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PaGL#33_03144 Locus tags: • Sequence Length: 333

Variovorax sp., EBFNA2 Batch2_genome_fasta/V.boronicumulans

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PaGL#33_03142 PaGL#33_03143 PaGL#33_03144 PaGL#33_03146 PaGL#33_03147 PaGL#33_03149 
    [PF01509]_[PF16198]_[PF09157]

    [34:PF01509]_[182:PF16198]_[244:PF09157]

    [11:IPR020103]_[14:IPR014780]_[34:IPR002501]_[182:IPR032819]_[244:IPR015240]

Looking for similar signatures in the working genomes

PF01509:TruB_N. TruB family pseudouridylate synthase (N terminal domain)

Found 63 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003515533.1:LOMAGDGF_0127222-170
Clostridium acetobutylicum, DSM 1731 WP_010965111.1:FHOCHPCF_0184922-170
Acetivibrio alkalicellulosi, DSM 17461 2510063825:NJMEOJLD_0400022-170
Pseudobacteroides cellulosolvens, DSM 2933 WP_036939591.1:NEIHKHHH_0017922-171
Ruminococcus albus_7, DSM 20455 WP_013499591.1:HCIAFFOI_0310627-177
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_0092424-175
Paenibacillus guangzhouensis, KCTC 33171 WP_152392514.1:KDFAKKPF_0102526-178
Clostridium acetobutylicum, ATCC 824 WP_010965111.1:OJAMHIDJ_0185722-170
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697898.1:PROKKA_0246722-186
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0103928-174
FD_25_22, AnGL7 AnGL7_0283531-179
FD_25_27, AnGL8 AnGL8_0164035-183
FD_MS_7_1, AnGL28 AnGL28_0121733-183
FD_SO4_25_1_F22, AnGL30 AnGL30_0108136-187
FD_SO4_37_1, AnGL2 AnGL2_0034733-183
FD_YE_25_21, AnGL21 AnGL21_0254033-181
FD_YE_37_3, AnGL26 AnGL26_0239642-188
FD_YE_37_8_2, AnGL3 AnGL3_0211352-198
FD_YE_37_9_2, AnGL4 AnGL4_0002524-175
Syntrophus buswellii, Sbus Sbus_0252622-170
Syntrophomonas curvata, Scurva Scurva_0130330-175
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0260928-174
Syntrophomonas wolfei methylbutyratica, Swm Swm_0101627-174
Terrisporobacter hibernicus, AnGL54 AnGL54_0199122-173
FD-25-21, AnGL21 AnGL21_0338831-179
Sunxiuqinia elliptica, AnGL22 AnGL22_0239342-188
Paraclostridium benzoelyticum, AnGL27 AnGL27_0156622-173
FD-MS-7-8, AnGL9 AnGL9_0159633-183
FD-YE-37-9-3, AnGL29 AnGL29_0075024-175
Methylobacterium radiotolerans, GTSA1 PaGL#34_0405165-213
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0635071-213
Syntrophomonas erecta, GB-438 Ga0610585_0103928-174
Variovorax sp., EBFNA2 PaGL#33_0314434-182
Variovorax paradoxus, 2u118 PaGL#32_0279034-186
Dietzia cinnamea, 55 PaGL#56_0175234-187
Maridesulfovibrio salexigens, AnGL23 AnGL23_0224333-182
Exiguobacterium mexicanum, AnGL24 AnGL24_0131224-180
Clostridium subterminale, CB-LS10-1 AnGL53_0116928-176
Priestia megaterium, 10L1 PaGL#57_0340122-178
Variovorax paradoxus, SPNA7 PaGL#43_0289634-186
Methanospirillum lacunae, Ki8-1 MLKi8_0046141-155
Geodermatophilus sp., RDM14 PaGL#36_0322041-194
Methylorubrum populi, CTY4 PaGL#39_0240369-217
Fictibacillus phosphorivorans, TY7 PaGL#38_0232525-181
Methanospirillum hungatei, GP1 MhGP1_0068136-150
Methanospirillum stamsii, Pt1 MLKi8_0093036-150
Syntrophomonas wolfei, saponavida Swsap_0009524-175
Bacillus subtilis, 30VD-1 PaGL#66_0246423-178
Peribacillus frigoritolerans, 30N-5 PaGL#67_0393422-178
Micromonospora inositola, Utrum1 PaGL#61_0176424-178
Sphingomonas sp., CR2A3 PaGL#62_0288631-175
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_0279422-173
Niallia taxi, AG-1 PaGL#37_0145422-178
Methanospirillum.hungatei GP1, MhGP1 8064048898:MhGP1_0222136-150
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_113258:Mhun_0325536-150
MPOB, Sfum 639702000:Sfum_0127753-202
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_0142127-133
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_0092424-175
Syntrophomonas zehnderi, OL-4 Szehn Szehn_0157723-175
Syntrophus aciditrophicus, SB 637861020:SYN_0252222-170
Syntrophus gentianae, DSM8423 Ga0074853_101151:Sgen_0015027-175
Mucilaginibacter gossypii, cycad 4 PaGL#42_0532343-185
Ruminococcus callidus, ATCC 27760 Rcal_0264227-178

PF16198:TruB_C_2. tRNA pseudouridylate synthase B C-terminal domain

Found 63 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003515533.1:LOMAGDGF_01272170-228
Clostridium acetobutylicum, DSM 1731 WP_010965111.1:FHOCHPCF_01849170-226
Acetivibrio alkalicellulosi, DSM 17461 2510063825:NJMEOJLD_04000170-229
Pseudobacteroides cellulosolvens, DSM 2933 WP_036939591.1:NEIHKHHH_00179171-230
Ruminococcus albus_7, DSM 20455 WP_013499591.1:HCIAFFOI_03106177-234
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_00924175-230
Paenibacillus guangzhouensis, KCTC 33171 WP_152392514.1:KDFAKKPF_01025178-237
Clostridium acetobutylicum, ATCC 824 WP_010965111.1:OJAMHIDJ_01857170-226
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697898.1:PROKKA_02467186-245
Syntrophomonas erecta, DSM 16215 OINOEOOJ_01039174-215
FD_25_22, AnGL7 AnGL7_02835179-248
FD_25_27, AnGL8 AnGL8_01640183-252
FD_MS_7_1, AnGL28 AnGL28_01217183-226
FD_SO4_25_1_F22, AnGL30 AnGL30_01081187-228
FD_SO4_37_1, AnGL2 AnGL2_00347183-226
FD_YE_25_21, AnGL21 AnGL21_02540181-250
FD_YE_37_3, AnGL26 AnGL26_02396188-228
FD_YE_37_8_2, AnGL3 AnGL3_02113198-239
FD_YE_37_9_2, AnGL4 AnGL4_00025175-234
Syntrophus buswellii, Sbus Sbus_02526170-212
Syntrophomonas curvata, Scurva Scurva_01303175-232
Syntrophomonas erecta sporosyntropha, Sespor Sespor_02609174-215
Syntrophomonas wolfei methylbutyratica, Swm Swm_01016174-231
Terrisporobacter hibernicus, AnGL54 AnGL54_01991173-232
FD-25-21, AnGL21 AnGL21_03388179-248
Sunxiuqinia elliptica, AnGL22 AnGL22_02393188-228
Paraclostridium benzoelyticum, AnGL27 AnGL27_01566173-232
FD-MS-7-8, AnGL9 AnGL9_01596183-239
FD-YE-37-9-3, AnGL29 AnGL29_00750175-234
Methylobacterium radiotolerans, GTSA1 PaGL#34_04051213-271
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_06350213-256
Syntrophomonas erecta, GB-438 Ga0610585_01039174-215
Variovorax sp., EBFNA2 PaGL#33_03144182-240
Variovorax paradoxus, 2u118 PaGL#32_02790186-244
Dietzia cinnamea, 55 PaGL#56_01752187-231
Maridesulfovibrio salexigens, AnGL23 AnGL23_02243182-236
Exiguobacterium mexicanum, AnGL24 AnGL24_01312180-238
Clostridium subterminale, CB-LS10-1 AnGL53_01169176-217
Priestia megaterium, 10L1 PaGL#57_03401178-237
Variovorax paradoxus, SPNA7 PaGL#43_02896186-244
Methanospirillum lacunae, Ki8-1 MLKi8_00461155-219
Geodermatophilus sp., RDM14 PaGL#36_03220194-232
Methylorubrum populi, CTY4 PaGL#39_02403217-265
Fictibacillus phosphorivorans, TY7 PaGL#38_02325181-237
Methanospirillum hungatei, GP1 MhGP1_00681150-214
Methanospirillum stamsii, Pt1 MLKi8_00930150-214
Syntrophomonas wolfei, saponavida Swsap_00095175-231
Bacillus subtilis, 30VD-1 PaGL#66_02464178-237
Peribacillus frigoritolerans, 30N-5 PaGL#67_03934178-236
Micromonospora inositola, Utrum1 PaGL#61_01764178-219
Sphingomonas sp., CR2A3 PaGL#62_02886175-232
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_02794173-232
Niallia taxi, AG-1 PaGL#37_01454178-237
Methanospirillum.hungatei GP1, MhGP1 8064048898:MhGP1_02221150-214
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_113258:Mhun_03255150-214
MPOB, Sfum 639702000:Sfum_01277202-257
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_0142016-73
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_00924175-230
Syntrophomonas zehnderi, OL-4 Szehn Szehn_01577175-232
Syntrophus aciditrophicus, SB 637861020:SYN_02522170-224
Syntrophus gentianae, DSM8423 Ga0074853_101151:Sgen_00150175-233
Mucilaginibacter gossypii, cycad 4 PaGL#42_05323185-228
Ruminococcus callidus, ATCC 27760 Rcal_02642178-237

PF09157:TruB-C_2. Pseudouridine synthase II TruB, C-terminal

Found 14 similar signatures
Ruminococcus albus_7, DSM 20455 WP_013499591.1:HCIAFFOI_03106239-290
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_00924235-295
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697898.1:PROKKA_02467249-300
Syntrophomonas erecta, DSM 16215 OINOEOOJ_01039234-296
FD_25_22, AnGL7 AnGL7_02835250-307
FD_25_27, AnGL8 AnGL8_01640254-312
FD_YE_25_21, AnGL21 AnGL21_02540252-310
Syntrophomonas curvata, Scurva Scurva_01303235-295
Syntrophomonas erecta sporosyntropha, Sespor Sespor_02609234-296
Syntrophomonas wolfei methylbutyratica, Swm Swm_01016234-294
FD-25-21, AnGL21 AnGL21_03388250-307
Syntrophomonas erecta, GB-438 Ga0610585_01039234-296
Variovorax sp., EBFNA2 PaGL#33_03144244-299
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_00924235-295
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