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PaGL#32_00685 Locus tags: • Sequence Length: 286

Variovorax paradoxus, 2u118 Batch2_genome_fasta/V.paradoxus

5050100100150150200200250250300300
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PaGL#32_00683 PaGL#32_06004 PaGL#32_00684 PaGL#32_06005 PaGL#32_06006 PaGL#32_00685 PaGL#32_06007 PaGL#32_00686 PaGL#32_06008 PaGL#32_00687 PaGL#32_00688 
    [PF01411]_[PF07973]

    [39:PF01411]_[219:PF07973]

    [21:IPR018165]_[24:IPR009000]_[39:IPR018164]_[124:IPR018163]_[219:IPR012947]_[219:IPR012947]

Looking for similar signatures in the working genomes

PF01411:tRNA-synt_2c. tRNA synthetases class II (A)

Found 78 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003516096.1:LOMAGDGF_007857-558
Clostridium acetobutylicum, DSM 1731 WP_010964224.1:FHOCHPCF_0095315-78
WP_010964985.1:FHOCHPCF_017227-558
Acetivibrio alkalicellulosi, DSM 17461 2510062216:NJMEOJLD_024168-558
Pseudobacteroides cellulosolvens, DSM 2933 WP_036944636.1:NEIHKHHH_035507-556
Ruminococcus albus_7, DSM 20455 WP_013497170.1:HCIAFFOI_0043917-87
WP_013498548.1:HCIAFFOI_019478-557
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_004795-557
Paenibacillus guangzhouensis, KCTC 33171 WP_152391772.1:KDFAKKPF_001784-552
Clostridium acetobutylicum, ATCC 824 WP_010964224.1:OJAMHIDJ_0095615-78
WP_010964985.1:OJAMHIDJ_017297-558
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137696838.1:PROKKA_028697-562
Syntrophomonas erecta, DSM 16215 OINOEOOJ_004755-557
FD_25_22, AnGL7 AnGL7_003386-547
FD_25_27, AnGL8 AnGL8_027976-555
FD_MS_7_1, AnGL28 AnGL28_034764-561
FD_SO4_25_1_F22, AnGL30 AnGL30_005215-553
FD_SO4_37_1, AnGL2 AnGL2_026064-561
FD_YE_25_21, AnGL21 AnGL21_026586-555
FD_YE_37_3, AnGL26 AnGL26_029015-540
FD_YE_37_8_2, AnGL3 AnGL3_026264-553
FD_YE_37_9_2, AnGL4 AnGL4_033547-555
Syntrophus buswellii, Sbus Sbus_005096-561
Syntrophomonas curvata, Scurva Scurva_009685-556
Syntrophomonas erecta sporosyntropha, Sespor Sespor_005295-557
Syntrophomonas wolfei methylbutyratica, Swm Swm_005055-557
Terrisporobacter hibernicus, AnGL54 AnGL54_020217-557
FD-25-21, AnGL21 AnGL21_022966-547
Sunxiuqinia elliptica, AnGL22 AnGL22_028985-540
Paraclostridium benzoelyticum, AnGL27 AnGL27_014397-559
FD-MS-7-8, AnGL9 AnGL9_007864-563
FD-YE-37-9-3, AnGL29 AnGL29_006127-555
Methylobacterium radiotolerans, GTSA1 PaGL#34_060535-554
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_051184-569
Syntrophomonas erecta, GB-438 Ga0610585_004755-557
Variovorax sp., EBFNA2 PaGL#33_0065815-103
PaGL#33_025809-555
Variovorax paradoxus, 2u118 PaGL#32_0068539-127
PaGL#32_032729-554
Dietzia cinnamea, 55 PaGL#56_016684-562
Maridesulfovibrio salexigens, AnGL23 AnGL23_000894-557
Exiguobacterium mexicanum, AnGL24 AnGL24_0107210-557
Clostridium subterminale, CB-LS10-1 AnGL53_0068920-104
AnGL53_010637-558
Priestia megaterium, 10L1 PaGL#57_029407-557
PaGL#57_0570413-89
Variovorax paradoxus, SPNA7 PaGL#43_0066739-127
PaGL#43_033239-554
Methanospirillum lacunae, Ki8-1 MLKi8_0162260-603
Geodermatophilus sp., RDM14 PaGL#36_020834-564
Methylorubrum populi, CTY4 PaGL#39_023015-555
Fictibacillus phosphorivorans, TY7 PaGL#38_0259218-76
PaGL#38_0272813-90
PaGL#38_033837-557
Methanospirillum hungatei, GP1 MhGP1_0165160-603
Methanospirillum stamsii, Pt1 MLKi8_0202560-603
Syntrophomonas wolfei, saponavida Swsap_005055-558
Bacillus subtilis, 30VD-1 PaGL#66_016047-557
Peribacillus frigoritolerans, 30N-5 PaGL#67_020977-557
Micromonospora inositola, Utrum1 PaGL#61_024594-570
PaGL#61_026635-390
PaGL#61_0661028-96
Sphingomonas sp., CR2A3 PaGL#62_010275-556
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_028247-557
Niallia taxi, AG-1 PaGL#37_0452712-88
PaGL#37_0188617-87
PaGL#37_027917-556
Methanospirillum.hungatei GP1, MhGP1 8064047903:MhGP1_0125260-603
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_11870:Mhun_0086960-603
MPOB, Sfum 639703291:Sfum_026014-564
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_016705-557
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_004795-557
Syntrophomonas zehnderi, OL-4 Szehn Szehn_006685-557
Syntrophus aciditrophicus, SB 637858648:SYN_003166-561
Syntrophus gentianae, DSM8423 Ga0074853_10234:Sgen_002456-561
Mucilaginibacter gossypii, cycad 4 PaGL#42_008294-275
328-593
Ruminococcus callidus, ATCC 27760 Rcal_010557-556

PF07973:tRNA_SAD. Threonyl and Alanyl tRNA synthetase second additional domain

Found 148 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003516096.1:LOMAGDGF_00785654-698
WP_003519104.1:LOMAGDGF_01065168-218
Clostridium acetobutylicum, DSM 1731 WP_010964224.1:FHOCHPCF_00953179-222
WP_010964985.1:FHOCHPCF_01722656-700
WP_010965659.1:FHOCHPCF_02394168-218
Acetivibrio alkalicellulosi, DSM 17461 2510062150:NJMEOJLD_02351168-218
2510062216:NJMEOJLD_02416654-698
Pseudobacteroides cellulosolvens, DSM 2933 WP_036947298.1:NEIHKHHH_02247168-218
WP_036944636.1:NEIHKHHH_03550654-698
Ruminococcus albus_7, DSM 20455 WP_013497170.1:HCIAFFOI_00439178-219
WP_013498548.1:HCIAFFOI_01947655-703
WP_013499616.1:HCIAFFOI_03131170-219
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_00479655-699
Ga0065332_111140:GJLLLGJL_01117169-218
Paenibacillus guangzhouensis, KCTC 33171 WP_152391772.1:KDFAKKPF_00178650-694
WP_152393564.1:KDFAKKPF_02238171-221
WP_152394745.1:KDFAKKPF_03598172-221
Clostridium acetobutylicum, ATCC 824 WP_010964224.1:OJAMHIDJ_00956179-222
WP_010964985.1:OJAMHIDJ_01729656-700
WP_010965659.1:OJAMHIDJ_02404168-218
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137698334.1:PROKKA_02616168-218
WP_137696838.1:PROKKA_02869658-702
Syntrophomonas erecta, DSM 16215 OINOEOOJ_00475654-698
OINOEOOJ_00509169-218
FD_25_22, AnGL7 AnGL7_00338643-687
AnGL7_01649170-218
FD_25_27, AnGL8 AnGL8_00655171-219
AnGL8_02797651-695
FD_MS_7_1, AnGL28 AnGL28_02592102-152
AnGL28_03476660-704
FD_SO4_25_1_F22, AnGL30 AnGL30_00521652-695
AnGL30_01650169-218
FD_SO4_37_1, AnGL2 AnGL2_01721102-152
AnGL2_02606660-704
FD_YE_25_21, AnGL21 AnGL21_01246171-219
AnGL21_02658651-695
FD_YE_37_3, AnGL26 AnGL26_02901652-695
AnGL26_03319169-219
FD_YE_37_8_2, AnGL3 AnGL3_02626652-695
AnGL3_03288106-138
AnGL3_03306166-216
FD_YE_37_9_2, AnGL4 AnGL4_00265167-217
AnGL4_03354652-696
Syntrophus buswellii, Sbus Sbus_00509659-703
Sbus_00607171-221
Syntrophomonas curvata, Scurva Scurva_00968653-697
Scurva_01816168-218
Syntrophomonas erecta sporosyntropha, Sespor Sespor_00495169-218
Sespor_00529654-698
Syntrophomonas wolfei methylbutyratica, Swm Swm_00505655-699
Swm_01273169-218
Terrisporobacter hibernicus, AnGL54 AnGL54_04477179-222
AnGL54_02021654-698
AnGL54_02900168-218
FD-25-21, AnGL21 AnGL21_00931170-218
AnGL21_02296643-687
Sunxiuqinia elliptica, AnGL22 AnGL22_02898652-695
AnGL22_03315169-219
Paraclostridium benzoelyticum, AnGL27 AnGL27_01439656-700
AnGL27_01883179-213
AnGL27_03470168-218
FD-MS-7-8, AnGL9 AnGL9_00786662-706
AnGL9_01203102-152
FD-YE-37-9-3, AnGL29 AnGL29_00612652-696
AnGL29_00990167-217
Methylobacterium radiotolerans, GTSA1 PaGL#34_02161169-219
PaGL#34_06053652-709
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_03717168-218
PaGL#35_05118680-725
Syntrophomonas erecta, GB-438 Ga0610585_00475654-698
Ga0610585_00509169-218
Variovorax sp., EBFNA2 PaGL#33_00658195-248
PaGL#33_02580652-695
PaGL#33_04025172-218
Variovorax paradoxus, 2u118 PaGL#32_00685219-268
PaGL#32_01924172-218
PaGL#32_03272652-695
Dietzia cinnamea, 55 PaGL#56_01668659-704
PaGL#56_01694211-258
Maridesulfovibrio salexigens, AnGL23 AnGL23_00089657-701
AnGL23_01880165-215
AnGL23_0192996-130
Exiguobacterium mexicanum, AnGL24 AnGL24_00591171-212
AnGL24_01072656-699
AnGL24_01967172-221
Clostridium subterminale, CB-LS10-1 AnGL53_00689196-239
AnGL53_01063656-700
AnGL53_02038197-247
AnGL53_03186168-218
Priestia megaterium, 10L1 PaGL#57_02799173-223
PaGL#57_02940654-698
PaGL#57_05192180-221
PaGL#57_05704189-233
Variovorax paradoxus, SPNA7 PaGL#43_00667219-268
PaGL#43_01842172-218
PaGL#43_03323652-695
Methanospirillum lacunae, Ki8-1 MLKi8_01622701-744
Geodermatophilus sp., RDM14 PaGL#36_02033195-241
PaGL#36_02083661-706
PaGL#36_03053191-234
Methylorubrum populi, CTY4 PaGL#39_02059169-219
PaGL#39_02301652-711
Fictibacillus phosphorivorans, TY7 PaGL#38_02592179-222
PaGL#38_02728188-232
PaGL#38_03383654-698
PaGL#38_03517169-219
Methanospirillum hungatei, GP1 MhGP1_01651701-744
Methanospirillum stamsii, Pt1 MLKi8_02025701-744
Syntrophomonas wolfei, saponavida Swsap_00505656-700
Swsap_02338168-218
Bacillus subtilis, 30VD-1 PaGL#66_00546171-221
PaGL#66_01445171-221
PaGL#66_01604654-698
Peribacillus frigoritolerans, 30N-5 PaGL#67_01569208-257
PaGL#67_01880171-221
PaGL#67_02097654-698
PaGL#67_02800181-224
Micromonospora inositola, Utrum1 PaGL#61_02385196-239
PaGL#61_02459668-712
PaGL#61_06610196-239
Sphingomonas sp., CR2A3 PaGL#62_01027652-701
PaGL#62_03325171-226
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_01307179-222
AnGL54_02824654-698
AnGL54_03703168-218
Niallia taxi, AG-1 PaGL#37_04527189-232
PaGL#37_01109172-222
PaGL#37_01886180-220
PaGL#37_02791654-698
PaGL#37_02946171-221
Methanospirillum.hungatei GP1, MhGP1 8064047903:MhGP1_01252701-744
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_11870:Mhun_00869701-744
MPOB, Sfum 639701180:Sfum_00437168-218
639703291:Sfum_02601662-706
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_11920:Spalm_02404168-218
Spalm_01670653-697
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_00479655-699
Ga0065332_111140:Swol_01117169-218
Syntrophomonas zehnderi, OL-4 Szehn Szehn_00668654-698
Ga0124040_126135:Szehn_01369168-218
Syntrophus aciditrophicus, SB 637858648:SYN_00316659-703
637858964:SYN_00615171-221
Syntrophus gentianae, DSM8423 Ga0074853_10234:Sgen_00245659-703
Ga0074853_10947:Sgen_01475171-221
Mucilaginibacter gossypii, cycad 4 PaGL#42_00829706-751
PaGL#42_01770168-218
Ruminococcus callidus, ATCC 27760 Rcal_00274169-219
Rcal_01055653-697
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