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Swsap_01383 Locus tags: • Sequence Length: 486

Syntrophomonas wolfei, saponavida Batch4_genome_fasta/bc2031

5050100100150150200200250250300300350350400400450450500500
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Swsap_01378 Swsap_01379 Swsap_01380 Swsap_01381 Swsap_01382 Swsap_01383 Swsap_01384 Swsap_01385 Swsap_01386 Swsap_01387 Swsap_01388 
    [PF00309]_[PF04963]_[PF04552]

    [8:PF00309]_[100:PF04963]_[303:PF04552]

    [8:IPR000394]_[100:IPR007046]_[173:IPR000394]_[303:IPR007634]_[362:IPR000394]_[378:IPR000394]_[436:IPR000394]

Looking for similar signatures in the working genomes

PF00309:Sigma54_AID. Sigma-54 factor, Activator interacting domain (AID)

Found 54 similar signatures
Clostridium acetobutylicum, DSM 1731 FHOCHPCF_007536-50
Acetivibrio alkalicellulosi, DSM 17461 2510063712:NJMEOJLD_038906-51
Pseudobacteroides cellulosolvens, DSM 2933 WP_036939115.1:NEIHKHHH_033667-51
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_11289:GJLLLGJL_002797-51
Paenibacillus guangzhouensis, KCTC 33171 WP_152395589.1:KDFAKKPF_046215-50
Clostridium acetobutylicum, ATCC 824 OJAMHIDJ_007556-50
Syntrophomonas erecta, DSM 16215 OINOEOOJ_019968-51
FD_25_22, AnGL7 AnGL7_030024-48
FD_25_27, AnGL8 AnGL8_028293-49
FD_MS_7_1, AnGL28 AnGL28_010631-38
AnGL28_0245011-52
FD_SO4_25_1_F22, AnGL30 AnGL30_008908-53
FD_SO4_37_1, AnGL2 AnGL2_001931-38
AnGL2_0157911-52
FD_YE_25_21, AnGL21 AnGL21_003253-49
FD_YE_37_3, AnGL26 AnGL26_020784-50
FD_YE_37_8_2, AnGL3 AnGL3_018062-47
Syntrophus buswellii, Sbus Sbus_013565-50
Syntrophomonas curvata, Scurva Scurva_003338-51
Syntrophomonas erecta sporosyntropha, Sespor Sespor_015768-51
Syntrophomonas wolfei methylbutyratica, Swm Swm_002527-51
Terrisporobacter hibernicus, AnGL54 AnGL54_039286-51
FD-25-21, AnGL21 AnGL21_032244-48
Sunxiuqinia elliptica, AnGL22 AnGL22_020754-50
Paraclostridium benzoelyticum, AnGL27 AnGL27_010065-51
FD-MS-7-8, AnGL9 AnGL9_013061-38
Methylobacterium radiotolerans, GTSA1 PaGL#34_026805-50
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_030162-47
Syntrophomonas erecta, GB-438 Ga0610585_019968-51
Variovorax sp., EBFNA2 PaGL#33_005114-48
PaGL#33_025376-51
Variovorax paradoxus, 2u118 PaGL#32_005014-48
PaGL#32_019957-51
Maridesulfovibrio salexigens, AnGL23 AnGL23_009525-51
Clostridium subterminale, CB-LS10-1 AnGL53_025616-51
Priestia megaterium, 10L1 PaGL#57_024954-48
PaGL#57_065257-51
Variovorax paradoxus, SPNA7 PaGL#43_004784-48
PaGL#43_021057-51
Methylorubrum populi, CTY4 PaGL#39_022035-50
Fictibacillus phosphorivorans, TY7 PaGL#38_040134-49
Syntrophomonas wolfei, saponavida Swsap_013838-51
Bacillus subtilis, 30VD-1 PaGL#66_008793-48
Peribacillus frigoritolerans, 30N-5 PaGL#67_005938-52
PaGL#67_050726-51
Sphingomonas sp., CR2A3 PaGL#62_029295-50
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_007576-51
MPOB, Sfum 639702836:Sfum_021306-52
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_105123:Spalm_010008-51
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_11289:Swol_002797-51
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_14222:Szehn_023678-51
Syntrophus aciditrophicus, SB 637859540:SYN_011405-50
Syntrophus gentianae, DSM8423 Ga0074853_10891:Sgen_013985-50
Mucilaginibacter gossypii, cycad 4 PaGL#42_012382-47

PF04963:Sigma54_CBD. Sigma-54 factor, core binding domain

Found 55 similar signatures
Clostridium acetobutylicum, DSM 1731 FHOCHPCF_0075398-285
Acetivibrio alkalicellulosi, DSM 17461 2510063712:NJMEOJLD_0389093-275
Pseudobacteroides cellulosolvens, DSM 2933 WP_036939115.1:NEIHKHHH_0336685-272
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_11289:GJLLLGJL_0027996-285
Paenibacillus guangzhouensis, KCTC 33171 WP_152395589.1:KDFAKKPF_0462170-255
Clostridium acetobutylicum, ATCC 824 OJAMHIDJ_0075598-285
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0199697-286
FD_25_22, AnGL7 AnGL7_03002117-307
FD_25_27, AnGL8 AnGL8_02829123-311
FD_MS_7_1, AnGL28 AnGL28_0106399-285
AnGL28_02450121-304
FD_SO4_25_1_F22, AnGL30 AnGL30_00890114-308
FD_SO4_37_1, AnGL2 AnGL2_0019399-285
AnGL2_01579121-304
FD_YE_25_21, AnGL21 AnGL21_00325132-320
FD_YE_37_3, AnGL26 AnGL26_02078105-298
FD_YE_37_8_2, AnGL3 AnGL3_01806108-302
Syntrophus buswellii, Sbus Sbus_01356122-309
Syntrophomonas curvata, Scurva Scurva_0033394-283
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0157697-286
Syntrophomonas wolfei methylbutyratica, Swm Swm_0025296-285
Terrisporobacter hibernicus, AnGL54 AnGL54_0392883-271
FD-25-21, AnGL21 AnGL21_03224117-307
Sunxiuqinia elliptica, AnGL22 AnGL22_02075105-298
Paraclostridium benzoelyticum, AnGL27 AnGL27_0100683-274
FD-MS-7-8, AnGL9 AnGL9_0130699-285
Methylobacterium radiotolerans, GTSA1 PaGL#34_02680146-334
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_03016117-309
Syntrophomonas erecta, GB-438 Ga0610585_0199697-286
Variovorax sp., EBFNA2 PaGL#33_00511150-358
PaGL#33_02537106-297
Variovorax paradoxus, 2u118 PaGL#32_00501150-358
PaGL#32_01995100-292
Maridesulfovibrio salexigens, AnGL23 AnGL23_00952108-297
Exiguobacterium mexicanum, AnGL24 AnGL24_0215859-216
Clostridium subterminale, CB-LS10-1 AnGL53_0256199-287
Priestia megaterium, 10L1 PaGL#57_0249573-259
PaGL#57_0652585-271
Variovorax paradoxus, SPNA7 PaGL#43_00478150-358
PaGL#43_02105113-305
Methylorubrum populi, CTY4 PaGL#39_02203142-330
Fictibacillus phosphorivorans, TY7 PaGL#38_0401379-267
Syntrophomonas wolfei, saponavida Swsap_01383100-288
Bacillus subtilis, 30VD-1 PaGL#66_0087976-261
Peribacillus frigoritolerans, 30N-5 PaGL#67_0059383-269
PaGL#67_0507291-278
Sphingomonas sp., CR2A3 PaGL#62_02929135-320
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_0075783-271
MPOB, Sfum 639702836:Sfum_02130122-309
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_105123:Spalm_0100096-285
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_11289:Swol_0027996-285
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_14222:Szehn_0236797-286
Syntrophus aciditrophicus, SB 637859540:SYN_01140121-309
Syntrophus gentianae, DSM8423 Ga0074853_10891:Sgen_01398123-310
Mucilaginibacter gossypii, cycad 4 PaGL#42_01238117-309

PF04552:Sigma54_DBD. Sigma-54, DNA binding domain

Found 55 similar signatures
Clostridium acetobutylicum, DSM 1731 FHOCHPCF_00753298-463
Acetivibrio alkalicellulosi, DSM 17461 2510063712:NJMEOJLD_03890293-448
Pseudobacteroides cellulosolvens, DSM 2933 WP_036939115.1:NEIHKHHH_03366286-444
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_11289:GJLLLGJL_00279300-460
Paenibacillus guangzhouensis, KCTC 33171 WP_152395589.1:KDFAKKPF_04621273-431
Clostridium acetobutylicum, ATCC 824 OJAMHIDJ_00755298-463
Syntrophomonas erecta, DSM 16215 OINOEOOJ_01996301-461
FD_25_22, AnGL7 AnGL7_03002320-478
FD_25_27, AnGL8 AnGL8_02829324-482
FD_MS_7_1, AnGL28 AnGL28_01063299-458
AnGL28_02450321-477
FD_SO4_25_1_F22, AnGL30 AnGL30_00890331-489
FD_SO4_37_1, AnGL2 AnGL2_00193299-458
AnGL2_01579321-477
FD_YE_25_21, AnGL21 AnGL21_00325331-490
FD_YE_37_3, AnGL26 AnGL26_02078320-479
FD_YE_37_8_2, AnGL3 AnGL3_01806325-483
Syntrophus buswellii, Sbus Sbus_01356326-485
Syntrophomonas curvata, Scurva Scurva_00333298-458
Syntrophomonas erecta sporosyntropha, Sespor Sespor_01576301-461
Syntrophomonas wolfei methylbutyratica, Swm Swm_00252300-460
Terrisporobacter hibernicus, AnGL54 AnGL54_03928285-444
FD-25-21, AnGL21 AnGL21_03224320-478
Sunxiuqinia elliptica, AnGL22 AnGL22_02075320-479
Paraclostridium benzoelyticum, AnGL27 AnGL27_01006288-446
FD-MS-7-8, AnGL9 AnGL9_01306299-457
Methylobacterium radiotolerans, GTSA1 PaGL#34_02680348-508
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_03016330-489
Syntrophomonas erecta, GB-438 Ga0610585_01996301-461
Variovorax sp., EBFNA2 PaGL#33_00511371-528
PaGL#33_02537314-469
Variovorax paradoxus, 2u118 PaGL#32_00501371-528
PaGL#32_01995308-464
Maridesulfovibrio salexigens, AnGL23 AnGL23_00952309-469
Exiguobacterium mexicanum, AnGL24 AnGL24_02158229-374
Clostridium subterminale, CB-LS10-1 AnGL53_02561301-459
Priestia megaterium, 10L1 PaGL#57_02495272-431
PaGL#57_06525284-444
Variovorax paradoxus, SPNA7 PaGL#43_00478371-528
PaGL#43_02105321-477
Methylorubrum populi, CTY4 PaGL#39_02203344-503
Fictibacillus phosphorivorans, TY7 PaGL#38_04013278-439
Syntrophomonas wolfei, saponavida Swsap_01383303-462
Bacillus subtilis, 30VD-1 PaGL#66_00879274-434
Peribacillus frigoritolerans, 30N-5 PaGL#67_00593282-443
PaGL#67_05072291-451
Sphingomonas sp., CR2A3 PaGL#62_02929334-494
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_00757285-444
MPOB, Sfum 639702836:Sfum_02130324-483
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_105123:Spalm_01000300-460
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_11289:Swol_00279300-460
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_14222:Szehn_02367301-462
Syntrophus aciditrophicus, SB 637859540:SYN_01140326-485
Syntrophus gentianae, DSM8423 Ga0074853_10891:Sgen_01398327-486
Mucilaginibacter gossypii, cycad 4 PaGL#42_01238330-489
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