Cellulosome Database Search

This page is just for checking and is not meant to be part of the public site.

We will take the links to it out when ready.

Genome ifo

GCF_032473275.1: Clostridium sp., na [+] (ncbi)

Genbanks info:

Genbank_acc: WP_111931363.1:PROKKA_02581
Genome uid: 236
106397-108340 [+] (647)

Sequence:

CKKTYYITTPIYYPSTKLHIGNTYTTVAADALARYKRLTGYDVMFLTGTDEHGQKIQRIAEEKGITPKEHVDEIVSGIKD
LWKMMNISYDKFIRTTDDYHIKAVQDIFKKLYDKGDIYKSSYEGLYCTPCESFWTETQLVNGNCPDCGRPVEKSKEEAYF
FKMSNYADKLMEYIETHPDFIQPESRKNEMVNNFLKPGLQDLCVSRTSFNWGVPVTFDENHVVYVWIDALSNYITALGYG
SDNKDLYDKYWPADVHLIGKDILRFHTIYWPIMLMALDLPLPKQVFGHGWLLVDGGKMSKSKGNVVDPVTLVENFGVDAV
RYYLLREIPFGSDGLFNNEIFIKKINSDLCNDLGNLLSRTVAMIEKYFDGVIPNNNVKEAIDDELISLALETPKKVNKAI
DDLRIPEALENIFELIGRANKYIDETTPWILAKDEDKKERLGTVLYNLIESLRFSSVLLSAFLPDTSKKINEQINASNIT
FESLNDFNGTIVGTKVQKGEALFPRIDVDKKIAELEALREAQLAANKKEEKREITPIKEEITIEDFEKIDLRVVKVLECE
PIKKAKKLLKLKVDLNGEERQVVSGIAQYYKPEDLVGKYVVLVANLKPVTLRGELSQGMILAASTDDDSLLKVVNPGELP
TGSVVR

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	SUPERFAMILY:SSF52374		-	2	348			3323494	999043	12	0	0	0	2108	0	1
2	PFAM:PF00133	IPR002300	tRNA synthetases class I (I, L, M and V)	2	134	44.8	5.3E-12	3323488	999043	720	0	0	0	2108	0	2
3	CDD:cd00814	IPR033911	MetRS_core	4	337			3323491	999043	1805	0	0	0	2108	0	3
4	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	7	21			3323483	999043	1797	0	0	0	2108	0	4
5	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	39	54			3323479	999043	1797	0	0	0	2108	0	5
6	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	87	99			3323482	999043	1797	0	0	0	2108	0	6
7	PFAM:PF09334	IPR015413	tRNA synthetases class I (M)	148	361	229.9	0	3323486	999043	1798	0	0	0	2108	0	7
8	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	223	235			3323481	999043	1797	0	0	0	2108	0	8
9	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	256	272			3323484	999043	1797	0	0	0	2108	0	9
10	CDD:cd07957	IPR041872	Anticodon_Ia_Met	345	475			3323492	999043	1807	0	0	0	2108	0	10
11	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	348	360			3323480	999043	1797	0	0	0	2108	0	11
12	SUPERFAMILY:SSF47323	IPR009080	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	350	560			3323493	999043	726	0	0	0	2108	0	12
13	PFAM:PF08264	IPR013155	Anticodon-binding domain of tRNA ligase	384	540	30.4	3.3E-7	3323487	999043	722	0	0	0	2108	0	13
14	CDD:cd02800	IPR004495	tRNA_bind_EcMetRS_like	541	647			3323490	999043	1810	0	0	0	2108	0	14
15	SUPERFAMILY:SSF50249	IPR012340	Nucleic acid-binding, OB-fold	544	644			3323495	999043	405	0	0	0	2108	0	15
16	PROSITE_PROFILES:PS50886	IPR002547	tRNA-binding domain profile.	545	647			3323489	999043	1804	0	0	0	2108	0	16
17	PFAM:PF01588	IPR002547	Putative tRNA binding domain	551	643	92.3	1.5E-26	3323485	999043	1799	0	0	0	2108	0	17

↑ Top