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PROKKA_01516 Locus tags: • Sequence Length: 493

Ruminiclostridium herbifermentans MA18, DSM 109966 GCF_005473905.2

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PROKKA_01510 PROKKA_01512 unknown PROKKA_01516 PROKKA_01518 PROKKA_01521 
    [PF17125]_[PF01189]_[PF17126]_[PF13636]

    [2:PF17125]_[98:PF01189]_[345:PF17126]_[421:PF13636]

    [1:IPR029063]_[2:IPR031341]_[21:IPR001678]_[76:IPR023267]_[98:IPR001678]_[105:IPR023267]_[172:IPR023267]_[222:IPR023267]_[283:IPR023267]_[345:IPR031340]_[421:IPR027391]

Looking for similar signatures in the working genomes

PF17125:Methyltr_RsmF_N. N-terminal domain of 16S rRNA methyltransferase RsmF

Found 26 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003511692.1:LOMAGDGF_007462-92
WP_003517649.1:LOMAGDGF_01721164-249
Acetivibrio alkalicellulosi, DSM 17461 2510061828:NJMEOJLD_02042168-248
2510062678:NJMEOJLD_028743-92
Pseudobacteroides cellulosolvens, DSM 2933 WP_036938085.1:NEIHKHHH_019082-92
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_01269165-249
Paenibacillus guangzhouensis, KCTC 33171 WP_152392318.1:KDFAKKPF_00794159-249
WP_152394349.1:KDFAKKPF_031404-96
WP_152394354.1:KDFAKKPF_031484-93
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137696485.1:PROKKA_015162-91
WP_137698670.1:PROKKA_02316152-244
FD_25_22, AnGL7 AnGL7_016446-103
FD_25_27, AnGL8 AnGL8_022046-103
FD_SO4_25_1_F22, AnGL30 AnGL30_007713-91
FD_YE_25_21, AnGL21 AnGL21_015306-104
FD_YE_37_8_2, AnGL3 AnGL3_011244-88
FD_YE_37_9_2, AnGL4 AnGL4_03309159-244
Syntrophomonas wolfei methylbutyratica, Swm Swm_01436166-249
Terrisporobacter hibernicus, AnGL54 AnGL54_02148164-240
FD-25-21, AnGL21 AnGL21_009366-103
Paraclostridium benzoelyticum, AnGL27 AnGL27_03241152-240
FD-YE-37-9-3, AnGL29 AnGL29_00567159-244
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_064448-90
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_02951164-240
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_01269165-249
Mucilaginibacter gossypii, cycad 4 PaGL#42_055408-90

PF01189:Methyltr_RsmB-F. 16S rRNA methyltransferase RsmB/F

Found 78 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003511692.1:LOMAGDGF_0074696-300
WP_003517649.1:LOMAGDGF_01721252-450
Clostridium acetobutylicum, DSM 1731 WP_010965032.1:FHOCHPCF_01768245-438
Acetivibrio alkalicellulosi, DSM 17461 2510061828:NJMEOJLD_02042252-475
2510062678:NJMEOJLD_0287499-299
Pseudobacteroides cellulosolvens, DSM 2933 WP_036938085.1:NEIHKHHH_0190899-300
WP_036939176.1:NEIHKHHH_03446248-446
Ruminococcus albus_7, DSM 20455 WP_013498475.1:HCIAFFOI_01874244-428
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_01269252-454
Paenibacillus guangzhouensis, KCTC 33171 WP_152392318.1:KDFAKKPF_00794253-456
WP_152394349.1:KDFAKKPF_03140100-280
WP_152394354.1:KDFAKKPF_0314897-314
Clostridium acetobutylicum, ATCC 824 WP_010965032.1:OJAMHIDJ_01775245-438
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137696485.1:PROKKA_0151698-300
WP_137698670.1:PROKKA_02316248-445
Syntrophomonas erecta, DSM 16215 OINOEOOJ_00639255-456
FD_25_22, AnGL7 AnGL7_00094238-428
AnGL7_01644114-309
FD_25_27, AnGL8 AnGL8_01256237-422
AnGL8_02204115-307
FD_MS_7_1, AnGL28 AnGL28_00085240-430
AnGL28_00707238-403
FD_SO4_25_1_F22, AnGL30 AnGL30_00771113-303
FD_SO4_37_1, AnGL2 AnGL2_02764240-430
AnGL2_03386238-403
FD_YE_25_21, AnGL21 AnGL21_01530115-308
AnGL21_03110237-423
FD_YE_37_8_2, AnGL3 AnGL3_01124101-292
FD_YE_37_9_2, AnGL4 AnGL4_03309250-445
Syntrophus buswellii, Sbus Sbus_01001251-448
Syntrophomonas curvata, Scurva Scurva_01655253-455
Syntrophomonas erecta sporosyntropha, Sespor Sespor_00365255-456
Syntrophomonas wolfei methylbutyratica, Swm Swm_01436252-454
Terrisporobacter hibernicus, AnGL54 AnGL54_02148244-437
FD-25-21, AnGL21 AnGL21_00936113-309
AnGL21_02526238-428
Paraclostridium benzoelyticum, AnGL27 AnGL27_03241246-438
FD-MS-7-8, AnGL9 AnGL9_00188239-401
AnGL9_00632250-439
FD-YE-37-9-3, AnGL29 AnGL29_00567250-445
Methylobacterium radiotolerans, GTSA1 PaGL#34_00192161-365
PaGL#34_01200225-423
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_02157206-358
PaGL#35_06444107-298
Syntrophomonas erecta, GB-438 Ga0610585_00639255-456
Variovorax sp., EBFNA2 PaGL#33_00625282-468
PaGL#33_04895212-418
Variovorax paradoxus, 2u118 PaGL#32_00632251-437
PaGL#32_01247212-418
Dietzia cinnamea, 55 PaGL#56_01643243-438
Maridesulfovibrio salexigens, AnGL23 AnGL23_03110250-401
AnGL23_03868138-286
Exiguobacterium mexicanum, AnGL24 AnGL24_01222241-439
Clostridium subterminale, CB-LS10-1 AnGL53_01109246-439
Priestia megaterium, 10L1 PaGL#57_03312245-443
Variovorax paradoxus, SPNA7 PaGL#43_00607251-437
PaGL#43_01239212-418
Geodermatophilus sp., RDM14 PaGL#36_02130240-424
Methylorubrum populi, CTY4 PaGL#39_00395235-415
PaGL#39_02642165-363
Fictibacillus phosphorivorans, TY7 PaGL#38_02229247-446
Syntrophomonas wolfei, saponavida Swsap_02653264-465
Bacillus subtilis, 30VD-1 PaGL#66_02555244-443
Peribacillus frigoritolerans, 30N-5 PaGL#67_04028247-446
Micromonospora inositola, Utrum1 PaGL#61_02490329-522
Sphingomonas sp., CR2A3 PaGL#62_00753202-391
PaGL#62_02709241-427
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_02951244-437
Niallia taxi, AG-1 PaGL#37_01359246-446
MPOB, Sfum 639700905:Sfum_00164248-446
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_01309255-455
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_01269252-454
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_12976:Szehn_01793255-454
Syntrophus aciditrophicus, SB 637859275:SYN_00898271-468
Syntrophus gentianae, DSM8423 Sgen_00574266-461
Mucilaginibacter gossypii, cycad 4 PaGL#42_03366205-359
PaGL#42_05540100-297
Ruminococcus callidus, ATCC 27760 Rcal_00633237-429

PF17126:RsmF_methylt_CI. RsmF rRNA methyltransferase first C-terminal domain

Found 6 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003511692.1:LOMAGDGF_00746328-389
Acetivibrio alkalicellulosi, DSM 17461 2510062678:NJMEOJLD_02874327-384
Pseudobacteroides cellulosolvens, DSM 2933 WP_036938085.1:NEIHKHHH_01908334-393
Paenibacillus guangzhouensis, KCTC 33171 WP_152394349.1:KDFAKKPF_03140330-398
WP_152394354.1:KDFAKKPF_03148354-416
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137696485.1:PROKKA_01516345-403

PF13636:Methyltranf_PUA. RNA-binding PUA-like domain of methyltransferase RsmF

Found 13 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003511692.1:LOMAGDGF_00746407-454
Acetivibrio alkalicellulosi, DSM 17461 2510062678:NJMEOJLD_02874405-452
Pseudobacteroides cellulosolvens, DSM 2933 WP_036938085.1:NEIHKHHH_01908411-459
Paenibacillus guangzhouensis, KCTC 33171 WP_152394349.1:KDFAKKPF_03140417-465
WP_152394354.1:KDFAKKPF_03148433-492
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137696485.1:PROKKA_01516421-468
FD_25_27, AnGL8 AnGL8_02204422-471
FD_SO4_25_1_F22, AnGL30 AnGL30_00771423-473
FD_YE_25_21, AnGL21 AnGL21_01530420-470
FD_YE_37_8_2, AnGL3 AnGL3_01124401-450
FD-25-21, AnGL21 AnGL21_00936423-472
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_06444405-454
Mucilaginibacter gossypii, cycad 4 PaGL#42_05540405-454
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