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HCIAFFOI_02587 Locus tags: • Sequence Length: 427

Ruminococcus albus_7, DSM 20455 GCF_000179635.2

5050100100150150200200250250300300350350400400450450
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HCIAFFOI_02582 unknown unknown HCIAFFOI_02585 HCIAFFOI_02586 HCIAFFOI_02587dcm HCIAFFOI_02589 
    [PF13443]_[PF00145]

    [7:PF13443]_[73:PF00145]

    [6:IPR001387]_[6:IPR010982]_[7:IPR001387]_[8:IPR001387]_[72:IPR029063]_[73:IPR001525]_[73:IPR001525]_[74:IPR001525]_[183:IPR001525]_[229:IPR001525]

Looking for similar signatures in the working genomes

PF13443:HTH_26. Cro/C1-type HTH DNA-binding domain

Found 104 similar signatures
Clostridium acetobutylicum, DSM 1731 WP_010964868.1:FHOCHPCF_0160810-71
WP_010965253.1:FHOCHPCF_019969-65
WP_010965844.1:FHOCHPCF_025845-67
Acetivibrio alkalicellulosi, DSM 17461 2510059929:NJMEOJLD_001917-66
2510060875:NJMEOJLD_01112144-199
2510063314:NJMEOJLD_035004-65
Pseudobacteroides cellulosolvens, DSM 2933 WP_036941404.1:NEIHKHHH_016775-68
WP_036945562.1:NEIHKHHH_022377-64
WP_028308405.1:NEIHKHHH_030465-66
WP_036935386.1:NEIHKHHH_048797-60
WP_036943464.1:NEIHKHHH_051846-64
WP_036944902.1:NEIHKHHH_0556046-72
Ruminococcus albus_7, DSM 20455 WP_013498228.1:HCIAFFOI_016205-68
WP_013498270.1:HCIAFFOI_016655-67
WP_013498930.1:HCIAFFOI_023786-66
WP_013499125.1:HCIAFFOI_025877-67
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_111557:GJLLLGJL_015266-67
Paenibacillus guangzhouensis, KCTC 33171 WP_152392913.1:KDFAKKPF_014766-68
WP_152393155.1:KDFAKKPF_017526-66
WP_152396606.1:KDFAKKPF_058207-69
Clostridium acetobutylicum, ATCC 824 WP_010964868.1:OJAMHIDJ_0161310-71
WP_010965253.1:OJAMHIDJ_020049-65
WP_010965844.1:OJAMHIDJ_025945-67
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_058085662.1:PROKKA_031196-65
WP_012103012.1:PROKKA_032336-65
WP_137698656.1:PROKKA_036896-68
Syntrophomonas erecta, DSM 16215 OINOEOOJ_000396-66
OINOEOOJ_006736-66
OINOEOOJ_008066-67
OINOEOOJ_016826-67
FD_25_22, AnGL7 AnGL7_002213-62
AnGL7_023384-66
FD_25_27, AnGL8 AnGL8_0057018-74
FD_YE_25_21, AnGL21 AnGL21_041704-67
AnGL21_0149818-73
FD_YE_37_8_2, AnGL3 AnGL3_030307-68
FD_YE_37_9_2, AnGL4 AnGL4_019016-69
AnGL4_025376-66
AnGL4_026036-58
Syntrophomonas curvata, Scurva Scurva_003546-67
Scurva_004055-66
Scurva_009246-67
Syntrophomonas erecta sporosyntropha, Sespor Sespor_002076-67
Sespor_009626-66
Sespor_012604-67
Sespor_016496-66
Sespor_019556-67
Syntrophomonas wolfei methylbutyratica, Swm Swm_018105-68
Swm_019496-66
Terrisporobacter hibernicus, AnGL54 AnGL54_010335-68
AnGL54_024395-68
AnGL54_024836-63
Paraclostridium benzoelyticum, AnGL27 AnGL27_036609-70
AnGL27_003595-68
FD-YE-37-9-3, AnGL29 AnGL29_026266-69
AnGL29_032626-66
AnGL29_033286-58
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0194316-76
PaGL#35_030955-68
PaGL#35_048355-66
Syntrophomonas erecta, GB-438 Ga0610585_000396-66
Ga0610585_006736-66
Ga0610585_008066-67
Ga0610585_016826-67
Variovorax sp., EBFNA2 PaGL#33_0585510-70
Variovorax paradoxus, 2u118 PaGL#32_0506810-70
Dietzia cinnamea, 55 PaGL#56_001029-75
PaGL#56_0152610-78
PaGL#56_027835-68
Maridesulfovibrio salexigens, AnGL23 AnGL23_038755-67
Exiguobacterium mexicanum, AnGL24 AnGL24_029125-66
Clostridium subterminale, CB-LS10-1 AnGL53_008374-66
Priestia megaterium, 10L1 PaGL#57_015075-68
PaGL#57_040435-68
PaGL#57_0525412-65
Variovorax paradoxus, SPNA7 PaGL#43_0526410-70
Geodermatophilus sp., RDM14 PaGL#36_0316320-80
Fictibacillus phosphorivorans, TY7 PaGL#38_029664-67
PaGL#38_041105-66
Syntrophomonas wolfei, saponavida Swsap_018506-64
Swsap_023809-68
Swsap_028195-66
Swsap_029416-67
Bacillus subtilis, 30VD-1 PaGL#66_022435-66
Peribacillus frigoritolerans, 30N-5 PaGL#67_016825-66
PaGL#67_053045-66
PaGL#67_053316-65
Micromonospora inositola, Utrum1 PaGL#61_042655-67
Sphingomonas sp., CR2A3 PaGL#62_0191733-82
PaGL#62_028456-68
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_017615-68
AnGL54_032435-68
AnGL54_032876-63
Niallia taxi, AG-1 PaGL#37_041355-68
PaGL#37_050026-67
PaGL#37_016144-71
PaGL#37_016155-68
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_111557:Swol_015266-67
Syntrophomonas zehnderi, OL-4 Szehn Szehn_017126-65
Mucilaginibacter gossypii, cycad 4 PaGL#42_004025-65
Ruminococcus callidus, ATCC 27760 Rcal_0128466-124
Rcal_014246-64
Rcal_022657-68
Rcal_023169-57

PF00145:DNA_methylase. C-5 cytosine-specific DNA methylase

Found 81 similar signatures
Clostridium acetobutylicum, DSM 1731 WP_010964535.1:FHOCHPCF_012776-180
196-303
WP_010964810.1:FHOCHPCF_015505-66
101-410
Pseudobacteroides cellulosolvens, DSM 2933 WP_035269267.1:NEIHKHHH_030682-425
WP_152966068.1:NEIHKHHH_04375382-428
NEIHKHHH_043796-127
NEIHKHHH_055796-314
Ruminococcus albus_7, DSM 20455 WP_013497436.1:HCIAFFOI_007363-150
308-524
WP_013498069.1:HCIAFFOI_014391-411
WP_013499125.1:HCIAFFOI_0258773-399
Clostridium acetobutylicum, ATCC 824 WP_010964535.1:OJAMHIDJ_012806-180
196-303
WP_010964810.1:OJAMHIDJ_015545-66
101-410
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137699204.1:PROKKA_030965-194
479-565
WP_015926229.1:PROKKA_03235101-397
FD_25_22, AnGL7 AnGL7_0022892-506
FD_25_27, AnGL8 AnGL8_011777-347
FD_MS_7_1, AnGL28 AnGL28_002233-338
AnGL28_0320216-364
FD_SO4_25_1_F22, AnGL30 AnGL30_00224121-503
AnGL30_002256-391
AnGL30_0156395-415
FD_SO4_37_1, AnGL2 AnGL2_0233216-364
AnGL2_029023-338
FD_YE_25_21, AnGL21 AnGL21_006202-399
FD_YE_37_3, AnGL26 AnGL26_02351129-278
473-734
FD_YE_37_9_2, AnGL4 AnGL4_026043-332
Syntrophus buswellii, Sbus Sbus_023420-137
164-382
Syntrophomonas curvata, Scurva Scurva_0008172-476
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0021164-449
Syntrophomonas wolfei methylbutyratica, Swm Swm_024344-130
307-525
Sunxiuqinia elliptica, AnGL22 AnGL22_02348129-278
473-734
Paraclostridium benzoelyticum, AnGL27 AnGL27_03660117-440
FD-MS-7-8, AnGL9 AnGL9_010962-331
FD-YE-37-9-3, AnGL29 AnGL29_033293-332
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_050038-351
Variovorax paradoxus, 2u118 PaGL#32_0179914-133
184-236
Dietzia cinnamea, 55 PaGL#56_0042753-415
Priestia megaterium, 10L1 PaGL#57_003034-91
121-394
PaGL#57_003082-347
PaGL#57_0040880-402
PaGL#57_011122-429
Fictibacillus phosphorivorans, TY7 PaGL#38_0001161-391
PaGL#38_016282-399
PaGL#38_037309-396
Syntrophomonas wolfei, saponavida Swsap_000093-365
Swsap_022111-61
Micromonospora inositola, Utrum1 PaGL#61_0134513-159
197-418
Niallia taxi, AG-1 PaGL#37_053595-399
MPOB, Sfum 639702090:Sfum_0136822-359
639703571:Sfum_028741-342
639704618:Sfum_0394319-350
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_11314:Spalm_019020-328
Ruminococcus callidus, ATCC 27760 Rcal_012950-124
Rcal_014468-272
Rcal_0144712-61
Rcal_014486-80
422-554
832-880
Rcal_015256-485
Rcal_016855-193
459-503
Rcal_017696-194
460-504
Rcal_018476-486
Rcal_023033-333
Rcal_024083-169
280-362
Rcal_027731-190
237-290
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