SMPP Home

PROKKA_00001 Locus tags: • Sequence Length: 460

Ruminiclostridium herbifermentans MA18, DSM 109966 GCF_005473905.2

5050100100150150200200250250300300350350400400450450500500
Show complete sequence
Click domain (colored bar) to show sequence
PROKKA_00001 PROKKA_00002 PROKKA_00004 PROKKA_00006 
    [PF11638]_[PF00308]_[PF08299]

    [6:PF11638]_[102:PF00308]_[348:PF08299]

    [6:IPR024633]_[102:IPR013317]_[102:IPR027417]_[134:IPR003593]_[135:IPR020591]_[167:IPR020591]_[199:IPR020591]_[233:IPR020591]_[333:IPR010921]_[346:IPR013159]_[348:IPR013159]_[348:IPR013159]_[396:IPR020591]

Looking for similar signatures in the working genomes

PF11638:DnaA_N. DnaA N-terminal domain

Found 53 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003516465.1:LOMAGDGF_000015-68
Clostridium acetobutylicum, DSM 1731 WP_010963330.1:FHOCHPCF_000015-64
Acetivibrio alkalicellulosi, DSM 17461 2510060862:NJMEOJLD_010995-68
Pseudobacteroides cellulosolvens, DSM 2933 WP_036943255.1:NEIHKHHH_050806-68
Ruminococcus albus_7, DSM 20455 WP_013496766.1:HCIAFFOI_0000127-78
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_111:GJLLLGJL_000019-67
Paenibacillus guangzhouensis, KCTC 33171 WP_152395805.1:KDFAKKPF_048966-69
Clostridium acetobutylicum, ATCC 824 WP_010963330.1:OJAMHIDJ_000015-64
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697050.1:PROKKA_000016-68
Syntrophomonas erecta, DSM 16215 OINOEOOJ_022148-66
FD_25_22, AnGL7 AnGL7_000014-62
FD_25_27, AnGL8 AnGL8_010730-41
FD_MS_7_1, AnGL28 AnGL28_001546-67
FD_SO4_25_1_F22, AnGL30 AnGL30_002728-68
FD_SO4_37_1, AnGL2 AnGL2_028336-67
FD_YE_25_21, AnGL21 AnGL21_000010-41
FD_YE_37_3, AnGL26 AnGL26_000017-68
FD_YE_37_8_2, AnGL3 AnGL3_000011-44
Syntrophus buswellii, Sbus Sbus_000012-64
Syntrophomonas curvata, Scurva Scurva_000018-68
Syntrophomonas erecta sporosyntropha, Sespor Sespor_013588-66
Syntrophomonas wolfei methylbutyratica, Swm Swm_000019-67
Terrisporobacter hibernicus, AnGL54 AnGL54_031654-66
FD-25-21, AnGL21 AnGL21_026194-62
Sunxiuqinia elliptica, AnGL22 AnGL22_000017-68
Paraclostridium benzoelyticum, AnGL27 AnGL27_006344-66
FD-MS-7-8, AnGL9 AnGL9_005426-67
Methylobacterium radiotolerans, GTSA1 PaGL#34_0010424-86
Syntrophomonas erecta, GB-438 Ga0610585_022148-66
Variovorax sp., EBFNA2 PaGL#33_000017-70
Variovorax paradoxus, 2u118 PaGL#32_000017-70
Maridesulfovibrio salexigens, AnGL23 AnGL23_000014-62
AnGL23_000023-64
Exiguobacterium mexicanum, AnGL24 AnGL24_000475-68
Clostridium subterminale, CB-LS10-1 AnGL53_000125-68
Priestia megaterium, 10L1 PaGL#57_022605-66
Variovorax paradoxus, SPNA7 PaGL#43_000017-70
Methylorubrum populi, CTY4 PaGL#39_0000123-84
Fictibacillus phosphorivorans, TY7 PaGL#38_003805-65
Syntrophomonas wolfei, saponavida Swsap_011687-67
Bacillus subtilis, 30VD-1 PaGL#66_001936-65
Peribacillus frigoritolerans, 30N-5 PaGL#67_002755-65
Sphingomonas sp., CR2A3 PaGL#62_000017-65
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_000014-66
Niallia taxi, AG-1 PaGL#37_000015-66
PaGL#37_05837283-335
MPOB, Sfum 639700753:Sfum_000013-59
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_11337:Spalm_019248-68
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_111:Swol_000019-67
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_11248:Szehn_008399-70
Syntrophus aciditrophicus, SB SYN_000012-64
Syntrophus gentianae, DSM8423 Sgen_006422-64
Mucilaginibacter gossypii, cycad 4 PaGL#42_000016-67

PF00308:Bac_DnaA. Bacterial DnaA ATPAse domain

Found 70 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003516465.1:LOMAGDGF_00001106-323
Clostridium acetobutylicum, DSM 1731 WP_010963330.1:FHOCHPCF_00001108-326
Acetivibrio alkalicellulosi, DSM 17461 2510060862:NJMEOJLD_01099107-325
Pseudobacteroides cellulosolvens, DSM 2933 WP_036943255.1:NEIHKHHH_05080105-323
Ruminococcus albus_7, DSM 20455 WP_013496766.1:HCIAFFOI_00001116-337
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_111:GJLLLGJL_0000195-312
Paenibacillus guangzhouensis, KCTC 33171 WP_152395805.1:KDFAKKPF_04896112-329
Clostridium acetobutylicum, ATCC 824 WP_010963330.1:OJAMHIDJ_00001108-326
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697050.1:PROKKA_00001102-319
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0221495-312
FD_25_22, AnGL7 AnGL7_00001123-340
AnGL7_0272849-221
FD_25_27, AnGL8 AnGL8_01073102-319
FD_MS_7_1, AnGL28 AnGL28_00154116-333
FD_SO4_25_1_F22, AnGL30 AnGL30_00272134-349
FD_SO4_37_1, AnGL2 AnGL2_02833116-333
FD_YE_25_21, AnGL21 AnGL21_00001110-327
FD_YE_37_3, AnGL26 AnGL26_00001139-357
FD_YE_37_8_2, AnGL3 AnGL3_00001118-335
FD_YE_37_9_2, AnGL4 AnGL4_01710111-328
Syntrophus buswellii, Sbus Sbus_00001113-331
Syntrophomonas curvata, Scurva Scurva_0000195-312
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0135895-312
Syntrophomonas wolfei methylbutyratica, Swm Swm_0000195-312
Terrisporobacter hibernicus, AnGL54 AnGL54_03165102-320
FD-25-21, AnGL21 AnGL21_02619123-340
AnGL21_0349249-221
Sunxiuqinia elliptica, AnGL22 AnGL22_00001139-357
Paraclostridium benzoelyticum, AnGL27 AnGL27_00634105-323
AnGL27_0147357-225
AnGL27_015046-142
FD-MS-7-8, AnGL9 AnGL9_00542116-333
FD-YE-37-9-3, AnGL29 AnGL29_02435111-328
Methylobacterium radiotolerans, GTSA1 PaGL#34_00104157-378
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_00001100-318
Syntrophomonas erecta, GB-438 Ga0610585_0221495-312
Variovorax sp., EBFNA2 PaGL#33_00001123-341
PaGL#33_04662101-213
Variovorax paradoxus, 2u118 PaGL#32_00001123-341
PaGL#32_01451100-212
Dietzia cinnamea, 55 PaGL#56_00001152-370
Maridesulfovibrio salexigens, AnGL23 AnGL23_00001120-333
AnGL23_0330598-311
Exiguobacterium mexicanum, AnGL24 AnGL24_00047121-338
AnGL24_01968146-242
Clostridium subterminale, CB-LS10-1 AnGL53_00012112-330
Priestia megaterium, 10L1 PaGL#57_02260110-327
Variovorax paradoxus, SPNA7 PaGL#43_00001123-341
PaGL#43_01450100-212
Geodermatophilus sp., RDM14 PaGL#36_00128231-449
Methylorubrum populi, CTY4 PaGL#39_00001160-381
Fictibacillus phosphorivorans, TY7 PaGL#38_00380113-330
Syntrophomonas wolfei, saponavida Swsap_0116891-308
Bacillus subtilis, 30VD-1 PaGL#66_00193110-327
PaGL#66_01441162-271
Peribacillus frigoritolerans, 30N-5 PaGL#67_00275112-329
Micromonospora inositola, Utrum1 PaGL#61_00208272-490
Sphingomonas sp., CR2A3 PaGL#62_00001110-328
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_00001102-320
Niallia taxi, AG-1 PaGL#37_00001109-326
PaGL#37_02948129-231
MPOB, Sfum 639700753:Sfum_00001109-325
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_11337:Spalm_0192494-311
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_111:Swol_0000195-312
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_11248:Szehn_0083994-311
Syntrophus aciditrophicus, SB SYN_00001112-330
Syntrophus gentianae, DSM8423 Sgen_00642113-331
Mucilaginibacter gossypii, cycad 4 PaGL#42_00001136-354
Ruminococcus callidus, ATCC 27760 Rcal_00071118-334
Rcal_023657-165

PF08299:Bac_DnaA_C. Bacterial dnaA protein helix-turn-helix

Found 60 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003516465.1:LOMAGDGF_00001352-419
Clostridium acetobutylicum, DSM 1731 WP_010963330.1:FHOCHPCF_00001353-422
Acetivibrio alkalicellulosi, DSM 17461 2510060862:NJMEOJLD_01099353-421
Pseudobacteroides cellulosolvens, DSM 2933 WP_036943255.1:NEIHKHHH_05080351-419
Ruminococcus albus_7, DSM 20455 WP_013496766.1:HCIAFFOI_00001367-433
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_111:GJLLLGJL_00001340-408
Paenibacillus guangzhouensis, KCTC 33171 WP_152395805.1:KDFAKKPF_04896357-426
Clostridium acetobutylicum, ATCC 824 WP_010963330.1:OJAMHIDJ_00001353-422
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697050.1:PROKKA_00001348-416
Syntrophomonas erecta, DSM 16215 OINOEOOJ_02214340-408
FD_25_22, AnGL7 AnGL7_00001366-435
FD_25_27, AnGL8 AnGL8_01073345-414
FD_MS_7_1, AnGL28 AnGL28_00154361-429
FD_SO4_25_1_F22, AnGL30 AnGL30_00272378-446
FD_SO4_37_1, AnGL2 AnGL2_02833361-429
FD_YE_25_21, AnGL21 AnGL21_00001353-422
FD_YE_37_3, AnGL26 AnGL26_00001384-453
FD_YE_37_8_2, AnGL3 AnGL3_00001363-432
FD_YE_37_9_2, AnGL4 AnGL4_01710359-428
Syntrophus buswellii, Sbus Sbus_00001359-427
Syntrophomonas curvata, Scurva Scurva_00001340-409
Syntrophomonas erecta sporosyntropha, Sespor Sespor_01358340-408
Syntrophomonas wolfei methylbutyratica, Swm Swm_00001340-408
Terrisporobacter hibernicus, AnGL54 AnGL54_03165348-416
FD-25-21, AnGL21 AnGL21_02619366-435
Sunxiuqinia elliptica, AnGL22 AnGL22_00001384-453
Paraclostridium benzoelyticum, AnGL27 AnGL27_00634351-419
FD-MS-7-8, AnGL9 AnGL9_00542361-429
FD-YE-37-9-3, AnGL29 AnGL29_02435359-428
Methylobacterium radiotolerans, GTSA1 PaGL#34_00104406-475
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_00001346-414
Syntrophomonas erecta, GB-438 Ga0610585_02214340-408
Variovorax sp., EBFNA2 PaGL#33_00001367-436
Variovorax paradoxus, 2u118 PaGL#32_00001367-436
Dietzia cinnamea, 55 PaGL#56_00001399-466
Maridesulfovibrio salexigens, AnGL23 AnGL23_00001363-430
AnGL23_03305338-407
Exiguobacterium mexicanum, AnGL24 AnGL24_00047367-435
Clostridium subterminale, CB-LS10-1 AnGL53_00012357-426
Priestia megaterium, 10L1 PaGL#57_02260355-424
Variovorax paradoxus, SPNA7 PaGL#43_00001367-436
Geodermatophilus sp., RDM14 PaGL#36_00128479-545
Methylorubrum populi, CTY4 PaGL#39_00001409-478
PaGL#39_0340767-133
Fictibacillus phosphorivorans, TY7 PaGL#38_00380359-427
Syntrophomonas wolfei, saponavida Swsap_01168336-405
Bacillus subtilis, 30VD-1 PaGL#66_00193355-424
Peribacillus frigoritolerans, 30N-5 PaGL#67_00275359-426
Micromonospora inositola, Utrum1 PaGL#61_00208518-586
Sphingomonas sp., CR2A3 PaGL#62_00001354-423
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_00001348-416
Niallia taxi, AG-1 PaGL#37_00001355-423
MPOB, Sfum 639700753:Sfum_00001352-420
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_11336:Spalm_019230-34
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_111:Swol_00001340-408
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_11248:Szehn_00839339-408
Syntrophus aciditrophicus, SB SYN_00001358-426
Syntrophus gentianae, DSM8423 Sgen_00642359-427
Mucilaginibacter gossypii, cycad 4 PaGL#42_00001382-450
Ruminococcus callidus, ATCC 27760 Rcal_00071362-431
Search by locus tag: Search
↑ Top




v4.1 @copyright 2025 UCLA