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PaGL#32_02248 Locus tags: • Sequence Length: 701

Variovorax paradoxus, 2u118 Batch2_genome_fasta/V.paradoxus

5050100100150150200200250250300300350350400400450450500500550550600600650650700700750750
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PaGL#32_02244 PaGL#32_02248 PaGL#32_02250 PaGL#32_02251
    [SP]_[PF05345]_[PF05345]_[PF05345]_[PF01344]_[TM]

    [SP]_[86:PF05345]_[179:PF05345]_[270:PF05345]_[456:PF01344]_[TM]

    [SP]_[78:IPR015919]_[168:IPR015919]_[254:IPR015919]_[335:IPR015915]_[362:IPR006652]_[410:IPR006652]_[456:IPR006652]_[459:IPR006652]_[569:IPR015915]_[601:IPR006652]_[TM]
    

Looking for similar signatures in the working genomes

PF05345:He_PIG. Putative Ig domain

Found 64 similar signatures
Acetivibrio alkalicellulosi, DSM 17461 2510063791:NJMEOJLD_039661512-1561
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_11193:GJLLLGJL_00185153-230
Ga0065332_111470:GJLLLGJL_01440443-509
Paenibacillus guangzhouensis, KCTC 33171 WP_193726735.1:KDFAKKPF_00452613-699
WP_152392027.1:KDFAKKPF_00457272-355
FD_MS_7_1, AnGL28 AnGL28_003761249-1326
1742-1821
AnGL28_0140263-143
AnGL28_01727943-1023
AnGL28_0201149-118
FD_SO4_37_1, AnGL2 AnGL2_0053163-143
AnGL2_00856943-1023
AnGL2_0114049-118
AnGL2_030551249-1326
1742-1821
FD_YE_37_3, AnGL26 AnGL26_015671565-1654
FD-25-21, AnGL21 AnGL21_031532215-2311
2317-2413
2419-2515
2521-2617
2623-2719
2725-2821
2827-2923
2929-3025
3031-3127
3133-3229
3235-3331
3337-3433
3439-3535
3541-3637
3643-3739
3745-3841
3847-3943
3949-4045
4051-4147
4153-4249
4255-4351
4357-4453
4459-4555
4561-4657
4663-4759
4765-4861
4867-4963
Sunxiuqinia elliptica, AnGL22 AnGL22_015691565-1654
FD-MS-7-8, AnGL9 AnGL9_02535324-404
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_02231295-366
Variovorax paradoxus, 2u118 PaGL#32_0224886-153
179-240
270-334
Syntrophomonas wolfei, saponavida Swsap_02430843-917
Swsap_03337346-407
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_1331:Spalm_02804312-373
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_11193:Swol_00185153-230
Ga0065332_111470:Swol_01440443-509
Mucilaginibacter gossypii, cycad 4 PaGL#42_00598567-649
1356-1429
1803-1880
PaGL#42_020631448-1530
PaGL#42_03000375-427
PaGL#42_03127294-364
PaGL#42_03325292-365
PaGL#42_03658566-642
1351-1427
PaGL#42_05708365-415

PF05345:He_PIG. Putative Ig domain

Found 64 similar signatures
Acetivibrio alkalicellulosi, DSM 17461 2510063791:NJMEOJLD_039661512-1561
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_11193:GJLLLGJL_00185153-230
Ga0065332_111470:GJLLLGJL_01440443-509
Paenibacillus guangzhouensis, KCTC 33171 WP_193726735.1:KDFAKKPF_00452613-699
WP_152392027.1:KDFAKKPF_00457272-355
FD_MS_7_1, AnGL28 AnGL28_003761249-1326
1742-1821
AnGL28_0140263-143
AnGL28_01727943-1023
AnGL28_0201149-118
FD_SO4_37_1, AnGL2 AnGL2_0053163-143
AnGL2_00856943-1023
AnGL2_0114049-118
AnGL2_030551249-1326
1742-1821
FD_YE_37_3, AnGL26 AnGL26_015671565-1654
FD-25-21, AnGL21 AnGL21_031532215-2311
2317-2413
2419-2515
2521-2617
2623-2719
2725-2821
2827-2923
2929-3025
3031-3127
3133-3229
3235-3331
3337-3433
3439-3535
3541-3637
3643-3739
3745-3841
3847-3943
3949-4045
4051-4147
4153-4249
4255-4351
4357-4453
4459-4555
4561-4657
4663-4759
4765-4861
4867-4963
Sunxiuqinia elliptica, AnGL22 AnGL22_015691565-1654
FD-MS-7-8, AnGL9 AnGL9_02535324-404
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_02231295-366
Variovorax paradoxus, 2u118 PaGL#32_0224886-153
179-240
270-334
Syntrophomonas wolfei, saponavida Swsap_02430843-917
Swsap_03337346-407
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_1331:Spalm_02804312-373
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_11193:Swol_00185153-230
Ga0065332_111470:Swol_01440443-509
Mucilaginibacter gossypii, cycad 4 PaGL#42_00598567-649
1356-1429
1803-1880
PaGL#42_020631448-1530
PaGL#42_03000375-427
PaGL#42_03127294-364
PaGL#42_03325292-365
PaGL#42_03658566-642
1351-1427
PaGL#42_05708365-415

PF05345:He_PIG. Putative Ig domain

Found 64 similar signatures
Acetivibrio alkalicellulosi, DSM 17461 2510063791:NJMEOJLD_039661512-1561
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_11193:GJLLLGJL_00185153-230
Ga0065332_111470:GJLLLGJL_01440443-509
Paenibacillus guangzhouensis, KCTC 33171 WP_193726735.1:KDFAKKPF_00452613-699
WP_152392027.1:KDFAKKPF_00457272-355
FD_MS_7_1, AnGL28 AnGL28_003761249-1326
1742-1821
AnGL28_0140263-143
AnGL28_01727943-1023
AnGL28_0201149-118
FD_SO4_37_1, AnGL2 AnGL2_0053163-143
AnGL2_00856943-1023
AnGL2_0114049-118
AnGL2_030551249-1326
1742-1821
FD_YE_37_3, AnGL26 AnGL26_015671565-1654
FD-25-21, AnGL21 AnGL21_031532215-2311
2317-2413
2419-2515
2521-2617
2623-2719
2725-2821
2827-2923
2929-3025
3031-3127
3133-3229
3235-3331
3337-3433
3439-3535
3541-3637
3643-3739
3745-3841
3847-3943
3949-4045
4051-4147
4153-4249
4255-4351
4357-4453
4459-4555
4561-4657
4663-4759
4765-4861
4867-4963
Sunxiuqinia elliptica, AnGL22 AnGL22_015691565-1654
FD-MS-7-8, AnGL9 AnGL9_02535324-404
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_02231295-366
Variovorax paradoxus, 2u118 PaGL#32_0224886-153
179-240
270-334
Syntrophomonas wolfei, saponavida Swsap_02430843-917
Swsap_03337346-407
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_1331:Spalm_02804312-373
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_11193:Swol_00185153-230
Ga0065332_111470:Swol_01440443-509
Mucilaginibacter gossypii, cycad 4 PaGL#42_00598567-649
1356-1429
1803-1880
PaGL#42_020631448-1530
PaGL#42_03000375-427
PaGL#42_03127294-364
PaGL#42_03325292-365
PaGL#42_03658566-642
1351-1427
PaGL#42_05708365-415

PF01344:Kelch_1. Kelch motif

Found 69 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_014522593.1:LOMAGDGF_0062322-73
85-120
137-180
187-230
236-271
283-313
Acetivibrio alkalicellulosi, DSM 17461 2510060367:NJMEOJLD_00615490-536
2510060840:NJMEOJLD_01077466-519
2510061699:NJMEOJLD_019151677-1715
1726-1769
1776-1821
1822-1862
2510062070:NJMEOJLD_02278570-610
2510064181:NJMEOJLD_04349490-533
584-631
648-680
684-726
Pseudobacteroides cellulosolvens, DSM 2933 WP_050753016.1:NEIHKHHH_00518743-789
791-836
837-884
885-932
936-979
WP_036945771.1:NEIHKHHH_01262587-635
735-781
WP_036943752.1:NEIHKHHH_01449673-706
716-747
WP_050753286.1:NEIHKHHH_01809568-615
WP_050753797.1:NEIHKHHH_05071842-884
889-930
932-977
978-1019
1070-1114
1117-1163
1167-1216
1217-1273
1274-1323
WP_050753885.1:NEIHKHHH_05481162-197
215-255
270-304
322-368
WP_036944933.1:NEIHKHHH_05592890-934
936-978
1000-1045
1093-1132
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_171003596.1:PROKKA_0080044-87
90-124
WP_137698542.1:PROKKA_0234259-100
WP_171003635.1:PROKKA_02679336-380
383-428
429-475
481-521
522-563
FD_YE_37_8_2, AnGL3 AnGL3_0044744-93
195-235
Syntrophus buswellii, Sbus Sbus_0175099-144
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0518694-140
206-255
Variovorax paradoxus, 2u118 PaGL#32_02248456-494
Variovorax paradoxus, SPNA7 PaGL#43_03564132-178
279-333
Methanospirillum lacunae, Ki8-1 MLKi8_03164618-662
715-759
Methylorubrum populi, CTY4 PaGL#39_0042281-131
178-226
227-272
Bacillus subtilis, 30VD-1 PaGL#66_015083-48
101-137
Micromonospora inositola, Utrum1 PaGL#61_026351034-1076
1077-1121
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