Cellulosome Database Search

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Genome ifo

Syntrophobacter.fumaroxidans.MPOB: MPOB, Sfum [-] (IMG)

Genbanks info:

Genbank_acc: 639704802:Sfum_04124
Genome uid: 407
4897547-4900048 [+] (833)

Sequence:

ITKRPLSYWVKTSNMKLQVLLLGLILITVAARVFPLEMQKKIVNQAIGARKVDLLFLYCGLYLAAVLLASGLKYVTTVLQ
THIGQEALNRIRKGLYEHILTLPLSFFQKSSPGMVVSSLVTEVANAGEFVGAAISTPAINLLTLLAFGAYMFYLNPLLAV
LSLATYPIVIYLVPKLQQRSNKANKQRVDITRKISSKVDEAISGIHEIHGNDSFRIENRKYGALVDQLFRVRVIWILYKN
GVKVLNNLFQNLGPFILFLVGGYLAIQGRFDLGALVAFLSAYEKLYDPWKELMEFYQVYQDASVSYERIMEYFDVAPEHL
LEPPDREPYAFKGEVTTRDLSFTVPGGIQLLKQINLELKPGEQLALVGFSGSGKSTLAHCISQLHKYTGGTVEIDGHEVS
DLTKMDMAKNMGIVAQSPFIFDGTIRENLLYSCEAALGKNEDPEELPTLDEMIQVLQQVGIFADVLRFGLNTILHRDREA
ELVEKLIRVRHNFQEEYGEELADYFEFFDERHYLTYSGIAANLIFGSPNLDEFMIDRLPENRYFLDFLDEAQLRNPLISL
GRDLASMTVDILGNLPPDEVFFRNTPVTSDEFAETRALVNRMENVHLHELREEDRLMLLRLALRFTPGVHKLIALPPMME
NLILEGRHLFKDKISRERPEAVTSYAMNDYIYTQTILDNILFGKQTSDHPKAQERIGQSIVHLLVEEDLLEKVVEIGMEF
NVGTKGDRLSGGQRQKLAIARVFLKNPPILVMDEATSALDNASQKRIQNLLETRWKGKSTLIAVVHRLDTIKGFDKVAVM
KAGKIAEFGAYDELISRKGLLYELVHGPRASA

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:SIGNAL_PEPTIDE		Signal peptide region	0	32			4933846	1770885	19	135:all secretion /signal peptide, lipo	0	0	0	4067	3	1
2	PHOBIUS:SIGNAL_PEPTIDE_N_REGION		N-terminal region of a signal peptide.	0	17			4933844	1770885	21	135:all secretion /signal peptide, lipo	0	0	0	4067	3	2
3	DeepTMHMM:inside		inside	1	19			4951922	1770885	9730	0	0	0	4067	0	3
4	SUPERFAMILY:SSF90123	IPR036640	ABC transporter type 1, transmembrane domain superfamily	5	324			4933853	1770885	442	137:Transmembrane	0	0	0	4067	0	4
5	PHOBIUS:SIGNAL_PEPTIDE_H_REGION		Hydrophobic region of a signal peptide.	17	28			4933834	1770885	24	135:all secretion /signal peptide, lipo	0	0	0	4067	3	5
6	PROSITE_PROFILES:PS50929	IPR011527	ABC transporter integral membrane type-1 fused domain profile.	19	302			4933847	1770885	436	136:Membrane Protein	0	0	0	4067	0	6
7	DeepTMHMM:TMhelix		TMhelix	20	37			4951923	1770885	2056	141:DeepTMHMM: helix	0	0	0	4067	6	7
8	CDD:cd07346		ABC_6TM_exporters	27	310			4933849	1770885	3795	0	0	0	4067	0	8
9	PHOBIUS:SIGNAL_PEPTIDE_C_REGION		C-terminal region of a signal peptide.	28	32			4933845	1770885	26	135:all secretion /signal peptide, lipo	0	0	0	4067	3	9
10	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	32	55			4933843	1770885	3	136:Membrane Protein	0	0	0	4067	0	10
11	DeepTMHMM:outside		outside	38	60			4951924	1770885	10025	0	0	0	4067	0	11
12	PFAM:PF00664	IPR011527	ABC transporter transmembrane region	40	282	99.1	3.3E-28	4933833	1770885	432	137:Transmembrane	0	0	0	4067	0	12
13	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	55	76			4933837	1770885	5	136:Membrane Protein	0	0	0	4067	0	13
14	DeepTMHMM:TMhelix		TMhelix	61	81			4951925	1770885	2056	141:DeepTMHMM: helix	0	0	0	4067	6	14
15	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	76	129			4933839	1770885	18	136:Membrane Protein	0	0	0	4067	0	15
16	DeepTMHMM:inside		inside	82	133			4951926	1770885	9730	0	0	0	4067	0	16
17	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	129	151			4933836	1770885	5	136:Membrane Protein	0	0	0	4067	0	17
18	DeepTMHMM:TMhelix		TMhelix	134	154			4951927	1770885	2056	141:DeepTMHMM: helix	0	0	0	4067	6	18
19	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	151	156			4933842	1770885	3	136:Membrane Protein	0	0	0	4067	0	19
20	DeepTMHMM:outside		outside	155	157			4951928	1770885	10025	0	0	0	4067	0	20
21	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	156	174			4933838	1770885	5	136:Membrane Protein	0	0	0	4067	0	21
22	DeepTMHMM:TMhelix		TMhelix	158	178			4951929	1770885	2056	141:DeepTMHMM: helix	0	0	0	4067	6	22
23	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	174	248			4933840	1770885	18	136:Membrane Protein	0	0	0	4067	0	23
24	DeepTMHMM:inside		inside	179	241			4951930	1770885	9730	0	0	0	4067	0	24
25	DeepTMHMM:TMhelix		TMhelix	242	263			4951931	1770885	2056	141:DeepTMHMM: helix	0	0	0	4067	6	25
26	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	248	267			4933835	1770885	5	136:Membrane Protein	0	0	0	4067	0	26
27	DeepTMHMM:outside		outside	264	276			4951932	1770885	10025	0	0	0	4067	0	27
28	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	267	833			4933841	1770885	3	136:Membrane Protein	0	0	0	4067	0	28
29	DeepTMHMM:TMhelix		TMhelix	277	297			4951933	1770885	2056	141:DeepTMHMM: helix	0	0	0	4067	6	29
30	DeepTMHMM:inside		inside	298	833			4951934	1770885	9730	0	0	0	4067	0	30
31	PROSITE_PROFILES:PS50893	IPR003439	ATP-binding cassette, ABC transporter-type domain profile.	335	828			4933848	1770885	76	0	0	0	4067	0	31
32	SUPERFAMILY:SSF52540	IPR027417	P-loop containing nucleoside triphosphate hydrolase	338	814			4933852	1770885	78	0	0	0	4067	0	32
33	SUPERFAMILY:SSF52540	IPR027417	P-loop containing nucleoside triphosphate hydrolase	340	626			4933850	1770885	78	0	0	0	4067	0	33
34	PFAM:PF00005	IPR003439	ABC transporter	351	463	64.3	1.6E-17	4933832	1770885	75	0	0	0	4067	0	34
35	SMART:SM00382	IPR003593		360	813			4933830	1770885	1	0	0	0	4067	0	35
36	SUPERFAMILY:SSF52540	IPR027417	P-loop containing nucleoside triphosphate hydrolase	637	761			4933851	1770885	78	0	0	0	4067	0	36
37	PFAM:PF00005	IPR003439	ABC transporter	670	758	38.9	1.1E-9	4933831	1770885	75	0	0	0	4067	0	37

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