Cellulosome Database Gene Detail

PaGL#43_01625 Locus tags: • Sequence Length: 833

Variovorax paradoxus, SPNA7 Batch3_genome_fasta/V.paradoxus.SPNA7

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    [PF03104]_[PF00136]

    [80:PF03104]_[387:PF00136]

    [6:IPR012337]_[80:IPR006133]_[151:IPR006172]_[387:IPR006134]_[393:IPR043502]_[423:IPR006172]_[497:IPR006172]_[549:IPR006172]

Looking for similar signatures in the working genomes

PF03104:DNA_pol_B_exo1. DNA polymerase family B, exonuclease domain

Found 11 similar signatures

FD_25_22, AnGL7	AnGL7_01864	87-310
FD_25_27, AnGL8	AnGL8_00068	189-294
FD_YE_25_21, AnGL21	AnGL21_01807	70-296
FD-25-21, AnGL21	AnGL21_00644	87-310
Variovorax sp., EBFNA2	PaGL#33_03972	118-343
Variovorax paradoxus, 2u118	PaGL#32_05366	80-305
Variovorax paradoxus, SPNA7	PaGL#43_01625	80-305
Methanospirillum lacunae, Ki8-1	MLKi8_02928	57-334
Methanospirillum hungatei, GP1	MhGP1_02902	62-326
Methanospirillum stamsii, Pt1	MLKi8_03498	59-327
Methanospirillum.hungatei.JF-1, MhunJF1	Ga0065338_112085:Mhun_02084	50-318

PF00136:DNA_pol_B. DNA polymerase family B

Found 17 similar signatures

FD_25_22, AnGL7	AnGL7_01864	394-784
FD_25_27, AnGL8	AnGL8_00068	373-741
FD_YE_25_21, AnGL21	AnGL21_01807	377-753
FD-25-21, AnGL21	AnGL21_00644	394-783
Variovorax sp., EBFNA2	PaGL#33_03972	424-787
Variovorax paradoxus, 2u118	PaGL#32_05366	389-751
Variovorax paradoxus, SPNA7	PaGL#43_01625	387-749
Methanospirillum lacunae, Ki8-1	MLKi8_02928	418-713
	MLKi8_03152	314-366
Methanospirillum hungatei, GP1	MhGP1_02677	314-368
	MhGP1_02902	400-705
Methanospirillum stamsii, Pt1	MLKi8_03379	314-367
	MLKi8_03498	401-763
Methanospirillum.hungatei GP1, MhGP1	8064046853:MhGP1_00226	314-368
	8064049940:MhGP1_03244	1-187
Methanospirillum.hungatei.JF-1, MhunJF1	Ga0065338_111740:Mhun_01741	314-366
	Ga0065338_112085:Mhun_02084	392-698

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