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PaGL#32_00625 Locus tags: • Sequence Length: 150

Variovorax paradoxus, 2u118 Batch2_genome_fasta/V.paradoxus

5050100100150150
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PaGL#32_00621 PaGL#32_05928 PaGL#32_00623 PaGL#32_05929 PaGL#32_00624 PaGL#32_00625 PaGL#32_00626 PaGL#32_05930 PaGL#32_05931 PaGL#32_00627 PaGL#32_00628 
    [PF03946]_[PF00298]

    [8:PF03946]_[71:PF00298]

    [2:IPR036796]_[8:IPR000911]_[8:IPR020784]_[8:IPR000911]_[67:IPR036769]_[71:IPR020783]

Looking for similar signatures in the working genomes

PF03946:Ribosomal_L11_N. Ribosomal protein L11, N-terminal domain

Found 63 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003515021.1:LOMAGDGF_003238-66
Clostridium acetobutylicum, DSM 1731 WP_010966425.1:FHOCHPCF_031908-66
Acetivibrio alkalicellulosi, DSM 17461 2510059743:NJMEOJLD_000078-66
Pseudobacteroides cellulosolvens, DSM 2933 WP_036937164.1:NEIHKHHH_044668-66
Ruminococcus albus_7, DSM 20455 WP_013499179.1:HCIAFFOI_026548-66
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_112506:GJLLLGJL_024618-66
Paenibacillus guangzhouensis, KCTC 33171 WP_018759725.1:KDFAKKPF_044258-66
Clostridium acetobutylicum, ATCC 824 WP_010966425.1:OJAMHIDJ_031998-66
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697353.1:PROKKA_034158-67
Syntrophomonas erecta, DSM 16215 OINOEOOJ_023738-66
FD_25_22, AnGL7 AnGL7_002658-67
FD_25_27, AnGL8 AnGL8_029828-67
FD_MS_7_1, AnGL28 AnGL28_028808-66
FD_SO4_25_1_F22, AnGL30 AnGL30_008468-66
FD_SO4_37_1, AnGL2 AnGL2_020098-66
FD_YE_25_21, AnGL21 AnGL21_029838-67
FD_YE_37_3, AnGL26 AnGL26_029588-66
FD_YE_37_8_2, AnGL3 AnGL3_011468-66
FD_YE_37_9_2, AnGL4 AnGL4_023518-66
Syntrophus buswellii, Sbus Sbus_004628-66
Syntrophomonas curvata, Scurva Scurva_028208-66
Syntrophomonas erecta sporosyntropha, Sespor Sespor_011448-66
Syntrophomonas wolfei methylbutyratica, Swm Swm_028448-66
Terrisporobacter hibernicus, AnGL54 AnGL54_032718-66
FD-25-21, AnGL21 AnGL21_023788-67
Sunxiuqinia elliptica, AnGL22 AnGL22_029558-66
Paraclostridium benzoelyticum, AnGL27 AnGL27_007388-66
FD-MS-7-8, AnGL9 AnGL9_030688-66
FD-YE-37-9-3, AnGL29 AnGL29_030768-66
Methylobacterium radiotolerans, GTSA1 PaGL#34_041738-67
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_017868-66
Syntrophomonas erecta, GB-438 Ga0610585_023738-66
Variovorax sp., EBFNA2 PaGL#33_006188-67
Variovorax paradoxus, 2u118 PaGL#32_006258-67
Dietzia cinnamea, 55 PaGL#56_0241311-69
Maridesulfovibrio salexigens, AnGL23 AnGL23_020528-66
Exiguobacterium mexicanum, AnGL24 AnGL24_029868-66
Clostridium subterminale, CB-LS10-1 AnGL53_033628-66
Priestia megaterium, 10L1 PaGL#57_021408-66
Variovorax paradoxus, SPNA7 PaGL#43_006008-67
Methanospirillum lacunae, Ki8-1 MLKi8_025074-62
Geodermatophilus sp., RDM14 PaGL#36_0380210-68
Methylorubrum populi, CTY4 PaGL#39_038738-67
Fictibacillus phosphorivorans, TY7 PaGL#38_005088-66
Methanospirillum hungatei, GP1 MhGP1_024474-62
Methanospirillum stamsii, Pt1 MLKi8_032154-62
Syntrophomonas wolfei, saponavida Swsap_009778-66
Bacillus subtilis, 30VD-1 PaGL#66_000668-66
Peribacillus frigoritolerans, 30N-5 PaGL#67_001498-66
Micromonospora inositola, Utrum1 PaGL#61_0643011-68
Sphingomonas sp., CR2A3 PaGL#62_013828-67
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_001078-66
Niallia taxi, AG-1 PaGL#37_001268-66
Methanospirillum.hungatei GP1, MhGP1 8064047090:MhGP1_004564-62
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_111549:Mhun_015504-62
MPOB, Sfum 639702312:Sfum_015948-66
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_027378-66
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_112506:Swol_024618-66
Syntrophomonas zehnderi, OL-4 Szehn Szehn_010908-66
Syntrophus aciditrophicus, SB 637858597:SYN_002728-66
Syntrophus gentianae, DSM8423 Ga0074853_10285:Sgen_002968-66
Mucilaginibacter gossypii, cycad 4 PaGL#42_000698-66
Ruminococcus callidus, ATCC 27760 Rcal_020338-66

PF00298:Ribosomal_L11. Ribosomal protein L11, RNA binding domain

Found 63 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003515021.1:LOMAGDGF_0032370-139
Clostridium acetobutylicum, DSM 1731 WP_010966425.1:FHOCHPCF_0319070-139
Acetivibrio alkalicellulosi, DSM 17461 2510059743:NJMEOJLD_0000770-139
Pseudobacteroides cellulosolvens, DSM 2933 WP_036937164.1:NEIHKHHH_0446670-139
Ruminococcus albus_7, DSM 20455 WP_013499179.1:HCIAFFOI_0265470-139
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_112506:GJLLLGJL_0246170-139
Paenibacillus guangzhouensis, KCTC 33171 WP_018759725.1:KDFAKKPF_0442570-139
Clostridium acetobutylicum, ATCC 824 WP_010966425.1:OJAMHIDJ_0319970-139
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697353.1:PROKKA_0341571-140
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0237370-139
FD_25_22, AnGL7 AnGL7_0026571-140
FD_25_27, AnGL8 AnGL8_0298271-140
FD_MS_7_1, AnGL28 AnGL28_0288070-139
FD_SO4_25_1_F22, AnGL30 AnGL30_0084670-139
FD_SO4_37_1, AnGL2 AnGL2_0200970-139
FD_YE_25_21, AnGL21 AnGL21_0298371-140
FD_YE_37_3, AnGL26 AnGL26_0295870-139
FD_YE_37_8_2, AnGL3 AnGL3_0114670-139
FD_YE_37_9_2, AnGL4 AnGL4_0235170-139
Syntrophus buswellii, Sbus Sbus_0046270-139
Syntrophomonas curvata, Scurva Scurva_0282070-139
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0114470-139
Syntrophomonas wolfei methylbutyratica, Swm Swm_0284470-139
Terrisporobacter hibernicus, AnGL54 AnGL54_0327170-139
FD-25-21, AnGL21 AnGL21_0237871-140
Sunxiuqinia elliptica, AnGL22 AnGL22_0295570-139
Paraclostridium benzoelyticum, AnGL27 AnGL27_0073870-139
FD-MS-7-8, AnGL9 AnGL9_0306870-139
FD-YE-37-9-3, AnGL29 AnGL29_0307670-139
Methylobacterium radiotolerans, GTSA1 PaGL#34_0417371-147
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0178670-139
Syntrophomonas erecta, GB-438 Ga0610585_0237370-139
Variovorax sp., EBFNA2 PaGL#33_0061871-140
Variovorax paradoxus, 2u118 PaGL#32_0062571-140
Dietzia cinnamea, 55 PaGL#56_0241373-142
Maridesulfovibrio salexigens, AnGL23 AnGL23_0205270-139
Exiguobacterium mexicanum, AnGL24 AnGL24_0298670-139
Clostridium subterminale, CB-LS10-1 AnGL53_0336270-139
Priestia megaterium, 10L1 PaGL#57_0214070-139
Variovorax paradoxus, SPNA7 PaGL#43_0060071-140
Methanospirillum lacunae, Ki8-1 MLKi8_0250767-135
Geodermatophilus sp., RDM14 PaGL#36_0380272-141
Methylorubrum populi, CTY4 PaGL#39_0387371-147
Fictibacillus phosphorivorans, TY7 PaGL#38_0050870-139
Methanospirillum hungatei, GP1 MhGP1_0244767-135
Methanospirillum stamsii, Pt1 MLKi8_0321567-135
Syntrophomonas wolfei, saponavida Swsap_0097770-139
Bacillus subtilis, 30VD-1 PaGL#66_0006670-139
Peribacillus frigoritolerans, 30N-5 PaGL#67_0014970-139
Micromonospora inositola, Utrum1 PaGL#61_0643072-141
Sphingomonas sp., CR2A3 PaGL#62_0138271-140
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_0010770-139
Niallia taxi, AG-1 PaGL#37_0012670-139
Methanospirillum.hungatei GP1, MhGP1 8064047090:MhGP1_0045667-135
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_111549:Mhun_0155067-135
MPOB, Sfum 639702312:Sfum_0159470-139
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_0273770-139
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_112506:Swol_0246170-139
Syntrophomonas zehnderi, OL-4 Szehn Szehn_0109070-139
Syntrophus aciditrophicus, SB 637858597:SYN_0027270-139
Syntrophus gentianae, DSM8423 Ga0074853_10285:Sgen_0029670-139
Mucilaginibacter gossypii, cycad 4 PaGL#42_0006970-139
Ruminococcus callidus, ATCC 27760 Rcal_0203370-139
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