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Spalm_01664 Locus tags: • Sequence Length: 462

Syntrophomonas palmitatica, JCM14374 Spalm Gs0110775

5050100100150150200200250250300300350350400400450450500500
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Spalm_01663 Spalm_00619 Spalm_01258 Spalm_00399 Spalm_01998 Spalm_01664 Spalm_01780 Spalm_01119 Spalm_00980 Spalm_01259 Spalm_00118 
    [PF05496]_[PF16193]_[PF12002]

    [21:PF05496]_[188:PF16193]_[270:PF12002]

    [14:IPR027417]_[21:IPR008824]_[49:IPR003593]_[188:IPR032423]_[254:IPR008921]_[270:IPR021886]

Looking for similar signatures in the working genomes

PF05496:RuvB_N. Holliday junction DNA helicase RuvB P-loop domain

Found 90 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003516530.1:LOMAGDGF_0166011-132
WP_003512257.1:LOMAGDGF_0212119-178
Clostridium acetobutylicum, DSM 1731 WP_010963649.1:FHOCHPCF_0037120-141
WP_010965582.1:FHOCHPCF_0232019-176
Acetivibrio alkalicellulosi, DSM 17461 2510062539:NJMEOJLD_0273819-178
Pseudobacteroides cellulosolvens, DSM 2933 WP_036938378.1:NEIHKHHH_0357320-179
Ruminococcus albus_7, DSM 20455 WP_013499165.1:HCIAFFOI_0264029-188
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_11486:GJLLLGJL_0047421-143
Ga0065332_111523:GJLLLGJL_0149321-180
Paenibacillus guangzhouensis, KCTC 33171 WP_152391732.1:KDFAKKPF_0013520-179
Clostridium acetobutylicum, ATCC 824 WP_010963649.1:OJAMHIDJ_0037120-141
WP_010965582.1:OJAMHIDJ_0232919-176
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_171003500.1:PROKKA_0149220-179
WP_137695813.1:PROKKA_0225512-131
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0046919-137
OINOEOOJ_0150720-179
FD_25_22, AnGL7 AnGL7_0290622-181
FD_25_27, AnGL8 AnGL8_0091722-181
FD_MS_7_1, AnGL28 AnGL28_0052615-174
AnGL28_0208925-147
FD_SO4_25_1_F22, AnGL30 AnGL30_0105122-181
FD_SO4_37_1, AnGL2 AnGL2_0121825-147
AnGL2_0320515-174
FD_YE_25_21, AnGL21 AnGL21_0374316-137
AnGL21_0100824-183
FD_YE_37_3, AnGL26 AnGL26_0203522-180
FD_YE_37_8_2, AnGL3 AnGL3_0205721-180
FD_YE_37_9_2, AnGL4 AnGL4_0337620-179
Syntrophus buswellii, Sbus Sbus_0116021-140
Sbus_0211321-180
Syntrophomonas curvata, Scurva Scurva_0096221-139
Scurva_0200322-181
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0053519-137
Sespor_0213220-179
Syntrophomonas wolfei methylbutyratica, Swm Swm_0049921-143
Swm_0166521-180
Terrisporobacter hibernicus, AnGL54 AnGL54_0281025-184
FD-25-21, AnGL21 AnGL21_0332022-181
Sunxiuqinia elliptica, AnGL22 AnGL22_0203222-180
Paraclostridium benzoelyticum, AnGL27 AnGL27_0338623-182
FD-MS-7-8, AnGL9 AnGL9_0029415-174
AnGL9_0230625-147
FD-YE-37-9-3, AnGL29 AnGL29_0063420-179
Methylobacterium radiotolerans, GTSA1 PaGL#34_0092424-183
PaGL#34_0488626-185
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0503022-181
Syntrophomonas erecta, GB-438 Ga0610585_0046919-137
Ga0610585_0150720-179
Variovorax sp., EBFNA2 PaGL#33_0534631-190
Variovorax paradoxus, 2u118 PaGL#32_0461731-190
Dietzia cinnamea, 55 PaGL#56_0168236-195
Maridesulfovibrio salexigens, AnGL23 AnGL23_003429-168
AnGL23_0134414-122
Exiguobacterium mexicanum, AnGL24 AnGL24_0103720-179
Clostridium subterminale, CB-LS10-1 AnGL53_0095820-178
Priestia megaterium, 10L1 PaGL#57_0290820-179
PaGL#57_029319-128
Variovorax paradoxus, SPNA7 PaGL#43_0475931-190
Methanospirillum lacunae, Ki8-1 MLKi8_0214419-178
Geodermatophilus sp., RDM14 PaGL#36_0206637-195
Methylorubrum populi, CTY4 PaGL#39_0469558-217
Fictibacillus phosphorivorans, TY7 PaGL#38_0339321-147
PaGL#38_0341320-179
Methanospirillum hungatei, GP1 MhGP1_0270819-178
Methanospirillum stamsii, Pt1 MLKi8_0301119-178
Syntrophomonas wolfei, saponavida Swsap_0051121-143
Swsap_0213522-181
Bacillus subtilis, 30VD-1 PaGL#66_0156920-179
PaGL#66_015907-125
Peribacillus frigoritolerans, 30N-5 PaGL#67_0200820-179
PaGL#67_020869-124
Micromonospora inositola, Utrum1 PaGL#61_0243121-180
Sphingomonas sp., CR2A3 PaGL#62_0222520-179
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_0361325-184
Niallia taxi, AG-1 PaGL#37_0282521-180
Methanospirillum.hungatei GP1, MhGP1 8064046821:MhGP1_0019519-178
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_111796:Mhun_0179819-178
MPOB, Sfum 639701618:Sfum_0088924-141
639701757:Sfum_0103120-179
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_11269:Spalm_0185121-180
Ga0128340_110102:Spalm_0166421-140
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_11486:Swol_0047421-143
Ga0065332_111523:Swol_0149321-180
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_13899:Szehn_0221021-180
Syntrophus aciditrophicus, SB 637859060:SYN_0070221-180
637860194:SYN_0176621-140
Syntrophus gentianae, DSM8423 Ga0074853_1467:Sgen_0324321-180
Ga0074853_105157:Sgen_0097721-140
Mucilaginibacter gossypii, cycad 4 PaGL#42_0098522-181
Ruminococcus callidus, ATCC 27760 Rcal_0158328-187

PF16193:AAA_assoc_2. AAA C-terminal domain

Found 61 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003516530.1:LOMAGDGF_01660179-260
Clostridium acetobutylicum, DSM 1731 WP_010963649.1:FHOCHPCF_00371186-266
WP_010964978.1:FHOCHPCF_01715174-254
Pseudobacteroides cellulosolvens, DSM 2933 WP_050754032.1:NEIHKHHH_01531192-273
Ruminococcus albus_7, DSM 20455 WP_013498458.1:HCIAFFOI_01857175-254
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_11486:GJLLLGJL_00474189-269
Paenibacillus guangzhouensis, KCTC 33171 WP_152397029.1:KDFAKKPF_00157190-267
Clostridium acetobutylicum, ATCC 824 WP_010963649.1:OJAMHIDJ_00371186-266
WP_010964978.1:OJAMHIDJ_01722174-254
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137695813.1:PROKKA_02255180-260
Syntrophomonas erecta, DSM 16215 OINOEOOJ_00469187-266
FD_25_22, AnGL7 AnGL7_01569184-263
FD_25_27, AnGL8 AnGL8_02050189-268
FD_MS_7_1, AnGL28 AnGL28_02089194-272
FD_SO4_25_1_F22, AnGL30 AnGL30_01801180-251
FD_SO4_37_1, AnGL2 AnGL2_01218194-272
FD_YE_25_21, AnGL21 AnGL21_03743184-263
AnGL21_00967189-268
FD_YE_37_3, AnGL26 AnGL26_03028183-252
FD_YE_37_8_2, AnGL3 AnGL3_03455184-254
FD_YE_37_9_2, AnGL4 AnGL4_03028188-269
Syntrophus buswellii, Sbus Sbus_01160190-270
Syntrophomonas curvata, Scurva Scurva_00962191-269
Syntrophomonas erecta sporosyntropha, Sespor Sespor_00535187-266
Syntrophomonas wolfei methylbutyratica, Swm Swm_00499189-269
Terrisporobacter hibernicus, AnGL54 AnGL54_02028176-255
FD-25-21, AnGL21 AnGL21_00987184-263
Sunxiuqinia elliptica, AnGL22 AnGL22_03024183-252
Paraclostridium benzoelyticum, AnGL27 AnGL27_01423176-255
FD-MS-7-8, AnGL9 AnGL9_02306194-272
FD-YE-37-9-3, AnGL29 AnGL29_00286188-269
Methylobacterium radiotolerans, GTSA1 PaGL#34_01773194-270
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_00660185-253
Syntrophomonas erecta, GB-438 Ga0610585_00469187-266
Variovorax sp., EBFNA2 PaGL#33_04887180-255
Variovorax paradoxus, 2u118 PaGL#32_01255180-254
Dietzia cinnamea, 55 PaGL#56_01670201-276
Maridesulfovibrio salexigens, AnGL23 AnGL23_01344163-237
Exiguobacterium mexicanum, AnGL24 AnGL24_01062183-263
Clostridium subterminale, CB-LS10-1 AnGL53_02177203-282
Priestia megaterium, 10L1 PaGL#57_01119174-254
PaGL#57_02931173-252
Variovorax paradoxus, SPNA7 PaGL#43_01247180-254
Geodermatophilus sp., RDM14 PaGL#36_02080191-269
Methylorubrum populi, CTY4 PaGL#39_00223187-263
Fictibacillus phosphorivorans, TY7 PaGL#38_03393189-270
Syntrophomonas wolfei, saponavida Swsap_00511190-268
Bacillus subtilis, 30VD-1 PaGL#66_01590171-251
Peribacillus frigoritolerans, 30N-5 PaGL#67_02086173-253
Micromonospora inositola, Utrum1 PaGL#61_02455208-285
Sphingomonas sp., CR2A3 PaGL#62_00054206-281
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_02831176-255
Niallia taxi, AG-1 PaGL#37_02802174-252
MPOB, Sfum 639701618:Sfum_00889196-273
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_110102:Spalm_01664188-270
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_11486:Swol_00474189-269
Syntrophomonas zehnderi, OL-4 Szehn Szehn_00672191-269
Syntrophus aciditrophicus, SB 637860194:SYN_01766190-270
Syntrophus gentianae, DSM8423 Ga0074853_105157:Sgen_00977191-270
Mucilaginibacter gossypii, cycad 4 PaGL#42_04072180-253
Ruminococcus callidus, ATCC 27760 Rcal_02510174-253

PF12002:MgsA_C. MgsA AAA+ ATPase C terminal

Found 62 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003516530.1:LOMAGDGF_01660260-425
Clostridium acetobutylicum, DSM 1731 WP_010963649.1:FHOCHPCF_00371266-432
WP_010964978.1:FHOCHPCF_01715254-420
Pseudobacteroides cellulosolvens, DSM 2933 WP_050754032.1:NEIHKHHH_01531273-440
Ruminococcus albus_7, DSM 20455 WP_013498458.1:HCIAFFOI_01857254-420
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_11486:GJLLLGJL_00474269-435
Paenibacillus guangzhouensis, KCTC 33171 WP_152397029.1:KDFAKKPF_00157269-429
Clostridium acetobutylicum, ATCC 824 WP_010963649.1:OJAMHIDJ_00371266-432
WP_010964978.1:OJAMHIDJ_01722254-420
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137695813.1:PROKKA_02255260-427
Syntrophomonas erecta, DSM 16215 OINOEOOJ_00469266-431
FD_25_22, AnGL7 AnGL7_01569263-430
FD_25_27, AnGL8 AnGL8_02050268-435
FD_MS_7_1, AnGL28 AnGL28_02089272-431
FD_SO4_25_1_F22, AnGL30 AnGL30_01801251-418
FD_SO4_37_1, AnGL2 AnGL2_01218272-431
FD_YE_25_21, AnGL21 AnGL21_03743263-429
AnGL21_00967268-435
FD_YE_37_3, AnGL26 AnGL26_03028252-419
FD_YE_37_8_2, AnGL3 AnGL3_03455254-420
FD_YE_37_9_2, AnGL4 AnGL4_03028269-433
Syntrophus buswellii, Sbus Sbus_01160270-439
Syntrophomonas curvata, Scurva Scurva_00962269-433
Syntrophomonas erecta sporosyntropha, Sespor Sespor_00535266-431
Syntrophomonas wolfei methylbutyratica, Swm Swm_00499269-435
Terrisporobacter hibernicus, AnGL54 AnGL54_02028255-420
FD-25-21, AnGL21 AnGL21_00987263-430
Sunxiuqinia elliptica, AnGL22 AnGL22_03024252-419
Paraclostridium benzoelyticum, AnGL27 AnGL27_0117356-163
AnGL27_01423255-420
FD-MS-7-8, AnGL9 AnGL9_02306272-431
FD-YE-37-9-3, AnGL29 AnGL29_00286269-433
Methylobacterium radiotolerans, GTSA1 PaGL#34_01773270-436
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_00660253-420
Syntrophomonas erecta, GB-438 Ga0610585_00469266-431
Variovorax sp., EBFNA2 PaGL#33_04887255-422
Variovorax paradoxus, 2u118 PaGL#32_01255254-421
Dietzia cinnamea, 55 PaGL#56_01670276-442
Maridesulfovibrio salexigens, AnGL23 AnGL23_01344237-401
Exiguobacterium mexicanum, AnGL24 AnGL24_01062263-431
Clostridium subterminale, CB-LS10-1 AnGL53_02177282-448
Priestia megaterium, 10L1 PaGL#57_01119254-416
PaGL#57_02931252-416
Variovorax paradoxus, SPNA7 PaGL#43_01247254-421
Geodermatophilus sp., RDM14 PaGL#36_02080269-435
Methylorubrum populi, CTY4 PaGL#39_00223263-429
Fictibacillus phosphorivorans, TY7 PaGL#38_03393270-435
Syntrophomonas wolfei, saponavida Swsap_00511268-433
Bacillus subtilis, 30VD-1 PaGL#66_01590251-417
Peribacillus frigoritolerans, 30N-5 PaGL#67_02086253-419
Micromonospora inositola, Utrum1 PaGL#61_02455285-448
Sphingomonas sp., CR2A3 PaGL#62_00054281-447
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_02831255-420
Niallia taxi, AG-1 PaGL#37_02802252-420
MPOB, Sfum 639701618:Sfum_00889273-438
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_110102:Spalm_01664270-436
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_11486:Swol_00474269-435
Syntrophomonas zehnderi, OL-4 Szehn Szehn_00672269-433
Syntrophus aciditrophicus, SB 637860194:SYN_01766270-439
Syntrophus gentianae, DSM8423 Ga0074853_105157:Sgen_00977270-439
Mucilaginibacter gossypii, cycad 4 PaGL#42_04072253-420
Ruminococcus callidus, ATCC 27760 Rcal_02510253-417
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