Cellulosome Database Search

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Genome ifo

GCF_000007065.1: Methanosarcina mazei, Go1 [-] (ncbi)

Genbanks info:

Genbank_acc: WP_226987562.1:PCEFANMJ_01876
Genome uid: 22
2120602-2122620 [+] (672)

Sequence:

SGRELKNNRNIIFRIIYWAVIIGLLHVVSLSNNLLFHTLIELFSVIIAYIIFLVVWESKTFLENRYLLLIGISYFFIGTL
DLLHALSYERMGFFSWSGMNLPAQLWIASRYLESVSFLIAPLLLSNSRLLNLKTDISPVEKARFAWELFIVYSGITFVLF
LSIFVLRNFPDSYIEGRGLTDFLIISEYVISLILVCSLVLLYLKRDRFENHVFRLLTASIVLTIISEIIFARFTYVDDFS
FVTGHYFKLLSFYFVYRAVVSTGFSEPCSILFRELKQNEEALRRKTFFLQDDQGRIYRMLGVQTEESEDAFSTCNARINE
KTYSSLVKDIEGLIGFRFDDSKGTVFIDGDVEEITGYSTEDFLSHRVKWADLVLPEDQYLIFERINRSVSNPDHSIETEY
RIKRKNGEIRWIREFLQKFPEESKNSRQFQGFIHDITGRKKAEAALQKIEEVRIKEIHHRIKNNLQVISSLLSLEAEKFS
DRKMLESFRESQNRVASMALIHEELYKGSDMDTLDFSAYLRKLTADLLASYRVGNDKITLRLDLEQAHFDMDTSIPLGII
VNELVSNSLKHAFPEGKGGEIYIGLHRTEKIALKAGISGESVDCESGFDYTLTVADNGKGVPEETDFENADSLGLQLVNL
LVEQIDGCVKLERRQGTRFILGINVKNGVKT

	extraction_method	ipr_acc	domain	start	end	score	evalue	rowid	gbid	domain_id	mod_id	cat_id	redundant	used	ord	mod_group
1	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	0	11			718356	40500	18	136:Membrane Protein	15	0	1	1831	0	1
2	DeepTMHMM:inside		inside	1	11			794820	40500	9730	15	0	1	1831	0	2
3	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	11	29			718242	40500	5	136:Membrane Protein	15	0	1	1831	0	3
4	DeepTMHMM:TMhelix		TMhelix	12	31			794821	40500	2056	141:DeepTMHMM: helix	15	0	1	1831	5	4
5	PFAM:PF17159	IPR033425	Membrane-associated sensor domain	28	268	277.1	0	718219	40500	2614	136:Membrane Protein	15	0	1	1831	0	5
6	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	29	34			718366	40500	3	136:Membrane Protein	15	0	1	1831	0	6
7	DeepTMHMM:outside		outside	32	35			794822	40500	10025	15	0	1	1831	0	7
8	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	34	55			718243	40500	5	136:Membrane Protein	15	0	1	1831	0	8
9	DeepTMHMM:TMhelix		TMhelix	36	56			794823	40500	2056	141:DeepTMHMM: helix	15	0	1	1831	5	9
10	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	55	66			718360	40500	18	136:Membrane Protein	15	0	1	1831	0	10
11	DeepTMHMM:inside		inside	57	67			794824	40500	9730	15	0	1	1831	0	11
12	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	66	86			718240	40500	5	136:Membrane Protein	15	0	1	1831	0	12
13	DeepTMHMM:TMhelix		TMhelix	68	88			794986	40500	2056	141:DeepTMHMM: helix	15	0	1	1831	5	13
14	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	86	105			718361	40500	3	136:Membrane Protein	15	0	1	1831	0	14
15	DeepTMHMM:outside		outside	89	103			794987	40500	10025	15	0	1	1831	0	15
16	DeepTMHMM:TMhelix		TMhelix	104	125			794988	40500	2056	141:DeepTMHMM: helix	15	0	1	1831	5	16
17	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	105	125			718343	40500	5	136:Membrane Protein	15	0	1	1831	0	17
18	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	125	144			718359	40500	18	136:Membrane Protein	15	0	1	1831	0	18
19	DeepTMHMM:inside		inside	126	148			794989	40500	9730	15	0	1	1831	0	19
20	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	144	167			718241	40500	5	136:Membrane Protein	15	0	1	1831	0	20
21	DeepTMHMM:TMhelix		TMhelix	149	165			794990	40500	2056	141:DeepTMHMM: helix	15	0	1	1831	5	21
22	DeepTMHMM:outside		outside	166	182			794991	40500	10025	15	0	1	1831	0	22
23	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	167	182			718365	40500	3	136:Membrane Protein	15	0	1	1831	0	23
24	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	182	204			718239	40500	5	136:Membrane Protein	15	0	1	1831	0	24
25	DeepTMHMM:TMhelix		TMhelix	183	203			794992	40500	2056	141:DeepTMHMM: helix	15	0	1	1831	5	25
26	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	204	215			718358	40500	18	136:Membrane Protein	15	0	1	1831	0	26
27	DeepTMHMM:inside		inside	204	213			794993	40500	9730	15	0	1	1831	0	27
28	DeepTMHMM:TMhelix		TMhelix	214	232			794994	40500	2056	141:DeepTMHMM: helix	15	0	1	1831	5	28
29	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	215	236			718354	40500	5	136:Membrane Protein	15	0	1	1831	0	29
30	DeepTMHMM:outside		outside	233	239			794995	40500	10025	15	0	1	1831	0	30
31	PHOBIUS:NON_CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	236	255			718363	40500	3	136:Membrane Protein	15	0	1	1831	0	31
32	DeepTMHMM:TMhelix		TMhelix	240	260			794996	40500	2056	141:DeepTMHMM: helix	15	0	1	1831	5	32
33	PHOBIUS:TRANSMEMBRANE		Region of a membrane-bound protein predicted to be embedded in the membrane.	255	276			718350	40500	5	136:Membrane Protein	15	0	1	1831	0	33
34	DeepTMHMM:inside		inside	261	672			794997	40500	9730	15	0	1	1831	0	34
35	PHOBIUS:CYTOPLASMIC_DOMAIN		Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	276	672			718357	40500	18	136:Membrane Protein	15	0	1	1831	0	35
36	PROSITE_PROFILES:PS50112	IPR000014	PAS repeat profile.	336	393			718368	40500	281	15	0	1	1831	0	36
37	SUPERFAMILY:SSF55785	IPR035965	PAS domain superfamily	336	443			718378	40500	289	15	0	1	1831	0	37
38	CDD:cd00130	IPR000014	PAS	336	437			718374	40500	285	15	0	1	1831	0	38
39	PFAM:PF08447	IPR013655	PAS fold	345	433	73.9	9.8E-21	718217	40500	453	15	0	1	1831	0	39
40	PROSITE_PROFILES:PS50113	IPR000700	PAC domain profile.	396	449			718372	40500	280	15	0	1	1831	0	40
41	SMART:SM00086	IPR001610		397	440			718211	40500	1	15	0	1	1831	0	41
42	PROSITE_PROFILES:PS50109	IPR005467	Histidine kinase domain profile.	456	668			718370	40500	103	15	0	1	1831	0	42
43	PFAM:PF07568	IPR011495	Histidine kinase	456	532	111.2	1.9E-32	718221	40500	1640	15	0	1	1831	0	43
44	SUPERFAMILY:SSF55874	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	519	665			718376	40500	122	15	0	1	1831	0	44
45	SMART:SM00387	IPR003594		552	668			718213	40500	1	15	0	1	1831	0	45
46	PFAM:PF02518	IPR003594	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	555	663	36.2	6.9E-9	718215	40500	99	15	0	1	1831	0	46

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