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PaGL#43_01526 Locus tags: • Sequence Length: 987

Variovorax paradoxus, SPNA7 Batch3_genome_fasta/V.paradoxus.SPNA7

505010010015015020020025025030030035035040040045045050050055055060060065065070070075075080080085085090090095095010001000
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PaGL#43_01521 PaGL#43_01522 PaGL#43_01524 PaGL#43_01526 PaGL#43_01527 PaGL#43_01529 
    [PF02739]_[PF01367]_[PF01612]_[PF00476]

    [6:PF02739]_[172:PF01367]_[343:PF01612]_[562:PF00476]

    [3:IPR029060]_[3:IPR002421]_[6:IPR020046]_[172:IPR020045]_[172:IPR036279]_[174:IPR008918]_[174:IPR020045]_[343:IPR002562]_[343:IPR002562]_[346:IPR012337]_[534:IPR043502]_[562:IPR001098]_[666:IPR002298]_[689:IPR002298]_[697:IPR001098]_[711:IPR002298]_[741:IPR002298]_[765:IPR002298]_[802:IPR002298]_[824:IPR002298]_[856:IPR002298]_[886:IPR002298]

Looking for similar signatures in the working genomes

PF02739:5_3_exonuc_N. 5'-3' exonuclease, N-terminal resolvase-like domain

Found 77 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003517221.1:LOMAGDGF_013814-174
Clostridium acetobutylicum, DSM 1731 WP_010964413.1:FHOCHPCF_011543-169
Acetivibrio alkalicellulosi, DSM 17461 2510064132:NJMEOJLD_043014-172
Pseudobacteroides cellulosolvens, DSM 2933 NEIHKHHH_004844-176
Ruminococcus albus_7, DSM 20455 WP_013497036.1:HCIAFFOI_002961-166
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_112157:GJLLLGJL_021124-170
Paenibacillus guangzhouensis, KCTC 33171 WP_152394609.1:KDFAKKPF_034432-169
WP_265333550.1:KDFAKKPF_036246-170
Clostridium acetobutylicum, ATCC 824 WP_010964413.1:OJAMHIDJ_011573-169
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137696667.1:PROKKA_015982-174
Syntrophomonas erecta, DSM 16215 OINOEOOJ_018035-170
FD_25_22, AnGL7 AnGL7_008414-167
AnGL7_031638-170
FD_25_27, AnGL8 AnGL8_016884-177
AnGL8_030418-170
FD_MS_7_1, AnGL28 AnGL28_022853-171
FD_SO4_25_1_F22, AnGL30 AnGL30_010626-177
FD_SO4_37_1, AnGL2 AnGL2_014143-171
FD_YE_25_21, AnGL21 AnGL21_000788-170
AnGL21_006913-161
FD_YE_37_3, AnGL26 AnGL26_0195910-177
FD_YE_37_8_2, AnGL3 AnGL3_020757-174
FD_YE_37_9_2, AnGL4 AnGL4_033862-170
Syntrophus buswellii, Sbus Sbus_0202414-176
Syntrophomonas curvata, Scurva Scurva_006204-170
Syntrophomonas erecta sporosyntropha, Sespor Sespor_018345-170
Syntrophomonas wolfei methylbutyratica, Swm Swm_024134-170
Terrisporobacter hibernicus, AnGL54 AnGL54_024814-169
FD-25-21, AnGL21 AnGL21_017574-167
AnGL21_030748-170
Sunxiuqinia elliptica, AnGL22 AnGL22_0195610-177
Paraclostridium benzoelyticum, AnGL27 AnGL27_012614-169
AnGL27_0168087-260
FD-MS-7-8, AnGL9 AnGL9_018123-171
FD-YE-37-9-3, AnGL29 AnGL29_006442-170
Methylobacterium radiotolerans, GTSA1 PaGL#34_0386224-184
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_002602-170
Syntrophomonas erecta, GB-438 Ga0610585_018035-170
Variovorax sp., EBFNA2 PaGL#33_017316-171
Variovorax paradoxus, 2u118 PaGL#32_015326-172
PaGL#32_0284847-141
Dietzia cinnamea, 55 PaGL#56_0135325-196
PaGL#56_015485-174
Maridesulfovibrio salexigens, AnGL23 AnGL23_0026313-166
Exiguobacterium mexicanum, AnGL24 AnGL24_002643-158
AnGL24_014551-157
AnGL24_019772-166
Clostridium subterminale, CB-LS10-1 AnGL53_0218210-176
Priestia megaterium, 10L1 PaGL#57_004460-149
PaGL#57_005514-176
PaGL#57_027883-170
PaGL#57_054634-177
Variovorax paradoxus, SPNA7 PaGL#43_015266-171
Geodermatophilus sp., RDM14 PaGL#36_0201223-192
PaGL#36_023170-173
Methylorubrum populi, CTY4 PaGL#39_0217318-180
Fictibacillus phosphorivorans, TY7 PaGL#38_025006-179
PaGL#38_035326-173
Syntrophomonas wolfei, saponavida Swsap_006555-171
Bacillus subtilis, 30VD-1 PaGL#66_014305-172
PaGL#66_020974-173
Peribacillus frigoritolerans, 30N-5 PaGL#67_018703-170
PaGL#67_0247821-171
Micromonospora inositola, Utrum1 PaGL#61_0290414-188
PaGL#61_052366-175
Sphingomonas sp., CR2A3 PaGL#62_027142-170
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_032854-169
Niallia taxi, AG-1 PaGL#37_024618-156
PaGL#37_029543-170
MPOB, Sfum 639702379:Sfum_016617-170
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_10237:Spalm_003191-127
Ga0128340_103135:Spalm_0066030-178
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_112157:Swol_021124-170
Syntrophus aciditrophicus, SB 637858893:SYN_0054914-176
Syntrophus gentianae, DSM8423 Ga0074853_1366:Sgen_0301814-176
Mucilaginibacter gossypii, cycad 4 PaGL#42_046162-163
Ruminococcus callidus, ATCC 27760 Rcal_009251-166

PF01367:5_3_exonuc. 5'-3' exonuclease, C-terminal SAM fold

Found 75 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003517221.1:LOMAGDGF_01381174-270
Clostridium acetobutylicum, DSM 1731 WP_010964413.1:FHOCHPCF_01154169-262
Acetivibrio alkalicellulosi, DSM 17461 2510064132:NJMEOJLD_04301173-269
Pseudobacteroides cellulosolvens, DSM 2933 NEIHKHHH_00484176-272
Ruminococcus albus_7, DSM 20455 WP_013497036.1:HCIAFFOI_00296166-262
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_112157:GJLLLGJL_02112170-265
Paenibacillus guangzhouensis, KCTC 33171 WP_152394609.1:KDFAKKPF_03443170-261
WP_265333550.1:KDFAKKPF_03624177-266
Clostridium acetobutylicum, ATCC 824 WP_010964413.1:OJAMHIDJ_01157169-262
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137696667.1:PROKKA_01598174-264
Syntrophomonas erecta, DSM 16215 OINOEOOJ_01803171-266
FD_25_22, AnGL7 AnGL7_00841167-259
AnGL7_03163170-271
FD_25_27, AnGL8 AnGL8_01688177-267
AnGL8_03041170-272
FD_MS_7_1, AnGL28 AnGL28_02285176-263
FD_SO4_25_1_F22, AnGL30 AnGL30_01062180-273
FD_SO4_37_1, AnGL2 AnGL2_01414176-263
FD_YE_25_21, AnGL21 AnGL21_00078170-272
AnGL21_00691164-255
FD_YE_37_3, AnGL26 AnGL26_01959181-273
FD_YE_37_8_2, AnGL3 AnGL3_02075178-270
FD_YE_37_9_2, AnGL4 AnGL4_03386171-262
Syntrophus buswellii, Sbus Sbus_02024176-272
Syntrophomonas curvata, Scurva Scurva_00620171-267
Syntrophomonas erecta sporosyntropha, Sespor Sespor_01834171-266
Syntrophomonas wolfei methylbutyratica, Swm Swm_02413170-265
Terrisporobacter hibernicus, AnGL54 AnGL54_02481171-265
FD-25-21, AnGL21 AnGL21_01757168-259
AnGL21_03074170-271
Sunxiuqinia elliptica, AnGL22 AnGL22_01956181-273
Paraclostridium benzoelyticum, AnGL27 AnGL27_01261171-264
AnGL27_01680297-404
FD-MS-7-8, AnGL9 AnGL9_01812176-265
FD-YE-37-9-3, AnGL29 AnGL29_00644171-262
Methylobacterium radiotolerans, GTSA1 PaGL#34_03862208-302
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_00260175-266
Syntrophomonas erecta, GB-438 Ga0610585_01803171-266
Variovorax sp., EBFNA2 PaGL#33_01731172-256
Variovorax paradoxus, 2u118 PaGL#32_01532172-256
Dietzia cinnamea, 55 PaGL#56_01353196-289
PaGL#56_01548184-258
Maridesulfovibrio salexigens, AnGL23 AnGL23_00263177-270
Exiguobacterium mexicanum, AnGL24 AnGL24_00264194-294
AnGL24_01455160-255
AnGL24_01977169-262
Clostridium subterminale, CB-LS10-1 AnGL53_02182176-268
Priestia megaterium, 10L1 PaGL#57_00446168-252
PaGL#57_00551178-266
PaGL#57_02788170-264
PaGL#57_05463178-261
Variovorax paradoxus, SPNA7 PaGL#43_01526172-256
Geodermatophilus sp., RDM14 PaGL#36_02012193-287
PaGL#36_02317175-263
Methylorubrum populi, CTY4 PaGL#39_02173202-296
Fictibacillus phosphorivorans, TY7 PaGL#38_02500179-274
PaGL#38_03532173-268
Syntrophomonas wolfei, saponavida Swsap_00655172-267
Bacillus subtilis, 30VD-1 PaGL#66_01430173-268
PaGL#66_02097174-262
Peribacillus frigoritolerans, 30N-5 PaGL#67_01870171-266
PaGL#67_02478190-281
Micromonospora inositola, Utrum1 PaGL#61_02904188-282
PaGL#61_05236175-270
Sphingomonas sp., CR2A3 PaGL#62_02714170-263
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_03285171-265
Niallia taxi, AG-1 PaGL#37_02461177-264
PaGL#37_02954171-266
MPOB, Sfum 639702379:Sfum_01661170-261
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_10237:Spalm_00319161-261
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_112157:Swol_02112170-265
Syntrophus aciditrophicus, SB 637858893:SYN_00549176-272
Syntrophus gentianae, DSM8423 Ga0074853_1366:Sgen_03018176-272
Mucilaginibacter gossypii, cycad 4 PaGL#42_04616175-267
Ruminococcus callidus, ATCC 27760 Rcal_00925168-261

PF01612:DNA_pol_A_exo1. 3'-5' exonuclease

Found 68 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003517221.1:LOMAGDGF_01381337-456
Clostridium acetobutylicum, DSM 1731 WP_010964413.1:FHOCHPCF_01154344-435
WP_010965213.1:FHOCHPCF_0195119-172
Acetivibrio alkalicellulosi, DSM 17461 2510064132:NJMEOJLD_04301336-453
Clostridium acetobutylicum, ATCC 824 WP_010964413.1:OJAMHIDJ_01157344-435
WP_010965213.1:OJAMHIDJ_0195919-172
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137696667.1:PROKKA_01598347-482
FD_25_22, AnGL7 AnGL7_020834-168
AnGL7_03163326-521
FD_25_27, AnGL8 AnGL8_022672-171
AnGL8_03041328-515
FD_MS_7_1, AnGL28 AnGL28_0135630-194
AnGL28_02285336-517
FD_SO4_25_1_F22, AnGL30 AnGL30_01062346-527
AnGL30_0221325-196
FD_SO4_37_1, AnGL2 AnGL2_0048530-194
AnGL2_01414336-517
FD_YE_25_21, AnGL21 AnGL21_00078331-519
AnGL21_008412-170
FD_YE_37_3, AnGL26 AnGL26_01959343-514
AnGL26_0419524-188
FD_YE_37_8_2, AnGL3 AnGL3_0069622-186
AnGL3_02075336-515
Syntrophus buswellii, Sbus Sbus_009338-174
Sbus_02024304-488
Syntrophomonas wolfei methylbutyratica, Swm Swm_02413308-436
Terrisporobacter hibernicus, AnGL54 AnGL54_02481357-445
FD-25-21, AnGL21 AnGL21_004483-168
AnGL21_03074326-521
Sunxiuqinia elliptica, AnGL22 AnGL22_01956343-514
AnGL22_0419124-188
Paraclostridium benzoelyticum, AnGL27 AnGL27_01261295-429
FD-MS-7-8, AnGL9 AnGL9_0166027-194
AnGL9_01812336-517
Methylobacterium radiotolerans, GTSA1 PaGL#34_006742-170
PaGL#34_03862432-640
PaGL#34_0563518-171
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_00260341-522
Variovorax sp., EBFNA2 PaGL#33_01731345-530
PaGL#33_0203139-206
Variovorax paradoxus, 2u118 PaGL#32_01532343-530
PaGL#32_0168331-199
Dietzia cinnamea, 55 PaGL#56_0171119-186
PaGL#56_0332623-178
Maridesulfovibrio salexigens, AnGL23 AnGL23_0313229-194
Variovorax paradoxus, SPNA7 PaGL#43_01526343-530
PaGL#43_0167331-199
Geodermatophilus sp., RDM14 PaGL#36_0286973-236
Methylorubrum populi, CTY4 PaGL#39_02173425-630
PaGL#39_0219923-173
PaGL#39_026261-170
Micromonospora inositola, Utrum1 PaGL#61_0190954-219
Sphingomonas sp., CR2A3 PaGL#62_009456-173
PaGL#62_02714311-506
PaGL#62_0293319-171
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_03285357-445
MPOB, Sfum 639701169:Sfum_004264-170
639702379:Sfum_01661311-491
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_11815:Szehn_0096217-197
Ga0124040_12848:Szehn_017077-197
Ga0124040_13957:Szehn_022838-195
Syntrophus aciditrophicus, SB 637858893:SYN_00549372-444
SYN_0243512-179
Syntrophus gentianae, DSM8423 Ga0074853_1366:Sgen_03018310-442
Ga0074853_10377:Sgen_005027-174
Mucilaginibacter gossypii, cycad 4 PaGL#42_04616342-522
Ruminococcus callidus, ATCC 27760 Rcal_0140258-239
Rcal_0185818-197

PF00476:DNA_pol_A. DNA polymerase family A

Found 89 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003517221.1:LOMAGDGF_01381515-892
Clostridium acetobutylicum, DSM 1731 WP_010964413.1:FHOCHPCF_01154493-869
Acetivibrio alkalicellulosi, DSM 17461 2510064132:NJMEOJLD_04301514-891
Pseudobacteroides cellulosolvens, DSM 2933 NEIHKHHH_00485106-483
WP_010244674.1:NEIHKHHH_04394223-614
Ruminococcus albus_7, DSM 20455 WP_013497036.1:HCIAFFOI_00296481-852
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_112157:GJLLLGJL_02112488-864
Paenibacillus guangzhouensis, KCTC 33171 WP_152394609.1:KDFAKKPF_03443509-885
Clostridium acetobutylicum, ATCC 824 WP_010964413.1:OJAMHIDJ_01157493-869
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137696667.1:PROKKA_01598515-891
WP_137699127.1:PROKKA_03109222-609
Syntrophomonas erecta, DSM 16215 OINOEOOJ_00814218-608
OINOEOOJ_01726225-488
OINOEOOJ_01803489-864
OINOEOOJ_01956240-612
FD_25_22, AnGL7 AnGL7_02105317-653
AnGL7_03163554-932
FD_25_27, AnGL8 AnGL8_03041547-924
FD_MS_7_1, AnGL28 AnGL28_02285550-926
FD_SO4_25_1_F22, AnGL30 AnGL30_01062558-935
FD_SO4_37_1, AnGL2 AnGL2_01414550-926
FD_YE_25_21, AnGL21 AnGL21_00078553-928
FD_YE_37_3, AnGL26 AnGL26_01959546-925
FD_YE_37_8_2, AnGL3 AnGL3_02075547-925
FD_YE_37_9_2, AnGL4 AnGL4_03386509-884
Syntrophus buswellii, Sbus Sbus_02024521-895
Syntrophomonas curvata, Scurva Scurva_00361236-610
Scurva_00620487-864
Syntrophomonas erecta sporosyntropha, Sespor Sespor_00199218-608
Sespor_01295227-636
Sespor_01640225-615
Sespor_01672240-612
Sespor_01834489-864
Sespor_01910231-617
Syntrophomonas wolfei methylbutyratica, Swm Swm_00308225-615
Swm_02413488-864
Terrisporobacter hibernicus, AnGL54 AnGL54_04606223-455
AnGL54_02481506-882
FD-25-21, AnGL21 AnGL21_03074555-932
Sunxiuqinia elliptica, AnGL22 AnGL22_01956546-925
Paraclostridium benzoelyticum, AnGL27 AnGL27_01261496-872
FD-MS-7-8, AnGL9 AnGL9_01812550-926
FD-YE-37-9-3, AnGL29 AnGL29_00644509-884
Methylobacterium radiotolerans, GTSA1 PaGL#34_03862672-1054
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_00260554-932
Syntrophomonas erecta, GB-438 Ga0610585_00814218-608
Ga0610585_01726225-488
Ga0610585_01803489-864
Ga0610585_01956240-612
Variovorax sp., EBFNA2 PaGL#33_01731562-937
Variovorax paradoxus, 2u118 PaGL#32_01532562-937
PaGL#32_02846259-458
498-632
Dietzia cinnamea, 55 PaGL#56_01353543-923
Maridesulfovibrio salexigens, AnGL23 AnGL23_00263513-882
Exiguobacterium mexicanum, AnGL24 AnGL24_01977488-862
Clostridium subterminale, CB-LS10-1 AnGL53_02182504-880
Priestia megaterium, 10L1 PaGL#57_02788497-873
Variovorax paradoxus, SPNA7 PaGL#43_01526562-937
Geodermatophilus sp., RDM14 PaGL#36_02012536-911
PaGL#36_02507225-543
Methylorubrum populi, CTY4 PaGL#39_02173662-1044
Fictibacillus phosphorivorans, TY7 PaGL#38_03532501-877
Syntrophomonas wolfei, saponavida Swsap_00655488-864
Bacillus subtilis, 30VD-1 PaGL#66_01430501-878
Peribacillus frigoritolerans, 30N-5 PaGL#67_01870497-871
Micromonospora inositola, Utrum1 PaGL#61_05055208-533
PaGL#61_05236519-895
Sphingomonas sp., CR2A3 PaGL#62_02714540-920
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_01435223-455
AnGL54_03285506-882
Niallia taxi, AG-1 PaGL#37_02954497-871
MPOB, Sfum 639702379:Sfum_01661523-899
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_0066132-401
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_112157:Swol_02112488-864
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_11815:Szehn_00962237-634
Ga0124040_12848:Szehn_01707235-634
Ga0124040_13957:Szehn_02283235-634
Syntrophus aciditrophicus, SB 637858893:SYN_00549523-898
Syntrophus gentianae, DSM8423 Ga0074853_1366:Sgen_03018519-895
Mucilaginibacter gossypii, cycad 4 PaGL#42_04616554-932
Ruminococcus callidus, ATCC 27760 Rcal_00925476-857
Rcal_014010-129
538-622
Rcal_01402334-454
Rcal_01537249-459
Rcal_01696244-632
Rcal_01755280-622
Rcal_01858235-633
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