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MLKi8_00461 Locus tags: • Sequence Length: 349

Methanospirillum stamsii, Pt1 Batch4_genome_fasta/bc2029

5050100100150150200200250250300300350350
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MLKi8_00457 MLKi8_00460 MLKi8_00461 MLKi8_00462 MLKi8_00465 MLKi8_00466 
    [PF01509]_[PF04087]_[PF16198]_[PF01472]_[TM]

    [41:PF01509]_[63:PF04087]_[155:PF16198]_[223:PF01472]_[TM]

    [10:IPR012960]_[20:IPR020103]_[41:IPR002501]_[63:IPR005240]_[155:IPR032819]_[223:IPR002478]_[223:IPR002478]_[223:IPR015947]_[TM]

Looking for similar signatures in the working genomes

PF01509:TruB_N. TruB family pseudouridylate synthase (N terminal domain)

Found 63 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003515533.1:LOMAGDGF_0127222-170
Clostridium acetobutylicum, DSM 1731 WP_010965111.1:FHOCHPCF_0184922-170
Acetivibrio alkalicellulosi, DSM 17461 2510063825:NJMEOJLD_0400022-170
Pseudobacteroides cellulosolvens, DSM 2933 WP_036939591.1:NEIHKHHH_0017922-171
Ruminococcus albus_7, DSM 20455 WP_013499591.1:HCIAFFOI_0310627-177
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_0092424-175
Paenibacillus guangzhouensis, KCTC 33171 WP_152392514.1:KDFAKKPF_0102526-178
Clostridium acetobutylicum, ATCC 824 WP_010965111.1:OJAMHIDJ_0185722-170
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697898.1:PROKKA_0246722-186
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0103928-174
FD_25_22, AnGL7 AnGL7_0283531-179
FD_25_27, AnGL8 AnGL8_0164035-183
FD_MS_7_1, AnGL28 AnGL28_0121733-183
FD_SO4_25_1_F22, AnGL30 AnGL30_0108136-187
FD_SO4_37_1, AnGL2 AnGL2_0034733-183
FD_YE_25_21, AnGL21 AnGL21_0254033-181
FD_YE_37_3, AnGL26 AnGL26_0239642-188
FD_YE_37_8_2, AnGL3 AnGL3_0211352-198
FD_YE_37_9_2, AnGL4 AnGL4_0002524-175
Syntrophus buswellii, Sbus Sbus_0252622-170
Syntrophomonas curvata, Scurva Scurva_0130330-175
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0260928-174
Syntrophomonas wolfei methylbutyratica, Swm Swm_0101627-174
Terrisporobacter hibernicus, AnGL54 AnGL54_0199122-173
FD-25-21, AnGL21 AnGL21_0338831-179
Sunxiuqinia elliptica, AnGL22 AnGL22_0239342-188
Paraclostridium benzoelyticum, AnGL27 AnGL27_0156622-173
FD-MS-7-8, AnGL9 AnGL9_0159633-183
FD-YE-37-9-3, AnGL29 AnGL29_0075024-175
Methylobacterium radiotolerans, GTSA1 PaGL#34_0405165-213
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0635071-213
Syntrophomonas erecta, GB-438 Ga0610585_0103928-174
Variovorax sp., EBFNA2 PaGL#33_0314434-182
Variovorax paradoxus, 2u118 PaGL#32_0279034-186
Dietzia cinnamea, 55 PaGL#56_0175234-187
Maridesulfovibrio salexigens, AnGL23 AnGL23_0224333-182
Exiguobacterium mexicanum, AnGL24 AnGL24_0131224-180
Clostridium subterminale, CB-LS10-1 AnGL53_0116928-176
Priestia megaterium, 10L1 PaGL#57_0340122-178
Variovorax paradoxus, SPNA7 PaGL#43_0289634-186
Methanospirillum lacunae, Ki8-1 MLKi8_0046141-155
Geodermatophilus sp., RDM14 PaGL#36_0322041-194
Methylorubrum populi, CTY4 PaGL#39_0240369-217
Fictibacillus phosphorivorans, TY7 PaGL#38_0232525-181
Methanospirillum hungatei, GP1 MhGP1_0068136-150
Methanospirillum stamsii, Pt1 MLKi8_0093036-150
Syntrophomonas wolfei, saponavida Swsap_0009524-175
Bacillus subtilis, 30VD-1 PaGL#66_0246423-178
Peribacillus frigoritolerans, 30N-5 PaGL#67_0393422-178
Micromonospora inositola, Utrum1 PaGL#61_0176424-178
Sphingomonas sp., CR2A3 PaGL#62_0288631-175
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_0279422-173
Niallia taxi, AG-1 PaGL#37_0145422-178
Methanospirillum.hungatei GP1, MhGP1 8064048898:MhGP1_0222136-150
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_113258:Mhun_0325536-150
MPOB, Sfum 639702000:Sfum_0127753-202
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_0142127-133
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_0092424-175
Syntrophomonas zehnderi, OL-4 Szehn Szehn_0157723-175
Syntrophus aciditrophicus, SB 637861020:SYN_0252222-170
Syntrophus gentianae, DSM8423 Ga0074853_101151:Sgen_0015027-175
Mucilaginibacter gossypii, cycad 4 PaGL#42_0532343-185
Ruminococcus callidus, ATCC 27760 Rcal_0264227-178

PF04087:DUF389. Domain of unknown function (DUF389)

Found 18 similar signatures
FD_25_22, AnGL7 AnGL7_01968367-504
FD_SO4_25_1_F22, AnGL30 AnGL30_01049140-277
Syntrophus buswellii, Sbus Sbus_0037182-220
FD-25-21, AnGL21 AnGL21_00539367-504
Paraclostridium benzoelyticum, AnGL27 AnGL27_0265762-199
Maridesulfovibrio salexigens, AnGL23 AnGL23_0004066-202
AnGL23_00317155-293
Methanospirillum hungatei, GP1 MhGP1_0015463-203
Methanospirillum stamsii, Pt1 MLKi8_0046163-203
MLKi8_0287563-203
Micromonospora inositola, Utrum1 PaGL#61_02261144-289
Methanospirillum.hungatei GP1, MhGP1 8064049434:MhGP1_0274863-203
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_112705:Mhun_0270163-203
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_1183:Spalm_0231261-196
Syntrophomonas zehnderi, OL-4 Szehn Szehn_0006868-203
Syntrophus aciditrophicus, SB 637861156:SYN_0263469-207
Syntrophus gentianae, DSM8423 Ga0074853_104183:Sgen_0082069-207
Ruminococcus callidus, ATCC 27760 Rcal_0163874-212

PF16198:TruB_C_2. tRNA pseudouridylate synthase B C-terminal domain

Found 63 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003515533.1:LOMAGDGF_01272170-228
Clostridium acetobutylicum, DSM 1731 WP_010965111.1:FHOCHPCF_01849170-226
Acetivibrio alkalicellulosi, DSM 17461 2510063825:NJMEOJLD_04000170-229
Pseudobacteroides cellulosolvens, DSM 2933 WP_036939591.1:NEIHKHHH_00179171-230
Ruminococcus albus_7, DSM 20455 WP_013499591.1:HCIAFFOI_03106177-234
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_00924175-230
Paenibacillus guangzhouensis, KCTC 33171 WP_152392514.1:KDFAKKPF_01025178-237
Clostridium acetobutylicum, ATCC 824 WP_010965111.1:OJAMHIDJ_01857170-226
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697898.1:PROKKA_02467186-245
Syntrophomonas erecta, DSM 16215 OINOEOOJ_01039174-215
FD_25_22, AnGL7 AnGL7_02835179-248
FD_25_27, AnGL8 AnGL8_01640183-252
FD_MS_7_1, AnGL28 AnGL28_01217183-226
FD_SO4_25_1_F22, AnGL30 AnGL30_01081187-228
FD_SO4_37_1, AnGL2 AnGL2_00347183-226
FD_YE_25_21, AnGL21 AnGL21_02540181-250
FD_YE_37_3, AnGL26 AnGL26_02396188-228
FD_YE_37_8_2, AnGL3 AnGL3_02113198-239
FD_YE_37_9_2, AnGL4 AnGL4_00025175-234
Syntrophus buswellii, Sbus Sbus_02526170-212
Syntrophomonas curvata, Scurva Scurva_01303175-232
Syntrophomonas erecta sporosyntropha, Sespor Sespor_02609174-215
Syntrophomonas wolfei methylbutyratica, Swm Swm_01016174-231
Terrisporobacter hibernicus, AnGL54 AnGL54_01991173-232
FD-25-21, AnGL21 AnGL21_03388179-248
Sunxiuqinia elliptica, AnGL22 AnGL22_02393188-228
Paraclostridium benzoelyticum, AnGL27 AnGL27_01566173-232
FD-MS-7-8, AnGL9 AnGL9_01596183-239
FD-YE-37-9-3, AnGL29 AnGL29_00750175-234
Methylobacterium radiotolerans, GTSA1 PaGL#34_04051213-271
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_06350213-256
Syntrophomonas erecta, GB-438 Ga0610585_01039174-215
Variovorax sp., EBFNA2 PaGL#33_03144182-240
Variovorax paradoxus, 2u118 PaGL#32_02790186-244
Dietzia cinnamea, 55 PaGL#56_01752187-231
Maridesulfovibrio salexigens, AnGL23 AnGL23_02243182-236
Exiguobacterium mexicanum, AnGL24 AnGL24_01312180-238
Clostridium subterminale, CB-LS10-1 AnGL53_01169176-217
Priestia megaterium, 10L1 PaGL#57_03401178-237
Variovorax paradoxus, SPNA7 PaGL#43_02896186-244
Methanospirillum lacunae, Ki8-1 MLKi8_00461155-219
Geodermatophilus sp., RDM14 PaGL#36_03220194-232
Methylorubrum populi, CTY4 PaGL#39_02403217-265
Fictibacillus phosphorivorans, TY7 PaGL#38_02325181-237
Methanospirillum hungatei, GP1 MhGP1_00681150-214
Methanospirillum stamsii, Pt1 MLKi8_00930150-214
Syntrophomonas wolfei, saponavida Swsap_00095175-231
Bacillus subtilis, 30VD-1 PaGL#66_02464178-237
Peribacillus frigoritolerans, 30N-5 PaGL#67_03934178-236
Micromonospora inositola, Utrum1 PaGL#61_01764178-219
Sphingomonas sp., CR2A3 PaGL#62_02886175-232
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_02794173-232
Niallia taxi, AG-1 PaGL#37_01454178-237
Methanospirillum.hungatei GP1, MhGP1 8064048898:MhGP1_02221150-214
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_113258:Mhun_03255150-214
MPOB, Sfum 639702000:Sfum_01277202-257
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_0142016-73
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_00924175-230
Syntrophomonas zehnderi, OL-4 Szehn Szehn_01577175-232
Syntrophus aciditrophicus, SB 637861020:SYN_02522170-224
Syntrophus gentianae, DSM8423 Ga0074853_101151:Sgen_00150175-233
Mucilaginibacter gossypii, cycad 4 PaGL#42_05323185-228
Ruminococcus callidus, ATCC 27760 Rcal_02642178-237

PF01472:PUA. PUA domain

Found 69 similar signatures
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_111715:GJLLLGJL_01683282-357
Paenibacillus guangzhouensis, KCTC 33171 WP_152393888.1:KDFAKKPF_02602273-346
Syntrophomonas erecta, DSM 16215 OINOEOOJ_00278282-357
FD_25_22, AnGL7 AnGL7_03024277-352
FD_25_27, AnGL8 AnGL8_01709283-355
FD_MS_7_1, AnGL28 AnGL28_00423278-346
FD_SO4_25_1_F22, AnGL30 AnGL30_00248278-346
FD_SO4_37_1, AnGL2 AnGL2_03102278-346
FD_YE_25_21, AnGL21 AnGL21_00671284-359
FD_YE_37_3, AnGL26 AnGL26_00669279-340
FD_YE_37_8_2, AnGL3 AnGL3_01553276-335
Syntrophus buswellii, Sbus Sbus_02167285-358
Syntrophomonas curvata, Scurva Scurva_02184282-358
Syntrophomonas erecta sporosyntropha, Sespor Sespor_00727282-357
Syntrophomonas wolfei methylbutyratica, Swm Swm_01882282-357
FD-25-21, AnGL21 AnGL21_03205277-351
Sunxiuqinia elliptica, AnGL22 AnGL22_00670279-340
FD-MS-7-8, AnGL9 AnGL9_00369278-345
Methylobacterium radiotolerans, GTSA1 PaGL#34_00209280-352
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_03562276-342
Syntrophomonas erecta, GB-438 Ga0610585_00278282-357
Variovorax sp., EBFNA2 PaGL#33_01298285-360
Variovorax paradoxus, 2u118 PaGL#32_04302276-351
Dietzia cinnamea, 55 PaGL#56_01100282-344
Maridesulfovibrio salexigens, AnGL23 AnGL23_02396285-360
Priestia megaterium, 10L1 PaGL#57_05168280-341
Variovorax paradoxus, SPNA7 PaGL#43_04463285-360
Methanospirillum lacunae, Ki8-1 MLKi8_00461223-293
MLKi8_0050675-146
MLKi8_01186123-192
MLKi8_0140482-155
MLKi8_02565485-539
Geodermatophilus sp., RDM14 PaGL#36_01471279-349
Methylorubrum populi, CTY4 PaGL#39_02576303-374
Fictibacillus phosphorivorans, TY7 PaGL#38_00854282-353
Methanospirillum hungatei, GP1 MhGP1_00681218-287
MhGP1_0074474-147
MhGP1_0114581-151
MhGP1_01554124-194
MhGP1_02852486-540
Methanospirillum stamsii, Pt1 MLKi8_00930218-287
MLKi8_0104774-147
MLKi8_0144281-152
MLKi8_01902124-194
MLKi8_03421486-540
Syntrophomonas wolfei, saponavida Swsap_02016284-359
Bacillus subtilis, 30VD-1 PaGL#66_02273280-352
PaGL#66_02827276-347
Peribacillus frigoritolerans, 30N-5 PaGL#67_02488276-346
Micromonospora inositola, Utrum1 PaGL#61_06468277-346
Sphingomonas sp., CR2A3 PaGL#62_01282277-345
Niallia taxi, AG-1 PaGL#37_02178276-342
Methanospirillum.hungatei GP1, MhGP1 8064046675:MhGP1_00051486-540
8064048006:MhGP1_01348124-194
8064048423:MhGP1_0175781-151
8064048832:MhGP1_0215874-147
8064048898:MhGP1_02221218-287
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_11116:Mhun_00117124-194
Ga0065338_11628:Mhun_0062881-155
Ga0065338_112043:Mhun_02042486-540
Ga0065338_113258:Mhun_03255218-286
Ga0065338_113267:Mhun_0326474-147
MPOB, Sfum 639704415:Sfum_03732287-360
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_000841-42
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_111715:Swol_01683282-357
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_13115:Szehn_01842282-356
Syntrophus aciditrophicus, SB 637859020:SYN_00667284-358
Syntrophus gentianae, DSM8423 Ga0074853_12247:Sgen_02535283-358
Mucilaginibacter gossypii, cycad 4 PaGL#42_02176276-347
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