SMPP Home

Sgen_00260 Locus tags: • Sequence Length: 775

Syntrophus gentianae, DSM8423 GCF_900109885.1

5050100100150150200200250250300300350350400400450450500500550550600600650650700700750750800800
Show complete sequence
Click domain (colored bar) to show sequence
Sgen_01801 Sgen_01709 Sgen_02293 Sgen_02481 Sgen_02535 Sgen_00260 Sgen_01976 Sgen_00048 Sgen_02215 Sgen_00484 Sgen_01351 
    [SP]_[PF03968]_[PF19838]_[PF04453]_[TM]

    [SP]_[53:PF03968]_[200:PF19838]_[306:PF04453]_[TM]

    [SP]_[53:IPR005653]_[200:IPR045659]_[306:IPR007543]_[TM]

Looking for similar signatures in the working genomes

PF03968:LptD_N. LptA/(LptD N-terminal domain) LPS transport protein

Found 29 similar signatures
FD_25_22, AnGL7 AnGL7_0274977-196
AnGL7_0300030-141
FD_25_27, AnGL8 AnGL8_0267048-180
AnGL8_0282729-142
FD_MS_7_1, AnGL28 AnGL28_0144190-184
222-321
FD_SO4_37_1, AnGL2 AnGL2_0057090-184
222-321
FD_YE_25_21, AnGL21 AnGL21_0032729-141
AnGL21_0279758-191
Syntrophus buswellii, Sbus Sbus_0050153-184
Sbus_0135451-170
FD-25-21, AnGL21 AnGL21_0322630-141
AnGL21_0347177-196
FD-MS-7-8, AnGL9 AnGL9_0199793-190
228-333
Methylobacterium radiotolerans, GTSA1 PaGL#34_0591644-179
Variovorax sp., EBFNA2 PaGL#33_0050952-170
Variovorax paradoxus, 2u118 PaGL#32_0049944-162
Maridesulfovibrio salexigens, AnGL23 AnGL23_00950405-517
Variovorax paradoxus, SPNA7 PaGL#43_0047644-162
Methylorubrum populi, CTY4 PaGL#39_0220155-192
Sphingomonas sp., CR2A3 PaGL#62_0075868-207
PaGL#62_0293136-144
MPOB, Sfum 639702838:Sfum_0213259-176
Syntrophus aciditrophicus, SB 637858641:SYN_0031056-186
637859538:SYN_0113851-170
Syntrophus gentianae, DSM8423 Ga0074853_10249:Sgen_0026053-183
Sgen_0140045-164

PF19838:LptD_2. LptD protein

Found 8 similar signatures
FD_SO4_25_1_F22, AnGL30 AnGL30_01572261-736
FD_YE_37_3, AnGL26 AnGL26_04298218-696
FD_YE_37_8_2, AnGL3 AnGL3_03642210-693
Sunxiuqinia elliptica, AnGL22 AnGL22_04294218-696
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_03413228-710
Maridesulfovibrio salexigens, AnGL23 AnGL23_02635164-269
Syntrophus gentianae, DSM8423 Ga0074853_10249:Sgen_00260200-305
Mucilaginibacter gossypii, cycad 4 PaGL#42_01279235-717

PF04453:LptD. LPS transport system D

Found 15 similar signatures
FD_25_22, AnGL7 AnGL7_02749301-679
FD_25_27, AnGL8 AnGL8_02670288-685
FD_YE_25_21, AnGL21 AnGL21_02797298-680
Syntrophus buswellii, Sbus Sbus_00501306-686
FD-25-21, AnGL21 AnGL21_03471301-679
Methylobacterium radiotolerans, GTSA1 PaGL#34_00723310-744
Variovorax sp., EBFNA2 PaGL#33_06039341-752
Variovorax paradoxus, 2u118 PaGL#32_05258337-749
Maridesulfovibrio salexigens, AnGL23 AnGL23_02635279-678
Variovorax paradoxus, SPNA7 PaGL#43_05474337-749
Methylorubrum populi, CTY4 PaGL#39_03267313-747
Sphingomonas sp., CR2A3 PaGL#62_00758324-692
MPOB, Sfum 639702439:Sfum_01719303-670
Syntrophus aciditrophicus, SB 637858641:SYN_00310307-691
Syntrophus gentianae, DSM8423 Ga0074853_10249:Sgen_00260306-691
Search by locus tag: Search
↑ Top




v4.1 @copyright 2025 UCLA