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Spalm_01665 Locus tags: • Sequence Length: 354

Syntrophomonas palmitatica, JCM14374 Spalm Gs0110775

5050100100150150200200250250300300350350400400
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Spalm_01528 Spalm_01393 Spalm_01121 Spalm_00981 Spalm_00403 Spalm_01665 Spalm_01529 Spalm_01122 Spalm_00804 Spalm_01261 Spalm_01889 
    [SP]_[PF03054]_[PF20259]_[PF20258]_[TM]

    [SP]_[1:PF03054]_[191:PF20259]_[262:PF20258]_[TM]

    [SP]_[1:IPR004506]_[191:IPR046884]_[262:IPR046885]_[TM]

Looking for similar signatures in the working genomes

PF03054:tRNA_Me_trans. tRNA methyl transferase HUP domain

Found 71 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003516239.1:LOMAGDGF_015483-206
Clostridium acetobutylicum, DSM 1731 WP_010965531.1:FHOCHPCF_022712-202
WP_010965987.1:FHOCHPCF_02751215-249
Acetivibrio alkalicellulosi, DSM 17461 2510061597:NJMEOJLD_018163-206
2510062171:NJMEOJLD_02372215-249
Pseudobacteroides cellulosolvens, DSM 2933 WP_036942265.1:NEIHKHHH_015263-206
Ruminococcus albus_7, DSM 20455 WP_013498374.1:HCIAFFOI_017703-204
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_004750-188
GJLLLGJL_011971-101
Paenibacillus guangzhouensis, KCTC 33171 WP_152391767.1:KDFAKKPF_001728-204
Clostridium acetobutylicum, ATCC 824 WP_010965531.1:OJAMHIDJ_022802-202
WP_010965987.1:OJAMHIDJ_02759215-249
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137695819.1:PROKKA_022493-206
Syntrophomonas erecta, DSM 16215 OINOEOOJ_004700-188
FD_25_22, AnGL7 AnGL7_007857-204
FD_25_27, AnGL8 AnGL8_008752-193
FD_MS_7_1, AnGL28 AnGL28_0189011-205
FD_SO4_25_1_F22, AnGL30 AnGL30_006645-196
AnGL30_0102510-200
FD_SO4_37_1, AnGL2 AnGL2_0101911-205
FD_YE_25_21, AnGL21 AnGL21_018936-206
FD_YE_37_3, AnGL26 AnGL26_037571-204
FD_YE_37_8_2, AnGL3 AnGL3_032875-208
FD_YE_37_9_2, AnGL4 AnGL4_032162-204
Syntrophus buswellii, Sbus Sbus_0174235-232
Syntrophomonas curvata, Scurva Scurva_009630-188
Syntrophomonas erecta sporosyntropha, Sespor Sespor_005340-188
Syntrophomonas wolfei methylbutyratica, Swm Swm_0050023-210
Swm_013561-101
Terrisporobacter hibernicus, AnGL54 AnGL54_020221-201
FD-25-21, AnGL21 AnGL21_018157-204
Sunxiuqinia elliptica, AnGL22 AnGL22_037531-204
Paraclostridium benzoelyticum, AnGL27 AnGL27_014382-205
FD-MS-7-8, AnGL9 AnGL9_023200-189
FD-YE-37-9-3, AnGL29 AnGL29_004742-204
Methylobacterium radiotolerans, GTSA1 PaGL#34_0557313-212
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_035525-207
Syntrophomonas erecta, GB-438 Ga0610585_004700-188
Variovorax sp., EBFNA2 PaGL#33_0043515-214
Variovorax paradoxus, 2u118 PaGL#32_004253-202
Dietzia cinnamea, 55 PaGL#56_018720-205
Maridesulfovibrio salexigens, AnGL23 AnGL23_0165217-207
Exiguobacterium mexicanum, AnGL24 AnGL24_0106511-207
Clostridium subterminale, CB-LS10-1 AnGL53_00507214-248
AnGL53_010592-202
Priestia megaterium, 10L1 PaGL#57_029348-204
Variovorax paradoxus, SPNA7 PaGL#43_003983-202
Geodermatophilus sp., RDM14 PaGL#36_033620-196
Methylorubrum populi, CTY4 PaGL#39_0396923-222
Fictibacillus phosphorivorans, TY7 PaGL#38_0338913-209
Syntrophomonas wolfei, saponavida Swsap_005103-188
Swsap_027063-202
Bacillus subtilis, 30VD-1 PaGL#66_015938-204
Peribacillus frigoritolerans, 30N-5 PaGL#67_020898-204
Micromonospora inositola, Utrum1 PaGL#61_015470-197
Sphingomonas sp., CR2A3 PaGL#62_0283015-213
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_028252-206
Niallia taxi, AG-1 PaGL#37_027968-204
MPOB, Sfum 639700922:Sfum_001800-196
639702890:Sfum_02183222-256
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_11112:Spalm_01697162-245
Spalm_016651-188
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_004750-188
Swol_011971-101
Syntrophomonas zehnderi, OL-4 Szehn Szehn_020452-201
Ga0124040_14725:Szehn_024914-199
Syntrophus aciditrophicus, SB 637860641:SYN_0218615-163
637860835:SYN_0235316-213
Syntrophus gentianae, DSM8423 Sgen_017922-199
Mucilaginibacter gossypii, cycad 4 PaGL#42_021785-207
Ruminococcus callidus, ATCC 27760 Rcal_005592-203

PF20259:tRNA_Me_trans_M. tRNA methyl transferase PRC-barrel domain

Found 62 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003516239.1:LOMAGDGF_01548211-275
Clostridium acetobutylicum, DSM 1731 WP_010965531.1:FHOCHPCF_02271208-271
Acetivibrio alkalicellulosi, DSM 17461 2510061597:NJMEOJLD_01816211-275
Pseudobacteroides cellulosolvens, DSM 2933 WP_036942265.1:NEIHKHHH_01526212-275
Ruminococcus albus_7, DSM 20455 WP_013498374.1:HCIAFFOI_01770209-272
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_00475192-254
Paenibacillus guangzhouensis, KCTC 33171 WP_152391767.1:KDFAKKPF_00172207-275
Clostridium acetobutylicum, ATCC 824 WP_010965531.1:OJAMHIDJ_02280208-271
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137695819.1:PROKKA_02249211-275
Syntrophomonas erecta, DSM 16215 OINOEOOJ_00470192-253
FD_25_22, AnGL7 AnGL7_00785208-276
FD_25_27, AnGL8 AnGL8_00875209-263
FD_MS_7_1, AnGL28 AnGL28_01890210-273
FD_SO4_25_1_F22, AnGL30 AnGL30_00664215-268
AnGL30_01025204-268
FD_SO4_37_1, AnGL2 AnGL2_01019210-273
FD_YE_25_21, AnGL21 AnGL21_01893210-278
FD_YE_37_3, AnGL26 AnGL26_03757255-302
FD_YE_37_8_2, AnGL3 AnGL3_03287264-310
FD_YE_37_9_2, AnGL4 AnGL4_03216209-273
Syntrophus buswellii, Sbus Sbus_01742238-300
Syntrophomonas curvata, Scurva Scurva_00963191-252
Syntrophomonas erecta sporosyntropha, Sespor Sespor_00534192-253
Syntrophomonas wolfei methylbutyratica, Swm Swm_00500214-276
Terrisporobacter hibernicus, AnGL54 AnGL54_02022206-270
FD-25-21, AnGL21 AnGL21_01815208-276
Sunxiuqinia elliptica, AnGL22 AnGL22_03753255-302
Paraclostridium benzoelyticum, AnGL27 AnGL27_01438211-274
FD-MS-7-8, AnGL9 AnGL9_02320195-257
FD-YE-37-9-3, AnGL29 AnGL29_00474209-273
Methylobacterium radiotolerans, GTSA1 PaGL#34_05573224-281
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_03552227-279
Syntrophomonas erecta, GB-438 Ga0610585_00470192-253
Variovorax sp., EBFNA2 PaGL#33_00435217-293
Variovorax paradoxus, 2u118 PaGL#32_00425205-281
Dietzia cinnamea, 55 PaGL#56_01872210-277
Maridesulfovibrio salexigens, AnGL23 AnGL23_01652220-276
Exiguobacterium mexicanum, AnGL24 AnGL24_01065210-275
Clostridium subterminale, CB-LS10-1 AnGL53_01059214-271
Priestia megaterium, 10L1 PaGL#57_02934207-270
Variovorax paradoxus, SPNA7 PaGL#43_00398205-281
Geodermatophilus sp., RDM14 PaGL#36_03362201-266
Methylorubrum populi, CTY4 PaGL#39_03969229-291
Fictibacillus phosphorivorans, TY7 PaGL#38_03389212-275
Syntrophomonas wolfei, saponavida Swsap_00510191-253
Swsap_02706206-271
Bacillus subtilis, 30VD-1 PaGL#66_01593207-270
Peribacillus frigoritolerans, 30N-5 PaGL#67_02089207-272
Micromonospora inositola, Utrum1 PaGL#61_01547202-269
Sphingomonas sp., CR2A3 PaGL#62_02830228-283
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_02825211-275
Niallia taxi, AG-1 PaGL#37_02796207-272
MPOB, Sfum 639700922:Sfum_00180211-268
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_01665191-252
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_00475192-254
Syntrophomonas zehnderi, OL-4 Szehn Szehn_02045206-270
Ga0124040_14725:Szehn_02491205-269
Syntrophus aciditrophicus, SB 637860641:SYN_02186167-234
637860835:SYN_02353218-281
Syntrophus gentianae, DSM8423 Sgen_01792211-267
Mucilaginibacter gossypii, cycad 4 PaGL#42_02178227-279
Ruminococcus callidus, ATCC 27760 Rcal_00559209-272

PF20258:tRNA_Me_trans_C. Aminomethyltransferase beta-barrel domain

Found 62 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003516239.1:LOMAGDGF_01548281-358
Clostridium acetobutylicum, DSM 1731 WP_010965531.1:FHOCHPCF_02271292-354
Acetivibrio alkalicellulosi, DSM 17461 2510061597:NJMEOJLD_01816281-358
Pseudobacteroides cellulosolvens, DSM 2933 WP_036942265.1:NEIHKHHH_01526281-358
Ruminococcus albus_7, DSM 20455 WP_013498374.1:HCIAFFOI_01770279-355
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_00475261-337
Paenibacillus guangzhouensis, KCTC 33171 WP_152391767.1:KDFAKKPF_00172283-363
Clostridium acetobutylicum, ATCC 824 WP_010965531.1:OJAMHIDJ_02280292-354
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137695819.1:PROKKA_02249282-358
Syntrophomonas erecta, DSM 16215 OINOEOOJ_00470261-336
FD_25_22, AnGL7 AnGL7_00785286-361
FD_25_27, AnGL8 AnGL8_00875270-344
FD_MS_7_1, AnGL28 AnGL28_01890281-357
FD_SO4_25_1_F22, AnGL30 AnGL30_00664287-350
AnGL30_01025295-352
FD_SO4_37_1, AnGL2 AnGL2_01019281-357
FD_YE_25_21, AnGL21 AnGL21_01893289-365
FD_YE_37_3, AnGL26 AnGL26_03757317-391
FD_YE_37_8_2, AnGL3 AnGL3_03287323-401
FD_YE_37_9_2, AnGL4 AnGL4_03216281-356
Syntrophus buswellii, Sbus Sbus_01742308-379
Syntrophomonas curvata, Scurva Scurva_00963262-336
Syntrophomonas erecta sporosyntropha, Sespor Sespor_00534261-336
Syntrophomonas wolfei methylbutyratica, Swm Swm_00500283-359
Terrisporobacter hibernicus, AnGL54 AnGL54_02022277-353
FD-25-21, AnGL21 AnGL21_01815286-361
Sunxiuqinia elliptica, AnGL22 AnGL22_03753317-391
Paraclostridium benzoelyticum, AnGL27 AnGL27_01438282-357
FD-MS-7-8, AnGL9 AnGL9_02320265-341
FD-YE-37-9-3, AnGL29 AnGL29_00474281-356
Methylobacterium radiotolerans, GTSA1 PaGL#34_05573289-370
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_03552289-360
Syntrophomonas erecta, GB-438 Ga0610585_00470261-336
Variovorax sp., EBFNA2 PaGL#33_00435302-377
Variovorax paradoxus, 2u118 PaGL#32_00425290-366
Dietzia cinnamea, 55 PaGL#56_01872285-366
Maridesulfovibrio salexigens, AnGL23 AnGL23_01652285-358
Exiguobacterium mexicanum, AnGL24 AnGL24_01065283-359
Clostridium subterminale, CB-LS10-1 AnGL53_01059278-354
Priestia megaterium, 10L1 PaGL#57_02934281-357
Variovorax paradoxus, SPNA7 PaGL#43_00398290-369
Geodermatophilus sp., RDM14 PaGL#36_03362279-351
Methylorubrum populi, CTY4 PaGL#39_03969298-381
Fictibacillus phosphorivorans, TY7 PaGL#38_03389285-362
Syntrophomonas wolfei, saponavida Swsap_00510261-336
Swsap_02706277-353
Bacillus subtilis, 30VD-1 PaGL#66_01593280-358
Peribacillus frigoritolerans, 30N-5 PaGL#67_02089281-357
Micromonospora inositola, Utrum1 PaGL#61_01547277-355
Sphingomonas sp., CR2A3 PaGL#62_02830292-358
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_02825282-358
Niallia taxi, AG-1 PaGL#37_02796280-357
MPOB, Sfum 639700922:Sfum_00180274-350
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_01665262-337
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_00475261-337
Syntrophomonas zehnderi, OL-4 Szehn Szehn_02045278-353
Ga0124040_14725:Szehn_02491275-351
Syntrophus aciditrophicus, SB 637860641:SYN_02186301-335
637860835:SYN_02353288-360
Syntrophus gentianae, DSM8423 Sgen_01792275-346
Mucilaginibacter gossypii, cycad 4 PaGL#42_02178289-360
Ruminococcus callidus, ATCC 27760 Rcal_00559279-355
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