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PaGL#32_05109 Locus tags: • Sequence Length: 165

Variovorax paradoxus, 2u118 Batch2_genome_fasta/V.paradoxus

5050100100150150200200
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PaGL#32_05104 PaGL#32_05106 PaGL#32_05108 PaGL#32_05110 PaGL#32_05114 
    [PF13412]_[PF01037]

    [4:PF13412]_[69:PF01037]

    [3:IPR000485]_[3:IPR019888]_[3:IPR000485]_[3:IPR036390]_[4:IPR011991]_[19:IPR000485]_[30:IPR000485]_[63:IPR011008]_[69:IPR019887]

Looking for similar signatures in the working genomes

PF13412:HTH_24. Winged helix-turn-helix DNA-binding

Found 205 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003521161.1:LOMAGDGF_0188815-59
WP_003512628.1:LOMAGDGF_019162-43
Clostridium acetobutylicum, DSM 1731 WP_010966934.1:FHOCHPCF_037327-53
WP_010964251.1:FHOCHPCF_009814-51
WP_010964295.1:FHOCHPCF_010297-55
WP_010964776.1:FHOCHPCF_015182-50
Pseudobacteroides cellulosolvens, DSM 2933 WP_036940900.1:NEIHKHHH_0087216-59
Ruminococcus albus_7, DSM 20455 WP_013483952.1:HCIAFFOI_04107169-198
WP_013498405.1:HCIAFFOI_018032-44
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_111336:GJLLLGJL_013055-49
Paenibacillus guangzhouensis, KCTC 33171 WP_152394542.1:KDFAKKPF_033640-48
WP_152394623.1:KDFAKKPF_0345717-57
WP_227793253.1:KDFAKKPF_036350-47
WP_152395945.1:KDFAKKPF_050580-48
Clostridium acetobutylicum, ATCC 824 WP_010964251.1:OJAMHIDJ_009844-51
WP_010964295.1:OJAMHIDJ_010327-55
WP_010964776.1:OJAMHIDJ_015222-50
WP_010966934.1:OJAMHIDJ_037447-53
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137698683.1:PROKKA_023035-52
WP_137698837.1:PROKKA_026772-43
WP_137698632.1:PROKKA_036626-47
WP_137698805.1:PROKKA_0370520-60
Syntrophomonas erecta, DSM 16215 OINOEOOJ_006077-49
FD_25_22, AnGL7 AnGL7_000080-47
AnGL7_002732-49
AnGL7_007053-47
FD_25_27, AnGL8 AnGL8_002243-49
AnGL8_002494-52
AnGL8_00822438-485
AnGL8_0204710-58
FD_MS_7_1, AnGL28 AnGL28_0125720-61
FD_SO4_37_1, AnGL2 AnGL2_0038720-61
FD_YE_25_21, AnGL21 AnGL21_0380910-57
AnGL21_0096411-58
AnGL21_010927-53
AnGL21_020001-48
AnGL21_021042-49
AnGL21_033670-48
FD_YE_37_3, AnGL26 AnGL26_0064122-66
AnGL26_0064421-66
FD_YE_37_9_2, AnGL4 AnGL4_0117110-55
AnGL4_0124126-56
AnGL4_0279116-59
AnGL4_033776-45
Syntrophus buswellii, Sbus Sbus_00778409-455
Syntrophomonas curvata, Scurva Scurva_0067021-50
Scurva_016906-49
Syntrophomonas erecta sporosyntropha, Sespor Sespor_003977-49
Syntrophomonas wolfei methylbutyratica, Swm Swm_0147718-62
Terrisporobacter hibernicus, AnGL54 AnGL54_0111320-59
AnGL54_0117111-54
AnGL54_011901-47
AnGL54_0194514-62
AnGL54_033470-48
FD-25-21, AnGL21 AnGL21_018943-47
AnGL21_023642-49
AnGL21_026130-47
Sunxiuqinia elliptica, AnGL22 AnGL22_0064222-66
AnGL22_0064521-66
Paraclostridium benzoelyticum, AnGL27 AnGL27_0052215-62
AnGL27_008200-48
AnGL27_0257919-57
FD-YE-37-9-3, AnGL29 AnGL29_0004916-59
AnGL29_006356-45
AnGL29_0189610-55
AnGL29_0196626-56
Methylobacterium radiotolerans, GTSA1 PaGL#34_051970-48
PaGL#34_060607-55
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0073811-58
PaGL#35_008156-53
PaGL#35_027578-55
PaGL#35_0303017-65
Syntrophomonas erecta, GB-438 Ga0610585_006077-49
Variovorax sp., EBFNA2 PaGL#33_0092615-63
PaGL#33_013135-52
PaGL#33_013783-51
PaGL#33_015613-51
PaGL#33_0233829-71
PaGL#33_037758-56
PaGL#33_0380115-62
PaGL#33_0392112-55
PaGL#33_041853-50
PaGL#33_046814-51
PaGL#33_055103-50
PaGL#33_0575617-57
PaGL#33_058994-51
PaGL#33_059222-49
Variovorax paradoxus, 2u118 PaGL#32_0529912-55
PaGL#32_056222-49
PaGL#32_062707-53
PaGL#32_0210715-62
PaGL#32_021418-55
PaGL#32_036813-50
PaGL#32_040573-50
PaGL#32_047283-50
PaGL#32_047845-53
PaGL#32_0501016-56
PaGL#32_0508519-67
PaGL#32_051094-51
PaGL#32_051292-49
Maridesulfovibrio salexigens, AnGL23 AnGL23_00063257-289
AnGL23_019493-50
AnGL23_020056-52
Exiguobacterium mexicanum, AnGL24 AnGL24_025181-49
Clostridium subterminale, CB-LS10-1 AnGL53_021613-47
Priestia megaterium, 10L1 PaGL#57_026043-49
PaGL#57_027684-50
PaGL#57_0563116-59
PaGL#57_066710-48
PaGL#57_069391-49
Variovorax paradoxus, SPNA7 PaGL#43_056122-49
PaGL#43_062267-53
PaGL#43_0221715-62
PaGL#43_024018-55
PaGL#43_037213-50
PaGL#43_042193-50
PaGL#43_048713-50
PaGL#43_049305-53
PaGL#43_0520816-56
PaGL#43_0528119-67
PaGL#43_053054-51
PaGL#43_053312-49
Methanospirillum lacunae, Ki8-1 MLKi8_0095716-64
MLKi8_023440-49
MLKi8_0294645-87
MLKi8_03095173-214
Geodermatophilus sp., RDM14 PaGL#36_026242-50
Fictibacillus phosphorivorans, TY7 PaGL#38_0388111-53
PaGL#38_041140-47
PaGL#38_0412630-71
Methanospirillum hungatei, GP1 MhGP1_00606183-225
MhGP1_00801178-219
MhGP1_00820174-216
MhGP1_00894127-170
MhGP1_0094715-63
MhGP1_01732162-206
MhGP1_0223044-87
Methanospirillum stamsii, Pt1 MLKi8_01147133-171
MLKi8_0120015-63
MLKi8_01806371-416
MLKi8_02143162-209
MLKi8_027521-44
MLKi8_0280337-86
Syntrophomonas wolfei, saponavida Swsap_026206-49
Bacillus subtilis, 30VD-1 PaGL#66_011703-49
PaGL#66_016844-52
PaGL#66_0237013-56
PaGL#66_035270-48
PaGL#66_036701-49
PaGL#66_037632-50
Peribacillus frigoritolerans, 30N-5 PaGL#67_012240-48
PaGL#67_012840-48
PaGL#67_0184512-56
PaGL#67_027612-50
PaGL#67_037992-45
PaGL#67_045663-50
PaGL#67_045680-48
PaGL#67_0501014-57
Micromonospora inositola, Utrum1 PaGL#61_038040-48
PaGL#61_0434021-69
PaGL#61_058781-45
Sphingomonas sp., CR2A3 PaGL#62_006293-50
PaGL#62_016380-30
PaGL#62_036937-53
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_001770-48
AnGL54_0184120-59
AnGL54_0189911-54
AnGL54_019181-47
AnGL54_0274814-62
Niallia taxi, AG-1 PaGL#37_041140-48
PaGL#37_002348-55
PaGL#37_0439114-62
PaGL#37_005270-45
PaGL#37_0489717-58
PaGL#37_0104425-56
PaGL#37_021660-47
PaGL#37_029744-50
PaGL#37_0362919-64
Methanospirillum.hungatei GP1, MhGP1 8064047316:MhGP1_0067344-87
8064047822:MhGP1_01171162-206
8064048628:MhGP1_0195515-63
8064048681:MhGP1_02008127-170
8064048756:MhGP1_02082174-216
8064048775:MhGP1_02101178-219
8064048973:MhGP1_02296183-225
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_1136:Mhun_0003615-63
Ga0065338_11400:Mhun_00398168-208
Ga0065338_111194:Mhun_01194174-212
Ga0065338_111420:Mhun_01420370-416
Ga0065338_111971:Mhun_0197242-87
Ga0065338_113180:Mhun_03177185-227
Ga0065338_113449:Mhun_03445134-172
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_10866:Spalm_013506-50
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_111336:Swol_013055-49
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_12944:Szehn_017619-49
Syntrophus aciditrophicus, SB 637860982:SYN_0248911-57
Syntrophus gentianae, DSM8423 Sgen_02985267-308
Mucilaginibacter gossypii, cycad 4 PaGL#42_0104113-57
PaGL#42_012864-52
PaGL#42_016414-52
PaGL#42_027778-56
PaGL#42_0522011-58
PaGL#42_05699327-352
Ruminococcus callidus, ATCC 27760 Rcal_010133-45
Rcal_0295013-57

PF01037:AsnC_trans_reg. Lrp/AsnC ligand binding domain

Found 194 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003512628.1:LOMAGDGF_0191663-137
Clostridium acetobutylicum, DSM 1731 WP_010964295.1:FHOCHPCF_0102973-146
WP_010964776.1:FHOCHPCF_0151868-136
Acetivibrio alkalicellulosi, DSM 17461 2510063644:NJMEOJLD_0382263-137
Pseudobacteroides cellulosolvens, DSM 2933 WP_036939513.1:NEIHKHHH_0014369-121
WP_036947371.1:NEIHKHHH_0228763-137
Ruminococcus albus_7, DSM 20455 WP_013498405.1:HCIAFFOI_0180363-137
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_111270:GJLLLGJL_0124467-141
Paenibacillus guangzhouensis, KCTC 33171 WP_152394542.1:KDFAKKPF_0336471-131
WP_227793253.1:KDFAKKPF_0363569-141
WP_152395188.1:KDFAKKPF_0411672-131
KDFAKKPF_0501879-137
WP_152395945.1:KDFAKKPF_0505873-131
Clostridium acetobutylicum, ATCC 824 WP_010964295.1:OJAMHIDJ_0103273-146
WP_010964776.1:OJAMHIDJ_0152268-136
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137698683.1:PROKKA_0230372-145
WP_137698837.1:PROKKA_0267763-137
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0070067-141
FD_25_22, AnGL7 AnGL7_0000866-139
AnGL7_0027368-142
AnGL7_0070569-144
FD_25_27, AnGL8 AnGL8_0120069-144
AnGL8_0122476-144
AnGL8_0022478-136
AnGL8_0024970-145
AnGL8_0204776-151
FD_MS_7_1, AnGL28 AnGL28_0324663-137
FD_SO4_25_1_F22, AnGL30 AnGL30_0068473-142
AnGL30_0114669-142
FD_SO4_37_1, AnGL2 AnGL2_0237663-137
FD_YE_25_21, AnGL21 AnGL21_0380977-149
AnGL21_0005373-144
AnGL21_0096477-152
AnGL21_0109271-144
AnGL21_0207385-158
AnGL21_0210468-142
AnGL21_0336766-139
FD_YE_37_3, AnGL26 AnGL26_0072186-149
AnGL26_0328774-145
FD_YE_37_8_2, AnGL3 AnGL3_0046581-144
FD_YE_37_9_2, AnGL4 AnGL4_0078564-138
Syntrophus buswellii, Sbus Sbus_023258-77
Sbus_0273584-153
Syntrophomonas curvata, Scurva Scurva_0143867-141
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0031467-141
Syntrophomonas wolfei methylbutyratica, Swm Swm_0140467-141
Terrisporobacter hibernicus, AnGL54 AnGL54_0194582-150
AnGL54_0334766-134
FD-25-21, AnGL21 AnGL21_0189469-144
AnGL21_0207466-140
AnGL21_0236468-142
AnGL21_0261366-139
Sunxiuqinia elliptica, AnGL22 AnGL22_0072286-149
AnGL22_0328374-145
Paraclostridium benzoelyticum, AnGL27 AnGL27_0082066-134
FD-MS-7-8, AnGL9 AnGL9_0278863-138
FD-YE-37-9-3, AnGL29 AnGL29_0151064-138
Methylobacterium radiotolerans, GTSA1 PaGL#34_063975-76
PaGL#34_0177477-152
PaGL#34_0202166-139
PaGL#34_0256568-140
PaGL#34_0519769-141
PaGL#34_0606073-147
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0073877-149
PaGL#35_0081575-145
PaGL#35_0275790-147
PaGL#35_0303083-158
Syntrophomonas erecta, GB-438 Ga0610585_0070067-141
Variovorax sp., EBFNA2 PaGL#33_0092685-159
PaGL#33_0131371-145
PaGL#33_0137869-142
PaGL#33_0156169-144
PaGL#33_0377576-139
PaGL#33_0380180-154
PaGL#33_0392174-148
PaGL#33_0418569-135
PaGL#33_0468170-144
PaGL#33_0546171-147
PaGL#33_0551069-144
PaGL#33_0587577-152
PaGL#33_0589969-143
PaGL#33_0592268-143
Variovorax paradoxus, 2u118 PaGL#32_0529974-148
PaGL#32_0562268-142
PaGL#32_0623773-141
PaGL#32_0627073-146
PaGL#32_0093975-149
PaGL#32_0210780-154
PaGL#32_0214175-138
PaGL#32_0271275-150
PaGL#32_0368169-135
PaGL#32_0405769-144
PaGL#32_0472871-147
PaGL#32_0478471-146
PaGL#32_0508585-160
PaGL#32_0510969-143
PaGL#32_0512968-143
Dietzia cinnamea, 55 PaGL#56_0225872-143
PaGL#56_032847-77
Maridesulfovibrio salexigens, AnGL23 AnGL23_0033172-143
AnGL23_0194981-142
AnGL23_0200583-143
Exiguobacterium mexicanum, AnGL24 AnGL24_0206469-143
AnGL24_0251887-134
Priestia megaterium, 10L1 PaGL#57_0260471-144
PaGL#57_0363568-135
PaGL#57_0667173-133
PaGL#57_0693987-135
Variovorax paradoxus, SPNA7 PaGL#43_0561268-142
PaGL#43_0618373-141
PaGL#43_0622673-146
PaGL#43_0079169-143
PaGL#43_0093075-149
PaGL#43_0221780-154
PaGL#43_0240175-138
PaGL#43_0372169-135
PaGL#43_0421969-144
PaGL#43_0487171-147
PaGL#43_0493071-146
PaGL#43_0528185-160
PaGL#43_0530569-143
PaGL#43_0533168-143
Methanospirillum lacunae, Ki8-1 MLKi8_0091067-142
Geodermatophilus sp., RDM14 PaGL#36_0180175-138
PaGL#36_018599-76
PaGL#36_0231591-154
PaGL#36_0258475-143
PaGL#36_0262469-138
PaGL#36_033075-75
PaGL#36_0365476-137
PaGL#36_0385052-112
PaGL#36_0413070-140
Methylorubrum populi, CTY4 PaGL#39_0197666-139
PaGL#39_0251567-135
PaGL#39_033375-76
Fictibacillus phosphorivorans, TY7 PaGL#38_0411469-142
PaGL#38_0449880-150
Methanospirillum hungatei, GP1 MhGP1_0091367-142
Methanospirillum stamsii, Pt1 MLKi8_0116668-142
Syntrophomonas wolfei, saponavida Swsap_0274066-141
Bacillus subtilis, 30VD-1 PaGL#66_0069478-148
PaGL#66_0117071-144
PaGL#66_0168472-145
PaGL#66_0352768-131
PaGL#66_0367069-134
PaGL#66_0376369-135
Peribacillus frigoritolerans, 30N-5 PaGL#67_0074571-144
PaGL#67_0122467-134
PaGL#67_0128472-127
PaGL#67_0276170-123
PaGL#67_0456669-136
PaGL#67_0456872-132
PaGL#67_0467378-148
Micromonospora inositola, Utrum1 PaGL#61_0013778-140
PaGL#61_0053173-138
PaGL#61_0074379-137
PaGL#61_0118591-159
PaGL#61_016265-74
PaGL#61_0204768-137
PaGL#61_0380473-137
PaGL#61_0422968-139
PaGL#61_0434090-159
PaGL#61_0524779-154
PaGL#61_054115-76
PaGL#61_0587879-130
PaGL#61_0674376-145
Sphingomonas sp., CR2A3 PaGL#62_0017267-140
PaGL#62_0062969-142
PaGL#62_0163850-124
PaGL#62_0279075-144
PaGL#62_0293667-140
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_0017766-134
AnGL54_0274882-150
Niallia taxi, AG-1 PaGL#37_0411472-119
PaGL#37_0023474-147
PaGL#37_0439181-151
PaGL#37_0216672-132
PaGL#37_0320378-148
PaGL#37_0321671-145
Methanospirillum.hungatei GP1, MhGP1 8064048662:MhGP1_0198967-142
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_112:Mhun_0000267-142
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_11225:Spalm_0180867-141
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_111270:Swol_0124467-141
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_127156:Szehn_0161566-141
Syntrophus aciditrophicus, SB 637858745:SYN_004035-77
Syntrophus gentianae, DSM8423 Ga0074853_12230:Sgen_0251874-143
Ga0074853_10498:Sgen_007345-76
Mucilaginibacter gossypii, cycad 4 PaGL#42_0104180-153
PaGL#42_0128670-145
PaGL#42_0164171-144
PaGL#42_0277786-147
PaGL#42_0522077-149
Ruminococcus callidus, ATCC 27760 Rcal_0101364-138
Rcal_0160168-134
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