SMPP Home

PaGL#32_00235 Locus tags: • Sequence Length: 1271

Variovorax paradoxus, 2u118 Batch2_genome_fasta/V.paradoxus

505010010015015020020025025030030035035040040045045050050055055060060065065070070075075080080085085090090095095010001000105010501100110011501150120012001250125013001300
Show complete sequence
Click domain (colored bar) to show sequence
PaGL#32_00233 PaGL#32_05521 PaGL#32_00234 PaGL#32_05522 PaGL#32_00235 PaGL#32_05523 PaGL#32_05525 PaGL#32_05526 PaGL#32_00236 
    [PF14331]_[PF06761]_[PF06744]_[TM]

    [209:PF14331]_[525:PF06761]_[1086:PF06744]_[TM]

    [139:IPR027417]_[209:IPR025743]_[525:IPR009612]_[1086:IPR010623]_[TM]

Looking for similar signatures in the working genomes

PF14331:IcmF-related_N. IcmF-related N-terminal domain

Found 10 similar signatures
Variovorax sp., EBFNA2 PaGL#33_00268209-470
PaGL#33_00565209-470
PaGL#33_05825186-437
Variovorax paradoxus, 2u118 PaGL#32_00235209-469
PaGL#32_00553208-469
PaGL#32_00590150-338
Maridesulfovibrio salexigens, AnGL23 AnGL23_02809184-433
Variovorax paradoxus, SPNA7 PaGL#43_00230209-469
PaGL#43_00529208-469
PaGL#43_00565150-338

PF06761:IcmF-related. Intracellular multiplication and human macrophage-killing

Found 7 similar signatures
Variovorax sp., EBFNA2 PaGL#33_00268527-834
PaGL#33_00565521-832
PaGL#33_05825492-860
Variovorax paradoxus, 2u118 PaGL#32_00235525-834
PaGL#32_00553520-831
Variovorax paradoxus, SPNA7 PaGL#43_00230525-834
PaGL#43_00529520-831

PF06744:IcmF_C. Type VI secretion protein IcmF C2-like domain

Found 7 similar signatures
Variovorax sp., EBFNA2 PaGL#33_002681086-1192
PaGL#33_005651077-1182
PaGL#33_058251128-1231
Variovorax paradoxus, 2u118 PaGL#32_002351086-1192
PaGL#32_005531075-1180
Variovorax paradoxus, SPNA7 PaGL#43_002301086-1192
PaGL#43_005291075-1180
Search by locus tag: Search
↑ Top




v4.1 @copyright 2025 UCLA