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Spalm_01697 Locus tags: • Sequence Length: 499

Syntrophomonas palmitatica, JCM14374 Spalm Gs0110775

5050100100150150200200250250300300350350400400450450500500
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Spalm_00891 Spalm_01573 Spalm_00536 Spalm_02778 Spalm_00295 Spalm_01697 Spalm_01574 Spalm_01433 Spalm_02483 Spalm_01899 Spalm_02251 
    [SP]_[PF04463]_[PF03054]_[PF05670]_[TM]

    [SP]_[2:PF04463]_[162:PF03054]_[378:PF05670]_[TM]

    [SP]_[2:IPR007553]_[TM]

Looking for similar signatures in the working genomes

PF04463:2-thiour_desulf. 2-thiouracil desulfurase

Found 56 similar signatures
Acetivibrio thermocellus, DSM 1313 LOMAGDGF_021551-126
Clostridium acetobutylicum, DSM 1731 WP_010965636.1:FHOCHPCF_023715-148
Acetivibrio alkalicellulosi, DSM 17461 2510062612:NJMEOJLD_028101-144
Pseudobacteroides cellulosolvens, DSM 2933 WP_036938884.1:NEIHKHHH_037901-145
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_111223:GJLLLGJL_011982-146
Paenibacillus guangzhouensis, KCTC 33171 WP_152396676.1:KDFAKKPF_058981-146
Clostridium acetobutylicum, ATCC 824 WP_010965636.1:OJAMHIDJ_023815-148
Syntrophomonas erecta, DSM 16215 OINOEOOJ_009402-146
FD_25_22, AnGL7 AnGL7_0082010-151
FD_25_27, AnGL8 AnGL8_006223-145
FD_MS_7_1, AnGL28 AnGL28_018175-147
FD_SO4_37_1, AnGL2 AnGL2_009465-147
FD_YE_25_21, AnGL21 AnGL21_014706-146
FD_YE_37_3, AnGL26 AnGL26_018842-140
FD_YE_37_9_2, AnGL4 AnGL4_005981-139
AnGL4_021666-150
Syntrophus buswellii, Sbus Sbus_020349-150
Syntrophomonas curvata, Scurva Scurva_014732-146
Syntrophomonas erecta sporosyntropha, Sespor Sespor_000652-146
Syntrophomonas wolfei methylbutyratica, Swm Swm_013572-146
Terrisporobacter hibernicus, AnGL54 AnGL54_045467-149
AnGL54_046358-152
AnGL54_028861-145
FD-25-21, AnGL21 AnGL21_0178110-151
Sunxiuqinia elliptica, AnGL22 AnGL22_018812-140
Paraclostridium benzoelyticum, AnGL27 AnGL27_0055519-163
AnGL27_015096-146
AnGL27_015836-146
AnGL27_034551-146
FD-MS-7-8, AnGL9 AnGL9_022845-147
FD-YE-37-9-3, AnGL29 AnGL29_013231-139
AnGL29_028916-150
Syntrophomonas erecta, GB-438 Ga0610585_009402-146
Maridesulfovibrio salexigens, AnGL23 AnGL23_0228212-154
AnGL23_024602-133
Clostridium subterminale, CB-LS10-1 AnGL53_006782-141
AnGL53_009071-147
Priestia megaterium, 10L1 PaGL#57_048671-145
Fictibacillus phosphorivorans, TY7 PaGL#38_047058-149
Methanospirillum hungatei, GP1 MhGP1_031013-115
Methanospirillum stamsii, Pt1 MLKi8_0215310-150
Syntrophomonas wolfei, saponavida Swsap_030002-144
Bacillus subtilis, 30VD-1 PaGL#66_040161-146
Peribacillus frigoritolerans, 30N-5 PaGL#67_008941-145
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_013767-149
AnGL54_014638-152
AnGL54_036891-145
Niallia taxi, AG-1 PaGL#37_013031-144
Methanospirillum.hungatei GP1, MhGP1 8064049736:MhGP1_030453-115
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_112452:Mhun_0245016-157
MPOB, Sfum 639703618:Sfum_029226-146
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_11112:Spalm_016972-146
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_111223:Swol_011982-146
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_10210:Szehn_000231-146
Syntrophus aciditrophicus, SB 637858884:SYN_005409-150
Syntrophus gentianae, DSM8423 Ga0074853_13620:Sgen_030329-150

PF03054:tRNA_Me_trans. tRNA methyl transferase HUP domain

Found 71 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003516239.1:LOMAGDGF_015483-206
Clostridium acetobutylicum, DSM 1731 WP_010965531.1:FHOCHPCF_022712-202
WP_010965987.1:FHOCHPCF_02751215-249
Acetivibrio alkalicellulosi, DSM 17461 2510061597:NJMEOJLD_018163-206
2510062171:NJMEOJLD_02372215-249
Pseudobacteroides cellulosolvens, DSM 2933 WP_036942265.1:NEIHKHHH_015263-206
Ruminococcus albus_7, DSM 20455 WP_013498374.1:HCIAFFOI_017703-204
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_004750-188
GJLLLGJL_011971-101
Paenibacillus guangzhouensis, KCTC 33171 WP_152391767.1:KDFAKKPF_001728-204
Clostridium acetobutylicum, ATCC 824 WP_010965531.1:OJAMHIDJ_022802-202
WP_010965987.1:OJAMHIDJ_02759215-249
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137695819.1:PROKKA_022493-206
Syntrophomonas erecta, DSM 16215 OINOEOOJ_004700-188
FD_25_22, AnGL7 AnGL7_007857-204
FD_25_27, AnGL8 AnGL8_008752-193
FD_MS_7_1, AnGL28 AnGL28_0189011-205
FD_SO4_25_1_F22, AnGL30 AnGL30_006645-196
AnGL30_0102510-200
FD_SO4_37_1, AnGL2 AnGL2_0101911-205
FD_YE_25_21, AnGL21 AnGL21_018936-206
FD_YE_37_3, AnGL26 AnGL26_037571-204
FD_YE_37_8_2, AnGL3 AnGL3_032875-208
FD_YE_37_9_2, AnGL4 AnGL4_032162-204
Syntrophus buswellii, Sbus Sbus_0174235-232
Syntrophomonas curvata, Scurva Scurva_009630-188
Syntrophomonas erecta sporosyntropha, Sespor Sespor_005340-188
Syntrophomonas wolfei methylbutyratica, Swm Swm_0050023-210
Swm_013561-101
Terrisporobacter hibernicus, AnGL54 AnGL54_020221-201
FD-25-21, AnGL21 AnGL21_018157-204
Sunxiuqinia elliptica, AnGL22 AnGL22_037531-204
Paraclostridium benzoelyticum, AnGL27 AnGL27_014382-205
FD-MS-7-8, AnGL9 AnGL9_023200-189
FD-YE-37-9-3, AnGL29 AnGL29_004742-204
Methylobacterium radiotolerans, GTSA1 PaGL#34_0557313-212
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_035525-207
Syntrophomonas erecta, GB-438 Ga0610585_004700-188
Variovorax sp., EBFNA2 PaGL#33_0043515-214
Variovorax paradoxus, 2u118 PaGL#32_004253-202
Dietzia cinnamea, 55 PaGL#56_018720-205
Maridesulfovibrio salexigens, AnGL23 AnGL23_0165217-207
Exiguobacterium mexicanum, AnGL24 AnGL24_0106511-207
Clostridium subterminale, CB-LS10-1 AnGL53_00507214-248
AnGL53_010592-202
Priestia megaterium, 10L1 PaGL#57_029348-204
Variovorax paradoxus, SPNA7 PaGL#43_003983-202
Geodermatophilus sp., RDM14 PaGL#36_033620-196
Methylorubrum populi, CTY4 PaGL#39_0396923-222
Fictibacillus phosphorivorans, TY7 PaGL#38_0338913-209
Syntrophomonas wolfei, saponavida Swsap_005103-188
Swsap_027063-202
Bacillus subtilis, 30VD-1 PaGL#66_015938-204
Peribacillus frigoritolerans, 30N-5 PaGL#67_020898-204
Micromonospora inositola, Utrum1 PaGL#61_015470-197
Sphingomonas sp., CR2A3 PaGL#62_0283015-213
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_028252-206
Niallia taxi, AG-1 PaGL#37_027968-204
MPOB, Sfum 639700922:Sfum_001800-196
639702890:Sfum_02183222-256
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_11112:Spalm_01697162-245
Spalm_016651-188
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_004750-188
Swol_011971-101
Syntrophomonas zehnderi, OL-4 Szehn Szehn_020452-201
Ga0124040_14725:Szehn_024914-199
Syntrophus aciditrophicus, SB 637860641:SYN_0218615-163
637860835:SYN_0235316-213
Syntrophus gentianae, DSM8423 Sgen_017922-199
Mucilaginibacter gossypii, cycad 4 PaGL#42_021785-207
Ruminococcus callidus, ATCC 27760 Rcal_005592-203

PF05670:NFACT-R_1. NFACT protein RNA binding domain

Found 82 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003520265.1:LOMAGDGF_01711464-565
470-553
Clostridium acetobutylicum, DSM 1731 WP_010965410.1:FHOCHPCF_02150455-555
456-543
Acetivibrio alkalicellulosi, DSM 17461 2510061819:NJMEOJLD_02033465-565
Pseudobacteroides cellulosolvens, DSM 2933 WP_036939167.1:NEIHKHHH_03435464-566
465-553
Ruminococcus albus_7, DSM 20455 WP_013499401.1:HCIAFFOI_02904461-572
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_01197222-324
Ga0065332_111348:GJLLLGJL_01317465-558
465-571
Paenibacillus guangzhouensis, KCTC 33171 WP_152392307.1:KDFAKKPF_00782468-566
474-549
WP_193726867.1:KDFAKKPF_02149421-516
421-504
Clostridium acetobutylicum, ATCC 824 WP_010965410.1:OJAMHIDJ_02159455-555
456-543
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137698682.1:PROKKA_02304464-564
Syntrophomonas erecta, DSM 16215 OINOEOOJ_00593465-571
OINOEOOJ_00941222-325
FD_MS_7_1, AnGL28 AnGL28_0006014-113
15-98
FD_SO4_37_1, AnGL2 AnGL2_0273914-113
15-98
FD_YE_37_9_2, AnGL4 AnGL4_00083457-561
460-546
Syntrophus buswellii, Sbus Sbus_01796221-323
Syntrophomonas curvata, Scurva Scurva_01472222-323
Scurva_01703464-569
Syntrophomonas erecta sporosyntropha, Sespor Sespor_00064222-325
Sespor_00411465-571
Syntrophomonas wolfei methylbutyratica, Swm Swm_01356222-324
Swm_01489465-555
465-571
Terrisporobacter hibernicus, AnGL54 AnGL54_02160466-567
468-555
Paraclostridium benzoelyticum, AnGL27 AnGL27_03253466-567
468-555
FD-MS-7-8, AnGL9 AnGL9_0065521-113
FD-YE-37-9-3, AnGL29 AnGL29_00808457-561
460-546
Syntrophomonas erecta, GB-438 Ga0610585_00593465-571
Ga0610585_00941222-325
Maridesulfovibrio salexigens, AnGL23 AnGL23_00092226-324
AnGL23_00599379-481
Exiguobacterium mexicanum, AnGL24 AnGL24_01216445-542
450-528
Clostridium subterminale, CB-LS10-1 AnGL53_00244221-324
AnGL53_01433461-563
464-553
Priestia megaterium, 10L1 PaGL#57_03302452-549
455-536
Methanospirillum lacunae, Ki8-1 MLKi8_01947427-532
Fictibacillus phosphorivorans, TY7 PaGL#38_02220452-532
452-549
Methanospirillum hungatei, GP1 MhGP1_02078427-532
Methanospirillum stamsii, Pt1 MLKi8_02632426-531
Syntrophomonas wolfei, saponavida Swsap_02607457-565
Swsap_02999222-321
Bacillus subtilis, 30VD-1 PaGL#66_02565452-549
457-536
Peribacillus frigoritolerans, 30N-5 PaGL#67_04039452-548
460-535
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_02963466-567
468-555
Niallia taxi, AG-1 PaGL#37_01349457-548
457-531
Methanospirillum.hungatei GP1, MhGP1 8064047470:MhGP1_00825427-532
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_111306:Mhun_01307427-532
MPOB, Sfum 639701825:Sfum_01100225-309
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_11112:Spalm_01697378-475
Ga0128340_10883:Spalm_01367354-462
356-447
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_01197222-324
Ga0065332_111348:Swol_01317465-571
465-558
Syntrophomonas zehnderi, OL-4 Szehn Szehn_00024221-323
Ga0124040_12932:Szehn_01749464-570
Syntrophus aciditrophicus, SB SYN_01824222-324
Syntrophus gentianae, DSM8423 Ga0074853_107111:Sgen_01271221-323
Ruminococcus callidus, ATCC 27760 Rcal_00459462-563
463-545
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