Cellulosome Database Search

This page is just for checking and is not meant to be part of the public site.

We will take the links to it out when ready.

Genome ifo

GCF_000007065.1: Methanosarcina mazei, Go1 [-] (ncbi)

Genbanks info:

Genbank_acc: WP_011032817.1:PCEFANMJ_00927
Genome uid: 22
1024823-1026958 [+] (711)

Sequence:

SKSSSKPVLVTCGLPYANGKAHIGHLRTYVPADIYARSLKKEGREVTFVCGSDTHGTPIVVNAEELGITPTELVEIYHKH
FDETFKQLGIYFDAFGTTDDPENHNRTHDIVSRLIEKGYVYPKIIEIAYCPACNRFLPDRYVEGACPHCGETARGDECDQ
GCGKHLEPGELQNPVCTICGGPAEYRQQEHFFFKLSEFSNYLMDYLSKDLGGTTNAINYARGWVKQGLTDWCITRNLEWG
VKFPGHEDLVVYVWVDAPIGYIAFTEEWAAQAGDSWEKFWKGDGEIVHFIGGDITYHHCIFWPAMLKGADYSVPTAVVAS
GMVKIEDRKFSKTRGYVVWVGEDYLDHGFHPDLLRYYLASYTSHTKELNFSWRVLQEKINAELVAVLGNFLYRTMLFAFK
NYGEVPEGEVEPEIRKEIEKALVEVKAAMEEYEFKKAVDSAMALASFGNTYFQSHEPWKLIKEDRDACGQVVYNCLHLAK
ALSLIFEPVIPQTMEKAWKGLGHESDIHAALYEETLVPLKAGTKLAKPEILFTKLEDDRIGEMEEIANQRVAAANAKRNG
VKGGEKEPSKSEGMGPSEASKASEKTVDVATAEEKVQVETLPVIDYEDFAKLDIRVGKVLLVEPVKKSKKLLRIEVDIGE
EKPRQLVAGMASYYTPEELVGKSVIVLANLKPAKLCGVESNGMMLAADDGGAIVAALMPDKEIKSGSRIR

metG

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:SIGNAL_PEPTIDE_N_REGION		N-terminal region of a signal peptide.	0	7			752179	37048	21	135:all secretion /signal peptide, lipo	13	1	1	902	3	1
2	PHOBIUS:SIGNAL_PEPTIDE		Signal peptide region	0	20			752177	37048	19	135:all secretion /signal peptide, lipo	13	0	1	902	3	2
3	SUPERFAMILY:SSF52374		-	6	385			752199	37048	12	13	0	1	902	0	3
4	CDD:cd00814	IPR033911	MetRS_core	7	371			752189	37048	1805	13	0	1	902	0	4
5	PHOBIUS:SIGNAL_PEPTIDE_H_REGION		Hydrophobic region of a signal peptide.	7	15			752172	37048	24	135:all secretion /signal peptide, lipo	13	1	1	902	3	5
6	PFAM:PF09334	IPR015413	tRNA synthetases class I (M)	8	396	514.6	0	752166	37048	1798	13	0	1	902	0	6
7	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	10	24			752136	37048	1797	13	0	1	902	0	7
8	PHOBIUS:SIGNAL_PEPTIDE_C_REGION		C-terminal region of a signal peptide.	15	20			752171	37048	26	135:all secretion /signal peptide, lipo	13	1	1	902	3	8
9	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	20	711			752175	37048	3	136:Membrane Protein	13	0	1	902	0	9
10	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	42	57			752137	37048	1797	13	0	1	902	0	10
11	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	90	102			752138	37048	1797	13	0	1	902	0	11
12	SUPERFAMILY:SSF57770	IPR029038	Methionyl-tRNA synthetase, Zn-domain	142	177			752196	37048	5913	13	0	1	902	0	12
13	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	251	263			752140	37048	1797	13	0	1	902	0	13
14	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	288	304			752139	37048	1797	13	0	1	902	0	14
15	CDD:cd07957	IPR041872	Anticodon_Ia_Met	379	502			752184	37048	1807	13	0	1	902	0	15
16	PRINTS:PR01041	IPR033911	Methionyl-tRNA synthetase signature	382	394			752141	37048	1797	13	0	1	902	0	16
17	SUPERFAMILY:SSF47323	IPR009080	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	387	621			752195	37048	726	13	0	1	902	0	17
18	PFAM:PF19303	IPR041872	Anticodon binding domain of methionyl tRNA ligase	407	545	79.2	2.9E-22	752168	37048	1803	13	0	1	902	0	18
19	CDD:cd02800	IPR004495	tRNA_bind_EcMetRS_like	604	711			752187	37048	1810	13	0	1	902	0	19
20	SUPERFAMILY:SSF50249	IPR012340	Nucleic acid-binding, OB-fold	607	710			752192	37048	405	13	0	1	902	0	20
21	PROSITE_PROFILES:PS50886	IPR002547	tRNA-binding domain profile.	608	711			752181	37048	1804	13	0	1	902	0	21
22	PFAM:PF01588	IPR002547	Putative tRNA binding domain	614	708	93.5	6.3E-27	752163	37048	1799	13	0	1	902	0	22

↑ Top