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AnGL28_00356 Locus tags: • Sequence Length: 250

FD_MS_7_1, AnGL28 Batch1_genome_fasta/FD_MS_7_1

5050100100150150200200250250
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AnGL28_00351 AnGL28_00352 AnGL28_00355 AnGL28_00357 AnGL28_00358 AnGL28_00360 
    [SP]_[PF08378]_[PF01396]_[TM]

    [SP]_[17:PF08378]_[200:PF01396]_[TM]

    [SP]_[17:IPR011528]_[17:IPR011528]_[200:IPR013498]_[TM]

Looking for similar signatures in the working genomes

PF08378:NERD. Nuclease-related domain

Found 45 similar signatures
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0020139-161
FD_25_22, AnGL7 AnGL7_0181617-123
AnGL7_0181939-151
FD_MS_7_1, AnGL28 AnGL28_0035617-130
AnGL28_0300686-192
FD_SO4_37_1, AnGL2 AnGL2_0213586-192
AnGL2_0303517-130
FD_YE_37_9_2, AnGL4 AnGL4_0037766-182
Syntrophomonas curvata, Scurva Scurva_0236739-161
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0080439-161
Terrisporobacter hibernicus, AnGL54 AnGL54_0015160-153
FD-25-21, AnGL21 AnGL21_0071243-156
AnGL21_0071517-143
FD-MS-7-8, AnGL9 AnGL9_0282386-193
FD-YE-37-9-3, AnGL29 AnGL29_0110266-182
Syntrophomonas erecta, GB-438 Ga0610585_0020139-161
Variovorax paradoxus, 2u118 PaGL#32_0433525-117
Exiguobacterium mexicanum, AnGL24 AnGL24_007481-64
AnGL24_0138939-139
AnGL24_02037128-210
Clostridium subterminale, CB-LS10-1 AnGL53_0190831-144
Priestia megaterium, 10L1 PaGL#57_0029469-185
Variovorax paradoxus, SPNA7 PaGL#43_0450025-117
PaGL#43_0475116-110
Geodermatophilus sp., RDM14 PaGL#36_0303415-111
Fictibacillus phosphorivorans, TY7 PaGL#38_0085240-154
PaGL#38_009426-106
PaGL#38_025483-111
PaGL#38_0414241-155
PaGL#38_0421222-137
PaGL#38_0424940-108
PaGL#38_0431641-154
PaGL#38_0446333-144
Syntrophomonas wolfei, saponavida Swsap_0190640-161
Peribacillus frigoritolerans, 30N-5 PaGL#67_0060942-156
PaGL#67_0202640-152
Micromonospora inositola, Utrum1 PaGL#61_0137714-127
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_0405960-153
Niallia taxi, AG-1 PaGL#37_0065016-126
MPOB, Sfum 639703068:Sfum_0236142-164
Sfum_0331944-140
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_00676168-279
Syntrophus aciditrophicus, SB 637858307:SYN_0000932-145
Syntrophus gentianae, DSM8423 Ga0074853_13711:Sgen_0305211-122
Ruminococcus callidus, ATCC 27760 Rcal_005519-120

PF01396:Zn_ribbon_Top1. Topoisomerase DNA binding C4 zinc finger

Found 157 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003517938.1:LOMAGDGF_01817578-614
618-658
661-695
Clostridium acetobutylicum, DSM 1731 WP_010965091.1:FHOCHPCF_01829576-612
616-654
656-692
Acetivibrio alkalicellulosi, DSM 17461 2510063940:NJMEOJLD_04112578-614
618-656
658-690
Pseudobacteroides cellulosolvens, DSM 2933 WP_036938706.1:NEIHKHHH_03706578-613
618-656
657-691
WP_050753791.1:NEIHKHHH_05033185-221
Ruminococcus albus_7, DSM 20455 WP_013499649.1:HCIAFFOI_03168579-615
619-655
659-678
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_00862577-614
618-655
657-688
Paenibacillus guangzhouensis, KCTC 33171 WP_152392461.1:KDFAKKPF_00966579-616
619-658
662-693
WP_152396543.1:KDFAKKPF_05738602-635
641-665
Clostridium acetobutylicum, ATCC 824 WP_010965091.1:OJAMHIDJ_01837576-612
616-654
656-692
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137696391.1:PROKKA_01618578-613
618-655
658-687
WP_137696772.1:PROKKA_02797179-220
Syntrophomonas erecta, DSM 16215 OINOEOOJ_01101575-612
615-653
654-686
FD_25_22, AnGL7 AnGL7_0008816-53
64-98
109-146
AnGL7_01779605-631
716-754
AnGL7_01819239-276
AnGL7_02569858-891
922-947
FD_25_27, AnGL8 AnGL8_0126021-55
62-100
102-122
AnGL8_01976598-624
708-746
FD_MS_7_1, AnGL28 AnGL28_00356200-238
FD_SO4_37_1, AnGL2 AnGL2_03035200-238
FD_YE_25_21, AnGL21 AnGL21_01037854-888
919-944
AnGL21_01881601-627
711-749
AnGL21_02726237-274
AnGL21_0310519-61
70-107
119-154
158-178
FD_YE_37_9_2, AnGL4 AnGL4_03144578-613
618-656
Syntrophus buswellii, Sbus Sbus_01200593-629
645-679
682-721
724-760
Syntrophomonas curvata, Scurva Scurva_01241575-612
615-653
654-689
Syntrophomonas erecta sporosyntropha, Sespor Sespor_02544575-612
615-653
654-686
Syntrophomonas wolfei methylbutyratica, Swm Swm_00952577-614
618-655
657-688
Terrisporobacter hibernicus, AnGL54 AnGL54_02030574-611
613-653
FD-25-21, AnGL21 AnGL21_00092858-891
922-947
AnGL21_00712239-276
AnGL21_00810605-631
716-754
AnGL21_0253216-53
64-98
109-146
Paraclostridium benzoelyticum, AnGL27 AnGL27_03144574-611
613-653
655-692
FD-YE-37-9-3, AnGL29 AnGL29_00402578-613
618-656
Methylobacterium radiotolerans, GTSA1 PaGL#34_01178601-638
Syntrophomonas erecta, GB-438 Ga0610585_01101575-612
615-653
654-686
Maridesulfovibrio salexigens, AnGL23 AnGL23_01190618-654
673-712
AnGL23_03283570-605
625-662
678-716
719-759
761-786
Exiguobacterium mexicanum, AnGL24 AnGL24_01259580-616
621-659
663-690
Clostridium subterminale, CB-LS10-1 AnGL53_01149577-611
616-654
656-691
AnGL53_01908219-251
Priestia megaterium, 10L1 PaGL#57_03348575-613
615-655
Methanospirillum lacunae, Ki8-1 MLKi8_02854588-624
Methylorubrum populi, CTY4 PaGL#39_03019602-638
Fictibacillus phosphorivorans, TY7 PaGL#38_02268575-613
616-655
Methanospirillum hungatei, GP1 MhGP1_02186588-623
Methanospirillum stamsii, Pt1 MLKi8_02891589-623
Syntrophomonas wolfei, saponavida Swsap_00157575-612
616-653
655-689
Bacillus subtilis, 30VD-1 PaGL#66_02518575-613
615-655
657-689
Peribacillus frigoritolerans, 30N-5 PaGL#67_03991575-613
615-655
657-687
Sphingomonas sp., CR2A3 PaGL#62_02051596-632
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_02833574-611
613-653
Niallia taxi, AG-1 PaGL#37_01397576-613
616-656
658-689
Methanospirillum.hungatei GP1, MhGP1 8064047360:MhGP1_00717588-623
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_111926:Mhun_01927588-623
MPOB, Sfum 639700967:Sfum_00226589-621
639-673
680-713
720-757
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_10774:Spalm_01221291-328
330-369
370-388
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_00862577-614
618-655
657-688
Syntrophomonas zehnderi, OL-4 Szehn Szehn_01514575-612
615-653
654-689
Syntrophus aciditrophicus, SB 637858307:SYN_00009217-253
637859700:SYN_01295601-637
653-687
690-730
733-762
Syntrophus gentianae, DSM8423 Ga0074853_105117:Sgen_00937593-628
645-679
682-721
725-757
Ruminococcus callidus, ATCC 27760 Rcal_00551199-232
Rcal_02567580-616
620-655
660-692
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