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Swsap_00448 Locus tags: • Sequence Length: 298

Syntrophomonas wolfei, saponavida Batch4_genome_fasta/bc2031

5050100100150150200200250250300300
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Swsap_00444 Swsap_00446 Swsap_00448 Swsap_00450 Swsap_00451 Swsap_00452 Swsap_00453 
    [PF08501]_[PF18317]

    [11:PF08501]_[249:PF18317]

    [1:IPR046346]_[11:IPR013708]_[106:IPR036291]_[249:IPR041121]

Looking for similar signatures in the working genomes

PF08501:Shikimate_dh_N. Shikimate dehydrogenase substrate binding domain

Found 79 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003517153.1:LOMAGDGF_0141315-98
Clostridium acetobutylicum, DSM 1731 FHOCHPCF_00944102-185
Acetivibrio alkalicellulosi, DSM 17461 2510061626:NJMEOJLD_0184315-98
Pseudobacteroides cellulosolvens, DSM 2933 WP_242853069.1:NEIHKHHH_0199913-96
Ruminococcus albus_7, DSM 20455 WP_037305241.1:HCIAFFOI_0001923-104
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_0053511-94
Paenibacillus guangzhouensis, KCTC 33171 WP_152392105.1:KDFAKKPF_0054317-100
Clostridium acetobutylicum, ATCC 824 OJAMHIDJ_00947102-185
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137695945.1:PROKKA_0210415-98
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0138112-95
FD_25_22, AnGL7 AnGL7_0004025-93
AnGL7_000855-88
FD_25_27, AnGL8 AnGL8_012645-88
FD_MS_7_1, AnGL28 AnGL28_0068211-94
FD_SO4_25_1_F22, AnGL30 AnGL30_001726-89
FD_SO4_37_1, AnGL2 AnGL2_0336111-94
FD_YE_25_21, AnGL21 AnGL21_031019-92
FD_YE_37_3, AnGL26 AnGL26_038595-88
FD_YE_37_8_2, AnGL3 AnGL3_002955-87
FD_YE_37_9_2, AnGL4 AnGL4_0010016-99
Syntrophus buswellii, Sbus Sbus_0119012-93
Syntrophomonas curvata, Scurva Scurva_0098711-94
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0225712-95
Syntrophomonas wolfei methylbutyratica, Swm Swm_0056811-94
Terrisporobacter hibernicus, AnGL54 AnGL54_0208711-94
FD-25-21, AnGL21 AnGL21_025355-88
AnGL21_0258025-93
Sunxiuqinia elliptica, AnGL22 AnGL22_038555-88
Paraclostridium benzoelyticum, AnGL27 AnGL27_0317411-94
FD-MS-7-8, AnGL9 AnGL9_0099511-94
FD-YE-37-9-3, AnGL29 AnGL29_0082516-99
Methylobacterium radiotolerans, GTSA1 PaGL#34_0056818-102
PaGL#34_047309-92
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_000775-88
Syntrophomonas erecta, GB-438 Ga0610585_0138112-95
Variovorax sp., EBFNA2 PaGL#33_008565-94
PaGL#33_0235515-97
PaGL#33_0235611-94
Variovorax paradoxus, 2u118 PaGL#32_008745-94
PaGL#32_0638514-97
PaGL#32_0343112-94
PaGL#32_0343515-97
Dietzia cinnamea, 55 PaGL#56_0166516-99
Maridesulfovibrio salexigens, AnGL23 AnGL23_0326911-94
Exiguobacterium mexicanum, AnGL24 AnGL24_008764-87
Clostridium subterminale, CB-LS10-1 AnGL53_007095-88
Priestia megaterium, 10L1 PaGL#57_029666-89
PaGL#57_0645815-98
Variovorax paradoxus, SPNA7 PaGL#43_0633214-97
PaGL#43_008655-94
PaGL#43_0346912-94
PaGL#43_0347315-97
PaGL#43_049556-88
Methanospirillum lacunae, Ki8-1 MLKi8_02329212-293
Geodermatophilus sp., RDM14 PaGL#36_020864-87
PaGL#36_0266311-99
Methylorubrum populi, CTY4 PaGL#39_013386-89
Fictibacillus phosphorivorans, TY7 PaGL#38_031475-88
Methanospirillum hungatei, GP1 MhGP1_02205209-290
Methanospirillum stamsii, Pt1 MLKi8_02828209-290
Syntrophomonas wolfei, saponavida Swsap_0044811-94
Bacillus subtilis, 30VD-1 PaGL#66_017236-89
Peribacillus frigoritolerans, 30N-5 PaGL#67_021276-89
PaGL#67_0522915-98
Micromonospora inositola, Utrum1 PaGL#61_024624-87
Sphingomonas sp., CR2A3 PaGL#62_0266110-94
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_0289011-94
Niallia taxi, AG-1 PaGL#37_0417817-100
PaGL#37_027585-88
Methanospirillum.hungatei GP1, MhGP1 8064047341:MhGP1_00698209-290
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_111945:Mhun_01946209-290
MPOB, Sfum 639703492:Sfum_0279711-92
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_10254:Spalm_0033611-94
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_0053511-94
Syntrophomonas zehnderi, OL-4 Szehn Szehn_0125410-93
Syntrophus aciditrophicus, SB 637860157:SYN_0173126-107
Syntrophus gentianae, DSM8423 Ga0074853_105127:Sgen_0094726-107
Mucilaginibacter gossypii, cycad 4 PaGL#42_042755-88
Ruminococcus callidus, ATCC 27760 Rcal_002135-86

PF18317:SDH_C. Shikimate 5'-dehydrogenase C-terminal domain

Found 45 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003517153.1:LOMAGDGF_01413255-275
Acetivibrio alkalicellulosi, DSM 17461 2510061626:NJMEOJLD_01843254-277
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_00535249-280
Paenibacillus guangzhouensis, KCTC 33171 WP_152392105.1:KDFAKKPF_00543252-283
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137695945.1:PROKKA_02104255-279
Syntrophomonas erecta, DSM 16215 OINOEOOJ_01381250-281
FD_25_22, AnGL7 AnGL7_00085236-267
FD_25_27, AnGL8 AnGL8_01264237-268
FD_MS_7_1, AnGL28 AnGL28_00682249-280
FD_SO4_37_1, AnGL2 AnGL2_03361249-280
FD_YE_25_21, AnGL21 AnGL21_03101240-271
Syntrophus buswellii, Sbus Sbus_01190236-267
Syntrophomonas curvata, Scurva Scurva_00987249-280
Syntrophomonas erecta sporosyntropha, Sespor Sespor_02257250-281
Syntrophomonas wolfei methylbutyratica, Swm Swm_00568249-280
FD-25-21, AnGL21 AnGL21_02535236-267
FD-MS-7-8, AnGL9 AnGL9_00995249-280
Syntrophomonas erecta, GB-438 Ga0610585_01381250-281
Variovorax sp., EBFNA2 PaGL#33_00856247-278
Variovorax paradoxus, 2u118 PaGL#32_00874247-278
Dietzia cinnamea, 55 PaGL#56_01665249-276
Maridesulfovibrio salexigens, AnGL23 AnGL23_03269238-269
Exiguobacterium mexicanum, AnGL24 AnGL24_00876225-250
Priestia megaterium, 10L1 PaGL#57_02966242-273
PaGL#57_06458261-291
Variovorax paradoxus, SPNA7 PaGL#43_00865247-278
PaGL#43_04955238-264
Geodermatophilus sp., RDM14 PaGL#36_02086241-271
PaGL#36_02663252-280
Fictibacillus phosphorivorans, TY7 PaGL#38_03147239-269
Methanospirillum hungatei, GP1 MhGP1_02205429-457
Syntrophomonas wolfei, saponavida Swsap_00448249-278
Bacillus subtilis, 30VD-1 PaGL#66_01723241-270
Peribacillus frigoritolerans, 30N-5 PaGL#67_02127241-272
PaGL#67_05229261-291
Micromonospora inositola, Utrum1 PaGL#61_02462234-264
Sphingomonas sp., CR2A3 PaGL#62_02661238-263
Niallia taxi, AG-1 PaGL#37_04178264-294
PaGL#37_02758239-270
Methanospirillum.hungatei GP1, MhGP1 8064047341:MhGP1_00698429-457
MPOB, Sfum 639703492:Sfum_02797239-273
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_00535249-280
Syntrophomonas zehnderi, OL-4 Szehn Szehn_01254248-278
Syntrophus aciditrophicus, SB 637860157:SYN_01731250-281
Syntrophus gentianae, DSM8423 Ga0074853_105127:Sgen_00947250-281
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