM:PF00512	IPR003661	His Kinase A (phospho-acceptor) domain	261	325	49.8	2.6E-13	2479827	990079	355	13	0	0	1334	0	48
49	PROSITE_PROFILES:PS50109	IPR005467	Histidine kinase domain profile.	265	483			2479834	990079	103	13	0	0	1334	0	49
50	PFAM:PF00482	IPR018076	Type II secretion system (T2SS), protein F	267	389	67.9	7.5E-19	2669915	990079	349	0	0	0	1334	0	50
51	SUPERFAMILY:SSF55874	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	314	481			2479838	990079	122	13	0	0	1334	0	51
52	PFAM:PF07940	IPR012480	Heparinase II/III-like protein	357	530	83.5	1.6E-23	664251	990079	4808	13	0	1	1334	0	52
53	PRINTS:PR00812	IPR003004	Bacterial general secretion pathway protein F signature	362	377			2669911	990079	347	0	0	0	1334	0	53
54	DeepTMHMM:TMhelix		TMhelix	364	392			2680966	990079	2056	141:DeepTMHMM: helix	0	0	0	1334	6	54
55	SMART:SM00387	IPR003594		369	483			2479826	990079	1	13	0	0	1334	0	55
56	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	370	394			2669921	990079	5	136:Membrane Protein	0	0	0	1334	0	56
57	PFAM:PF02518	IPR003594	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	370	482	65.5	5.5E-18	2479828	990079	99	13	0	0	1334	0	57
58	CDD:cd00075		HATPase	374	479			2479835	990079	456	13	0	0	1334	0	58
59	PRINTS:PR00812	IPR003004	Bacterial general secretion pathway protein F signature	378	398			2669912	990079	347	0	0	0	1334	0	59
60	DeepTMHMM:outside		outside	393	399			2680967	990079	10025	0	0	0	1334	0	60
61	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	394	399			2669917	990079	3	136:Membrane Protein	0	0	0	1334	0	61
62	PRINTS:PR00344	IPR004358	Bacterial sensor protein C-terminal signature	407	422			2479822	990079	95	13	0	0	1334	0	62
63	PRINTS:PR00344	IPR004358	Bacterial sensor protein C-terminal signature	425	436			2479824	990079	95	13	0	0	1334	0	63
64	PRINTS:PR00344	IPR004358	Bacterial sensor protein C-terminal signature	442	461			2479823	990079	95	13	0	0	1334	0	64
65	PRINTS:PR00344	IPR004358	Bacterial sensor protein C-terminal signature	466	480			2479821	990079	95	13	0	0	1334	0	65

↑ Top