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PaGL#36_02869 Locus tags: • Sequence Length: 477

Geodermatophilus sp., RDM14 Batch4_genome_fasta/bc2014

5050100100150150200200250250300300350350400400450450500500
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PaGL#36_02866 PaGL#36_02867 PaGL#36_02869 PaGL#36_02870 PaGL#36_02871 PaGL#36_02873 PaGL#36_02874 
    [PF01612]_[PF00570]_[PF18305]

    [73:PF01612]_[278:PF00570]_[365:PF18305]

    [59:IPR012337]_[70:IPR002562]_[73:IPR002562]_[258:IPR010997]_[275:IPR002121]_[275:IPR002121]_[278:IPR002121]_[365:IPR041605]

Looking for similar signatures in the working genomes

PF01612:DNA_pol_A_exo1. 3'-5' exonuclease

Found 68 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003517221.1:LOMAGDGF_01381337-456
Clostridium acetobutylicum, DSM 1731 WP_010964413.1:FHOCHPCF_01154344-435
WP_010965213.1:FHOCHPCF_0195119-172
Acetivibrio alkalicellulosi, DSM 17461 2510064132:NJMEOJLD_04301336-453
Clostridium acetobutylicum, ATCC 824 WP_010964413.1:OJAMHIDJ_01157344-435
WP_010965213.1:OJAMHIDJ_0195919-172
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137696667.1:PROKKA_01598347-482
FD_25_22, AnGL7 AnGL7_020834-168
AnGL7_03163326-521
FD_25_27, AnGL8 AnGL8_022672-171
AnGL8_03041328-515
FD_MS_7_1, AnGL28 AnGL28_0135630-194
AnGL28_02285336-517
FD_SO4_25_1_F22, AnGL30 AnGL30_01062346-527
AnGL30_0221325-196
FD_SO4_37_1, AnGL2 AnGL2_0048530-194
AnGL2_01414336-517
FD_YE_25_21, AnGL21 AnGL21_00078331-519
AnGL21_008412-170
FD_YE_37_3, AnGL26 AnGL26_01959343-514
AnGL26_0419524-188
FD_YE_37_8_2, AnGL3 AnGL3_0069622-186
AnGL3_02075336-515
Syntrophus buswellii, Sbus Sbus_009338-174
Sbus_02024304-488
Syntrophomonas wolfei methylbutyratica, Swm Swm_02413308-436
Terrisporobacter hibernicus, AnGL54 AnGL54_02481357-445
FD-25-21, AnGL21 AnGL21_004483-168
AnGL21_03074326-521
Sunxiuqinia elliptica, AnGL22 AnGL22_01956343-514
AnGL22_0419124-188
Paraclostridium benzoelyticum, AnGL27 AnGL27_01261295-429
FD-MS-7-8, AnGL9 AnGL9_0166027-194
AnGL9_01812336-517
Methylobacterium radiotolerans, GTSA1 PaGL#34_006742-170
PaGL#34_03862432-640
PaGL#34_0563518-171
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_00260341-522
Variovorax sp., EBFNA2 PaGL#33_01731345-530
PaGL#33_0203139-206
Variovorax paradoxus, 2u118 PaGL#32_01532343-530
PaGL#32_0168331-199
Dietzia cinnamea, 55 PaGL#56_0171119-186
PaGL#56_0332623-178
Maridesulfovibrio salexigens, AnGL23 AnGL23_0313229-194
Variovorax paradoxus, SPNA7 PaGL#43_01526343-530
PaGL#43_0167331-199
Geodermatophilus sp., RDM14 PaGL#36_0286973-236
Methylorubrum populi, CTY4 PaGL#39_02173425-630
PaGL#39_0219923-173
PaGL#39_026261-170
Micromonospora inositola, Utrum1 PaGL#61_0190954-219
Sphingomonas sp., CR2A3 PaGL#62_009456-173
PaGL#62_02714311-506
PaGL#62_0293319-171
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_03285357-445
MPOB, Sfum 639701169:Sfum_004264-170
639702379:Sfum_01661311-491
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_11815:Szehn_0096217-197
Ga0124040_12848:Szehn_017077-197
Ga0124040_13957:Szehn_022838-195
Syntrophus aciditrophicus, SB 637858893:SYN_00549372-444
SYN_0243512-179
Syntrophus gentianae, DSM8423 Ga0074853_1366:Sgen_03018310-442
Ga0074853_10377:Sgen_005027-174
Mucilaginibacter gossypii, cycad 4 PaGL#42_04616342-522
Ruminococcus callidus, ATCC 27760 Rcal_0140258-239
Rcal_0185818-197

PF00570:HRDC. HRDC domain

Found 83 similar signatures
Clostridium acetobutylicum, DSM 1731 WP_010965975.1:FHOCHPCF_02739519-581
Acetivibrio alkalicellulosi, DSM 17461 2510060324:NJMEOJLD_00573634-700
2510061692:NJMEOJLD_01908100-165
Pseudobacteroides cellulosolvens, DSM 2933 WP_242857086.1:NEIHKHHH_05469632-698
Ruminococcus albus_7, DSM 20455 WP_013499530.1:HCIAFFOI_03044538-602
Paenibacillus guangzhouensis, KCTC 33171 WP_152394767.1:KDFAKKPF_03621106-172
WP_152394844.1:KDFAKKPF_03711519-584
Clostridium acetobutylicum, ATCC 824 WP_010965975.1:OJAMHIDJ_02747519-581
Syntrophomonas erecta, DSM 16215 OINOEOOJ_01778517-583
FD_25_22, AnGL7 AnGL7_00197531-596
AnGL7_02083210-276
FD_25_27, AnGL8 AnGL8_02267212-279
AnGL8_03083557-624
FD_MS_7_1, AnGL28 AnGL28_01939537-604
FD_SO4_25_1_F22, AnGL30 AnGL30_00736532-597
AnGL30_01745670-737
FD_SO4_37_1, AnGL2 AnGL2_01068537-604
FD_YE_25_21, AnGL21 AnGL21_00841212-279
AnGL21_03079537-604
FD_YE_37_3, AnGL26 AnGL26_01046636-701
AnGL26_01393533-599
FD_YE_37_8_2, AnGL3 AnGL3_01333632-698
AnGL3_01631530-597
FD_YE_37_9_2, AnGL4 AnGL4_02288539-606
Syntrophus buswellii, Sbus Sbus_00933217-282
Sbus_02575495-561
Syntrophomonas curvata, Scurva Scurva_00668517-583
Syntrophomonas erecta sporosyntropha, Sespor Sespor_01859517-583
Terrisporobacter hibernicus, AnGL54 AnGL54_01565523-588
622-688
FD-25-21, AnGL21 AnGL21_00448210-276
AnGL21_02422531-596
Sunxiuqinia elliptica, AnGL22 AnGL22_01048636-701
AnGL22_01395533-599
Paraclostridium benzoelyticum, AnGL27 AnGL27_02212516-581
614-681
FD-MS-7-8, AnGL9 AnGL9_01844518-585
FD-YE-37-9-3, AnGL29 AnGL29_03013539-606
Methylobacterium radiotolerans, GTSA1 PaGL#34_00674213-280
PaGL#34_01298536-603
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_00586519-584
PaGL#35_03583536-603
PaGL#35_03964578-645
Syntrophomonas erecta, GB-438 Sere_1744517-583
Variovorax sp., EBFNA2 PaGL#33_00206567-632
Variovorax paradoxus, 2u118 PaGL#32_00173617-682
Dietzia cinnamea, 55 PaGL#56_00988644-711
PaGL#56_01711228-296
Maridesulfovibrio salexigens, AnGL23 AnGL23_00972539-606
Clostridium subterminale, CB-LS10-1 AnGL53_01435517-583
630-697
Priestia megaterium, 10L1 PaGL#57_05197517-584
Variovorax paradoxus, SPNA7 PaGL#43_00165564-629
Methanospirillum lacunae, Ki8-1 MLKi8_00865519-586
Geodermatophilus sp., RDM14 PaGL#36_02869278-337
PaGL#36_03537604-670
Methylorubrum populi, CTY4 PaGL#39_00005537-604
PaGL#39_02626213-280
Fictibacillus phosphorivorans, TY7 PaGL#38_00789518-583
Methanospirillum stamsii, Pt1 MLKi8_01080559-626
Bacillus subtilis, 30VD-1 PaGL#66_02211517-583
Peribacillus frigoritolerans, 30N-5 PaGL#67_02806515-582
Micromonospora inositola, Utrum1 PaGL#61_01909263-330
PaGL#61_05196545-610
PaGL#61_06184625-692
Sphingomonas sp., CR2A3 PaGL#62_00945216-272
PaGL#62_02738517-582
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_02371523-588
622-688
Niallia taxi, AG-1 PaGL#37_01885516-582
Methanospirillum.hungatei GP1, MhGP1 8064048738:MhGP1_02064526-593
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_113397:Mhun_03391526-593
MPOB, Sfum 639701169:Sfum_00426216-268
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_11877:Szehn_00337516-584
Syntrophus aciditrophicus, SB 637858521:SYN_00203532-599
SYN_02435223-290
Syntrophus gentianae, DSM8423 Ga0074853_10377:Sgen_00502217-281
Ga0074853_101199:Sgen_00198495-561
Mucilaginibacter gossypii, cycad 4 PaGL#42_00512624-690
PaGL#42_02156536-603
PaGL#42_05197524-590
Ruminococcus callidus, ATCC 27760 Rcal_00658540-606

PF18305:DNA_pol_A_exoN. 3' to 5' exonuclease C-terminal domain

Found 3 similar signatures
Dietzia cinnamea, 55 PaGL#56_01711317-404
Geodermatophilus sp., RDM14 PaGL#36_02869365-451
Micromonospora inositola, Utrum1 PaGL#61_01909348-435
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