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PaGL#32_01648 Locus tags: • Sequence Length: 889

Variovorax paradoxus, 2u118 Batch2_genome_fasta/V.paradoxus

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PaGL#32_01643 PaGL#32_01645 PaGL#32_01646 PaGL#32_01647 PaGL#32_01648 PaGL#32_01650 PaGL#32_01652 
    [PF13298]_[PF01068]_[PF04679]

    [37:PF13298]_[242:PF01068]_[431:PF04679]

    [37:IPR014144]_[242:IPR012310]_[319:IPR012310]_[413:IPR012340]_[431:IPR012309]_[573:IPR033651]

Looking for similar signatures in the working genomes

PF13298:LigD_N. DNA polymerase Ligase (LigD)

Found 13 similar signatures
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0304833-148
Variovorax sp., EBFNA2 PaGL#33_0646137-141
PaGL#33_0251743-147
Variovorax paradoxus, 2u118 PaGL#32_0555641-145
PaGL#32_0164837-142
Dietzia cinnamea, 55 PaGL#56_02587391-491
Variovorax paradoxus, SPNA7 PaGL#43_0163637-142
Geodermatophilus sp., RDM14 PaGL#36_0270244-149
Syntrophomonas wolfei, saponavida Swsap_0280635-140
Micromonospora inositola, Utrum1 PaGL#61_0143869-168
PaGL#61_0332410-101
Sphingomonas sp., CR2A3 PaGL#62_0283537-143
Mucilaginibacter gossypii, cycad 4 PaGL#42_0259433-148

PF01068:DNA_ligase_A_M. ATP dependent DNA ligase domain

Found 62 similar signatures
Acetivibrio alkalicellulosi, DSM 17461 2510063583:NJMEOJLD_0376150-222
Pseudobacteroides cellulosolvens, DSM 2933 WP_050753423.1:NEIHKHHH_0275150-222
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_111180:GJLLLGJL_0115519-197
Paenibacillus guangzhouensis, KCTC 33171 WP_152393612.1:KDFAKKPF_0229326-208
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697610.1:PROKKA_0067217-198
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0045821-197
FD_25_22, AnGL7 AnGL7_0101073-197
FD_25_27, AnGL8 AnGL8_0306040-195
Syntrophomonas curvata, Scurva Scurva_009476-183
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0054521-197
Syntrophomonas wolfei methylbutyratica, Swm Swm_0131619-197
Terrisporobacter hibernicus, AnGL54 AnGL54_00207146-336
FD-25-21, AnGL21 AnGL21_0154175-197
Methylobacterium radiotolerans, GTSA1 PaGL#34_04017213-420
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_00668229-411
PaGL#35_03048253-433
Syntrophomonas erecta, GB-438 Ga0610585_0045821-197
Variovorax sp., EBFNA2 PaGL#33_06461237-407
PaGL#33_02517232-415
PaGL#33_0315585-200
PaGL#33_0349118-194
PaGL#33_05540235-418
Variovorax paradoxus, 2u118 PaGL#32_05556248-418
PaGL#32_01648242-411
PaGL#32_04832235-418
Dietzia cinnamea, 55 PaGL#56_02587571-751
Variovorax paradoxus, SPNA7 PaGL#43_01636242-411
PaGL#43_05011236-418
Methanospirillum lacunae, Ki8-1 MLKi8_01936220-410
Geodermatophilus sp., RDM14 PaGL#36_0022947-222
PaGL#36_02539186-381
PaGL#36_02702178-373
PaGL#36_0285010-200
Methylorubrum populi, CTY4 PaGL#39_02944219-426
Fictibacillus phosphorivorans, TY7 PaGL#38_0002517-192
PaGL#38_0019935-109
PaGL#38_0198519-211
Methanospirillum hungatei, GP1 MhGP1_01324223-413
Methanospirillum stamsii, Pt1 MLKi8_01607223-413
Syntrophomonas wolfei, saponavida Swsap_02806213-384
Bacillus subtilis, 30VD-1 PaGL#66_0279815-208
Peribacillus frigoritolerans, 30N-5 PaGL#67_0270114-205
Micromonospora inositola, Utrum1 PaGL#61_0067411-184
PaGL#61_01438211-368
PaGL#61_0193110-205
PaGL#61_021457-194
PaGL#61_0321721-210
PaGL#61_0405020-192
PaGL#61_05899185-395
Sphingomonas sp., CR2A3 PaGL#62_027618-182
PaGL#62_02835228-394
PaGL#62_02940210-403
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_04115146-336
Niallia taxi, AG-1 PaGL#37_0576524-198
PaGL#37_0236817-193
Methanospirillum.hungatei GP1, MhGP1 8064048240:MhGP1_01579223-413
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_11444:Mhun_00442223-413
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_10390:Spalm_0061520-198
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_111180:Swol_0115519-197
Syntrophomonas zehnderi, OL-4 Szehn Szehn_026602-201
Mucilaginibacter gossypii, cycad 4 PaGL#42_02594265-434
PaGL#42_04287229-411

PF04679:DNA_ligase_A_C. ATP dependent DNA ligase C terminal region

Found 44 similar signatures
Acetivibrio alkalicellulosi, DSM 17461 2510063583:NJMEOJLD_03761241-360
Pseudobacteroides cellulosolvens, DSM 2933 WP_050753423.1:NEIHKHHH_02751241-360
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_111180:GJLLLGJL_01155211-298
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697610.1:PROKKA_00672215-308
Syntrophomonas erecta, DSM 16215 OINOEOOJ_00458211-302
Syntrophomonas curvata, Scurva Scurva_00947198-288
Syntrophomonas erecta sporosyntropha, Sespor Sespor_00545211-302
Syntrophomonas wolfei methylbutyratica, Swm Swm_01316211-298
Methylobacterium radiotolerans, GTSA1 PaGL#34_04017440-539
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_00668431-521
PaGL#35_03048452-555
Syntrophomonas erecta, GB-438 Ga0610585_00458211-302
Variovorax sp., EBFNA2 PaGL#33_06461426-527
PaGL#33_02517435-533
PaGL#33_05540438-534
Variovorax paradoxus, 2u118 PaGL#32_05556437-538
PaGL#32_01648431-523
PaGL#32_04832438-534
Dietzia cinnamea, 55 PaGL#56_02587769-865
Variovorax paradoxus, SPNA7 PaGL#43_01636431-523
PaGL#43_05011438-534
Methanospirillum lacunae, Ki8-1 MLKi8_01936429-520
Geodermatophilus sp., RDM14 PaGL#36_02539399-492
PaGL#36_02702391-485
PaGL#36_02850219-333
Methylorubrum populi, CTY4 PaGL#39_02944446-544
Methanospirillum hungatei, GP1 MhGP1_01324432-523
Methanospirillum stamsii, Pt1 MLKi8_01607432-523
Syntrophomonas wolfei, saponavida Swsap_02806402-497
Micromonospora inositola, Utrum1 PaGL#61_00674200-295
PaGL#61_01931222-333
PaGL#61_04050211-308
PaGL#61_05899413-506
Sphingomonas sp., CR2A3 PaGL#62_02761199-300
PaGL#62_02835412-505
PaGL#62_02940423-514
Niallia taxi, AG-1 PaGL#37_02368208-297
Methanospirillum.hungatei GP1, MhGP1 8064048240:MhGP1_01579432-523
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_11444:Mhun_00442432-523
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_10390:Spalm_00615212-301
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_111180:Swol_01155211-298
Syntrophomonas zehnderi, OL-4 Szehn Szehn_02660215-304
Mucilaginibacter gossypii, cycad 4 PaGL#42_02594452-557
PaGL#42_04287431-521
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