SMPP Home

PaGL#43_01353 Locus tags: • Sequence Length: 2865

Variovorax paradoxus, SPNA7 Batch3_genome_fasta/V.paradoxus.SPNA7

2002004004006006008008001000100012001200140014001600160018001800200020002200220024002400260026002800280030003000
Show complete sequence
Click domain (colored bar) to show sequence
PaGL#43_01353 PaGL#43_01355 
    [PF10091]_[PF06165]_[PF06165]_[PF17167]_[TM]

    [1194:PF10091]_[1460:PF06165]_[1965:PF06165]_[2235:PF17167]_[TM]

    [1194:IPR019282]_[1399:IPR037820]_[1434:IPR009342]_[1457:IPR011013]_[1460:IPR010383]_[1942:IPR009342]_[1944:IPR011013]_[1945:IPR037824]_[1965:IPR010383]_[2215:IPR008928]_[2235:IPR033432]_[TM]

Looking for similar signatures in the working genomes

PF10091:Glycoamylase. Putative glucoamylase

Found 30 similar signatures
Acetivibrio thermocellus, DSM 1313 LOMAGDGF_010721384-1596
Clostridium acetobutylicum, DSM 1731 WP_010963929.1:FHOCHPCF_006541334-1549
Acetivibrio alkalicellulosi, DSM 17461 2510062143:NJMEOJLD_023441371-1583
Pseudobacteroides cellulosolvens, DSM 2933 WP_036944861.1:NEIHKHHH_045051429-1641
Clostridium acetobutylicum, ATCC 824 WP_010963929.1:OJAMHIDJ_006551334-1549
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137698265.1:PROKKA_011811317-1530
FD_SO4_25_1_F22, AnGL30 AnGL30_00694225-466
FD_YE_37_3, AnGL26 AnGL26_03064213-433
AnGL26_03065482-696
AnGL26_03068288-515
FD_YE_37_8_2, AnGL3 AnGL3_01347219-462
Sunxiuqinia elliptica, AnGL22 AnGL22_03060213-433
AnGL22_03061482-696
AnGL22_03064288-515
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_06477215-431
Variovorax sp., EBFNA2 PaGL#33_047771194-1394
Variovorax paradoxus, 2u118 PaGL#32_06117195-410
PaGL#32_013541194-1391
Clostridium subterminale, CB-LS10-1 AnGL53_026161331-1545
Variovorax paradoxus, SPNA7 PaGL#43_06055195-410
PaGL#43_013531194-1391
Methanospirillum lacunae, Ki8-1 MLKi8_020641383-1582
Fictibacillus phosphorivorans, TY7 PaGL#38_01402260-432
PaGL#38_04290169-385
Methanospirillum stamsii, Pt1 MLKi8_000501384-1582
Micromonospora inositola, Utrum1 PaGL#61_04892286-481
Sphingomonas sp., CR2A3 PaGL#62_03243212-459
Syntrophus gentianae, DSM8423 Sgen_017781360-1560
Ga0074853_10169:Sgen_00068507-738
Mucilaginibacter gossypii, cycad 4 PaGL#42_05995215-431

PF06165:Glyco_transf_36. Glycosyltransferase family 36

Found 47 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003514923.1:LOMAGDGF_00560198-407
LOMAGDGF_010721649-1897
2151-2388
WP_003518177.1:LOMAGDGF_0201720-263
Clostridium acetobutylicum, DSM 1731 WP_010963929.1:FHOCHPCF_006541598-1844
2099-2340
Acetivibrio alkalicellulosi, DSM 17461 2510061381:NJMEOJLD_0160520-263
2510061382:NJMEOJLD_01606167-411
2510062143:NJMEOJLD_023441635-1883
2137-2375
Pseudobacteroides cellulosolvens, DSM 2933 WP_036940850.1:NEIHKHHH_0091320-263
WP_036946853.1:NEIHKHHH_0202320-263
WP_036944861.1:NEIHKHHH_045051694-1943
2187-2425
Ruminococcus albus_7, DSM 20455 WP_013496936.1:HCIAFFOI_0019320-263
WP_013499018.1:HCIAFFOI_0247120-274
Clostridium acetobutylicum, ATCC 824 WP_010963929.1:OJAMHIDJ_006551598-1844
2099-2340
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137698265.1:PROKKA_011811580-1830
2140-2379
WP_137696557.1:PROKKA_0143120-263
WP_137696435.1:PROKKA_0156920-263
WP_137698651.1:PROKKA_0368420-283
FD_25_27, AnGL8 AnGL8_0121620-272
FD_MS_7_1, AnGL28 AnGL28_0157723-273
FD_SO4_37_1, AnGL2 AnGL2_0070623-273
FD_YE_25_21, AnGL21 AnGL21_0052320-267
AnGL21_0197120-266
FD_YE_37_8_2, AnGL3 AnGL3_0301320-263
FD_YE_37_9_2, AnGL4 AnGL4_0096320-263
FD-YE-37-9-3, AnGL29 AnGL29_0168820-263
Variovorax sp., EBFNA2 PaGL#33_047771460-1710
1965-2210
Variovorax paradoxus, 2u118 PaGL#32_013541460-1710
1965-2206
Clostridium subterminale, CB-LS10-1 AnGL53_026161594-1839
2105-2345
Variovorax paradoxus, SPNA7 PaGL#43_013531460-1710
1965-2206
Methanospirillum lacunae, Ki8-1 MLKi8_020641645-1896
2152-2392
Methanospirillum stamsii, Pt1 MLKi8_000501646-1897
2153-2393
Syntrophus gentianae, DSM8423 Sgen_017781623-1874
2130-2370
Ruminococcus callidus, ATCC 27760 Rcal_0015720-263
Rcal_0275720-274

PF06165:Glyco_transf_36. Glycosyltransferase family 36

Found 47 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003514923.1:LOMAGDGF_00560198-407
LOMAGDGF_010721649-1897
2151-2388
WP_003518177.1:LOMAGDGF_0201720-263
Clostridium acetobutylicum, DSM 1731 WP_010963929.1:FHOCHPCF_006541598-1844
2099-2340
Acetivibrio alkalicellulosi, DSM 17461 2510061381:NJMEOJLD_0160520-263
2510061382:NJMEOJLD_01606167-411
2510062143:NJMEOJLD_023441635-1883
2137-2375
Pseudobacteroides cellulosolvens, DSM 2933 WP_036940850.1:NEIHKHHH_0091320-263
WP_036946853.1:NEIHKHHH_0202320-263
WP_036944861.1:NEIHKHHH_045051694-1943
2187-2425
Ruminococcus albus_7, DSM 20455 WP_013496936.1:HCIAFFOI_0019320-263
WP_013499018.1:HCIAFFOI_0247120-274
Clostridium acetobutylicum, ATCC 824 WP_010963929.1:OJAMHIDJ_006551598-1844
2099-2340
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137698265.1:PROKKA_011811580-1830
2140-2379
WP_137696557.1:PROKKA_0143120-263
WP_137696435.1:PROKKA_0156920-263
WP_137698651.1:PROKKA_0368420-283
FD_25_27, AnGL8 AnGL8_0121620-272
FD_MS_7_1, AnGL28 AnGL28_0157723-273
FD_SO4_37_1, AnGL2 AnGL2_0070623-273
FD_YE_25_21, AnGL21 AnGL21_0052320-267
AnGL21_0197120-266
FD_YE_37_8_2, AnGL3 AnGL3_0301320-263
FD_YE_37_9_2, AnGL4 AnGL4_0096320-263
FD-YE-37-9-3, AnGL29 AnGL29_0168820-263
Variovorax sp., EBFNA2 PaGL#33_047771460-1710
1965-2210
Variovorax paradoxus, 2u118 PaGL#32_013541460-1710
1965-2206
Clostridium subterminale, CB-LS10-1 AnGL53_026161594-1839
2105-2345
Variovorax paradoxus, SPNA7 PaGL#43_013531460-1710
1965-2206
Methanospirillum lacunae, Ki8-1 MLKi8_020641645-1896
2152-2392
Methanospirillum stamsii, Pt1 MLKi8_000501646-1897
2153-2393
Syntrophus gentianae, DSM8423 Sgen_017781623-1874
2130-2370
Ruminococcus callidus, ATCC 27760 Rcal_0015720-263
Rcal_0275720-274

PF17167:Glyco_hydro_36. Glycosyl hydrolase 36 superfamily, catalytic domain

Found 43 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003514923.1:LOMAGDGF_00560455-828
LOMAGDGF_010722418-2845
WP_003518177.1:LOMAGDGF_02017306-737
Clostridium acetobutylicum, DSM 1731 WP_010963929.1:FHOCHPCF_006542370-2797
Acetivibrio alkalicellulosi, DSM 17461 2510061381:NJMEOJLD_01605306-737
2510061382:NJMEOJLD_01606459-902
2510062143:NJMEOJLD_023442405-2832
Pseudobacteroides cellulosolvens, DSM 2933 WP_036940850.1:NEIHKHHH_00913293-711
WP_036946853.1:NEIHKHHH_02023306-737
WP_036944861.1:NEIHKHHH_045052455-2882
Ruminococcus albus_7, DSM 20455 WP_013496936.1:HCIAFFOI_00193308-753
WP_013499018.1:HCIAFFOI_02471303-730
Paenibacillus guangzhouensis, KCTC 33171 WP_152396185.1:KDFAKKPF_05328693-977
Clostridium acetobutylicum, ATCC 824 WP_010963929.1:OJAMHIDJ_006552370-2797
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137698265.1:PROKKA_011812409-2835
WP_137696557.1:PROKKA_01431293-729
WP_137696435.1:PROKKA_01569307-737
WP_137698651.1:PROKKA_03684318-740
FD_25_27, AnGL8 AnGL8_01216306-730
FD_MS_7_1, AnGL28 AnGL28_01577311-733
FD_SO4_37_1, AnGL2 AnGL2_00706311-733
FD_YE_25_21, AnGL21 AnGL21_00523295-727
AnGL21_01971306-730
FD_YE_37_3, AnGL26 AnGL26_0342044-376
AnGL26_0342371-320
FD_YE_37_8_2, AnGL3 AnGL3_03013306-737
FD_YE_37_9_2, AnGL4 AnGL4_00963306-737
AnGL4_01924329-766
Sunxiuqinia elliptica, AnGL22 AnGL22_0341644-376
AnGL22_0341971-320
FD-YE-37-9-3, AnGL29 AnGL29_01688306-737
AnGL29_02649329-766
Variovorax sp., EBFNA2 PaGL#33_047772239-2665
Variovorax paradoxus, 2u118 PaGL#32_013542235-2662
Exiguobacterium mexicanum, AnGL24 AnGL24_00470595-926
Clostridium subterminale, CB-LS10-1 AnGL53_026162375-2802
Variovorax paradoxus, SPNA7 PaGL#43_013532235-2662
Methanospirillum lacunae, Ki8-1 MLKi8_020642422-2849
Fictibacillus phosphorivorans, TY7 PaGL#38_01409689-972
Methanospirillum stamsii, Pt1 MLKi8_000502423-2850
Syntrophus gentianae, DSM8423 Sgen_017782400-2827
Ruminococcus callidus, ATCC 27760 Rcal_00157307-742
Rcal_02757303-724
Search by locus tag: Search
↑ Top




v4.1 @copyright 2025 UCLA