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PaGL#66_00025 Locus tags: • Sequence Length: 329

Bacillus subtilis, 30VD-1 Batch4_genome_fasta/bc2033

5050100100150150200200250250300300350350
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PaGL#66_00020 PaGL#66_00021 PaGL#66_00022 PaGL#66_00023 PaGL#66_00025 PaGL#66_00030 
    [PF01193]_[PF01000]_[PF03118]

    [25:PF01193]_[58:PF01000]_[239:PF03118]

    [4:IPR036603]_[19:IPR011263]_[25:IPR011263]_[49:IPR036643]_[58:IPR011262]_[239:IPR011260]

Looking for similar signatures in the working genomes

PF01193:RNA_pol_L. RNA polymerase Rpb3/Rpb11 dimerisation domain

Found 71 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003514679.1:LOMAGDGF_0049025-221
Clostridium acetobutylicum, DSM 1731 WP_010966385.1:FHOCHPCF_0315025-221
Acetivibrio alkalicellulosi, DSM 17461 2510061267:NJMEOJLD_0149625-221
Pseudobacteroides cellulosolvens, DSM 2933 WP_036945050.1:NEIHKHHH_0254025-221
Ruminococcus albus_7, DSM 20455 WP_013496822.1:HCIAFFOI_0006626-224
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_112465:GJLLLGJL_0241925-220
Paenibacillus guangzhouensis, KCTC 33171 WP_152395402.1:KDFAKKPF_0438425-221
Clostridium acetobutylicum, ATCC 824 WP_010966385.1:OJAMHIDJ_0315925-221
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697986.1:PROKKA_0074525-221
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0241525-220
FD_25_22, AnGL7 AnGL7_0242428-225
AnGL7_0351828-227
FD_25_27, AnGL8 AnGL8_0130728-228
FD_MS_7_1, AnGL28 AnGL28_0284130-226
FD_SO4_25_1_F22, AnGL30 AnGL30_0092327-225
FD_SO4_37_1, AnGL2 AnGL2_0197030-226
FD_YE_25_21, AnGL21 AnGL21_0284528-229
FD_YE_37_3, AnGL26 AnGL26_0110527-224
FD_YE_37_8_2, AnGL3 AnGL3_0140027-224
FD_YE_37_9_2, AnGL4 AnGL4_0239425-225
Syntrophus buswellii, Sbus Sbus_0049731-226
Syntrophomonas curvata, Scurva Scurva_0277825-220
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0110225-220
Syntrophomonas wolfei methylbutyratica, Swm Swm_0280325-220
Terrisporobacter hibernicus, AnGL54 AnGL54_0331025-221
FD-25-21, AnGL21 AnGL21_0024528-225
AnGL21_0275428-227
Sunxiuqinia elliptica, AnGL22 AnGL22_0110727-224
Paraclostridium benzoelyticum, AnGL27 AnGL27_0077825-221
FD-MS-7-8, AnGL9 AnGL9_0303021-217
FD-YE-37-9-3, AnGL29 AnGL29_0311925-225
Methylobacterium radiotolerans, GTSA1 PaGL#34_0244532-228
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0587127-225
Syntrophomonas erecta, GB-438 Ga0610585_0241525-220
Variovorax sp., EBFNA2 PaGL#33_0577625-224
Variovorax paradoxus, 2u118 PaGL#32_0503425-224
Dietzia cinnamea, 55 PaGL#56_0231723-218
Maridesulfovibrio salexigens, AnGL23 AnGL23_0201739-235
Exiguobacterium mexicanum, AnGL24 AnGL24_0294625-221
Clostridium subterminale, CB-LS10-1 AnGL53_0332225-221
Priestia megaterium, 10L1 PaGL#57_0210025-221
PaGL#57_0140130-222
Variovorax paradoxus, SPNA7 PaGL#43_0523025-224
Methanospirillum lacunae, Ki8-1 MLKi8_0049312-84
MLKi8_0166813-258
Geodermatophilus sp., RDM14 PaGL#36_0376023-217
Methylorubrum populi, CTY4 PaGL#39_0192132-228
Fictibacillus phosphorivorans, TY7 PaGL#38_0054925-221
Methanospirillum hungatei, GP1 MhGP1_0071412-83
MhGP1_0130513-258
Methanospirillum stamsii, Pt1 MLKi8_0096613-83
MLKi8_0158913-258
Syntrophomonas wolfei, saponavida Swsap_0093725-220
Bacillus subtilis, 30VD-1 PaGL#66_0002525-221
Peribacillus frigoritolerans, 30N-5 PaGL#67_0011125-221
Micromonospora inositola, Utrum1 PaGL#61_0638623-218
Sphingomonas sp., CR2A3 PaGL#62_0351333-229
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_0014625-221
Niallia taxi, AG-1 PaGL#37_0016425-221
Methanospirillum.hungatei GP1, MhGP1 8064048259:MhGP1_0159813-258
8064048862:MhGP1_0218812-83
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_11462:Mhun_0046013-258
Ga0065338_113329:Mhun_0332612-83
MPOB, Sfum 639702349:Sfum_0163130-226
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_12633:Spalm_0272325-220
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_112465:Swol_0241925-220
Syntrophomonas zehnderi, OL-4 Szehn Szehn_0031325-220
Syntrophus aciditrophicus, SB 637858636:SYN_0030531-226
Syntrophus gentianae, DSM8423 Ga0074853_10253:Sgen_0026431-226
Mucilaginibacter gossypii, cycad 4 PaGL#42_0589427-225
Ruminococcus callidus, ATCC 27760 Rcal_0015027-223

PF01000:RNA_pol_A_bac. RNA polymerase Rpb3/RpoA insert domain

Found 66 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003514679.1:LOMAGDGF_0049058-152
Clostridium acetobutylicum, DSM 1731 WP_010966385.1:FHOCHPCF_0315058-151
Acetivibrio alkalicellulosi, DSM 17461 2510061267:NJMEOJLD_0149658-152
Pseudobacteroides cellulosolvens, DSM 2933 WP_036945050.1:NEIHKHHH_0254058-152
Ruminococcus albus_7, DSM 20455 WP_013496822.1:HCIAFFOI_0006657-153
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_112465:GJLLLGJL_0241958-151
Paenibacillus guangzhouensis, KCTC 33171 WP_152395402.1:KDFAKKPF_0438455-151
Clostridium acetobutylicum, ATCC 824 WP_010966385.1:OJAMHIDJ_0315958-151
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697986.1:PROKKA_0074558-152
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0241558-152
FD_25_22, AnGL7 AnGL7_0242460-155
AnGL7_0351859-155
FD_25_27, AnGL8 AnGL8_0130761-156
FD_MS_7_1, AnGL28 AnGL28_0284166-157
FD_SO4_25_1_F22, AnGL30 AnGL30_0092359-156
FD_SO4_37_1, AnGL2 AnGL2_0197066-157
FD_YE_25_21, AnGL21 AnGL21_0284561-156
FD_YE_37_3, AnGL26 AnGL26_0110557-155
FD_YE_37_8_2, AnGL3 AnGL3_0140059-156
FD_YE_37_9_2, AnGL4 AnGL4_0239455-155
Syntrophus buswellii, Sbus Sbus_0049763-157
Syntrophomonas curvata, Scurva Scurva_0277856-152
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0110258-152
Syntrophomonas wolfei methylbutyratica, Swm Swm_0280358-151
Terrisporobacter hibernicus, AnGL54 AnGL54_0331058-152
FD-25-21, AnGL21 AnGL21_0024560-155
AnGL21_0275459-155
Sunxiuqinia elliptica, AnGL22 AnGL22_0110757-155
Paraclostridium benzoelyticum, AnGL27 AnGL27_0077858-152
FD-MS-7-8, AnGL9 AnGL9_0303057-148
FD-YE-37-9-3, AnGL29 AnGL29_0311955-155
Methylobacterium radiotolerans, GTSA1 PaGL#34_0244562-159
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0587161-156
Syntrophomonas erecta, GB-438 Ga0610585_0241558-152
Variovorax sp., EBFNA2 PaGL#33_0577660-150
Variovorax paradoxus, 2u118 PaGL#32_0503460-150
Dietzia cinnamea, 55 PaGL#56_0231755-149
Maridesulfovibrio salexigens, AnGL23 AnGL23_0201772-166
Exiguobacterium mexicanum, AnGL24 AnGL24_0294655-152
Clostridium subterminale, CB-LS10-1 AnGL53_0332258-151
Priestia megaterium, 10L1 PaGL#57_0210055-152
PaGL#57_0140159-152
Variovorax paradoxus, SPNA7 PaGL#43_0523060-150
Methanospirillum lacunae, Ki8-1 MLKi8_0166844-152
Geodermatophilus sp., RDM14 PaGL#36_0376056-149
Methylorubrum populi, CTY4 PaGL#39_0192162-159
Fictibacillus phosphorivorans, TY7 PaGL#38_0054955-152
Methanospirillum hungatei, GP1 MhGP1_0130543-152
Methanospirillum stamsii, Pt1 MLKi8_0158943-152
Syntrophomonas wolfei, saponavida Swsap_0093759-152
Bacillus subtilis, 30VD-1 PaGL#66_0002558-152
Peribacillus frigoritolerans, 30N-5 PaGL#67_0011158-151
Micromonospora inositola, Utrum1 PaGL#61_0638656-150
Sphingomonas sp., CR2A3 PaGL#62_0351363-159
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_0014658-152
Niallia taxi, AG-1 PaGL#37_0016458-152
Methanospirillum.hungatei GP1, MhGP1 8064048259:MhGP1_0159843-152
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_11462:Mhun_0046043-152
MPOB, Sfum 639702349:Sfum_0163164-157
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_12633:Spalm_0272353-152
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_112465:Swol_0241958-151
Syntrophomonas zehnderi, OL-4 Szehn Szehn_0031358-152
Syntrophus aciditrophicus, SB 637858636:SYN_0030563-157
Syntrophus gentianae, DSM8423 Ga0074853_10253:Sgen_0026463-157
Mucilaginibacter gossypii, cycad 4 PaGL#42_0589461-156
Ruminococcus callidus, ATCC 27760 Rcal_0015057-153

PF03118:RNA_pol_A_CTD. Bacterial RNA polymerase, alpha chain C terminal domain

Found 63 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003514679.1:LOMAGDGF_00490239-304
Clostridium acetobutylicum, DSM 1731 WP_010966385.1:FHOCHPCF_03150239-304
Acetivibrio alkalicellulosi, DSM 17461 2510061267:NJMEOJLD_01496239-304
Pseudobacteroides cellulosolvens, DSM 2933 WP_036945050.1:NEIHKHHH_02540239-304
Ruminococcus albus_7, DSM 20455 WP_013496822.1:HCIAFFOI_00066244-307
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_112465:GJLLLGJL_02419240-306
Paenibacillus guangzhouensis, KCTC 33171 WP_152395402.1:KDFAKKPF_04384239-305
Clostridium acetobutylicum, ATCC 824 WP_010966385.1:OJAMHIDJ_03159239-304
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697986.1:PROKKA_00745239-304
Syntrophomonas erecta, DSM 16215 OINOEOOJ_02415240-305
FD_25_22, AnGL7 AnGL7_02424245-305
AnGL7_03518243-307
FD_25_27, AnGL8 AnGL8_01307244-308
FD_MS_7_1, AnGL28 AnGL28_02841248-313
FD_SO4_25_1_F22, AnGL30 AnGL30_00923251-312
FD_SO4_37_1, AnGL2 AnGL2_01970248-313
FD_YE_25_21, AnGL21 AnGL21_02845245-309
FD_YE_37_3, AnGL26 AnGL26_01105250-311
FD_YE_37_8_2, AnGL3 AnGL3_01400250-311
FD_YE_37_9_2, AnGL4 AnGL4_02394243-309
Syntrophus buswellii, Sbus Sbus_00497249-314
Syntrophomonas curvata, Scurva Scurva_02778240-306
Syntrophomonas erecta sporosyntropha, Sespor Sespor_01102240-305
Syntrophomonas wolfei methylbutyratica, Swm Swm_02803240-306
Terrisporobacter hibernicus, AnGL54 AnGL54_03310239-305
FD-25-21, AnGL21 AnGL21_00245245-305
AnGL21_02754243-307
Sunxiuqinia elliptica, AnGL22 AnGL22_01107250-311
Paraclostridium benzoelyticum, AnGL27 AnGL27_00778239-305
FD-MS-7-8, AnGL9 AnGL9_03030239-304
FD-YE-37-9-3, AnGL29 AnGL29_03119243-309
Methylobacterium radiotolerans, GTSA1 PaGL#34_02445252-310
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_05871248-312
Syntrophomonas erecta, GB-438 Ga0610585_02415240-305
Variovorax sp., EBFNA2 PaGL#33_05776250-308
Variovorax paradoxus, 2u118 PaGL#32_05034250-308
Dietzia cinnamea, 55 PaGL#56_02317243-302
Maridesulfovibrio salexigens, AnGL23 AnGL23_02017255-317
Exiguobacterium mexicanum, AnGL24 AnGL24_02946239-305
Clostridium subterminale, CB-LS10-1 AnGL53_03322239-304
Priestia megaterium, 10L1 PaGL#57_02100239-305
PaGL#57_01401242-306
Variovorax paradoxus, SPNA7 PaGL#43_05230250-308
Geodermatophilus sp., RDM14 PaGL#36_03760243-302
Methylorubrum populi, CTY4 PaGL#39_01921252-310
Fictibacillus phosphorivorans, TY7 PaGL#38_00549239-305
PaGL#38_0168017-61
Syntrophomonas wolfei, saponavida Swsap_00937240-306
Bacillus subtilis, 30VD-1 PaGL#66_00025239-305
Peribacillus frigoritolerans, 30N-5 PaGL#67_00111239-305
PaGL#67_0501942-89
Micromonospora inositola, Utrum1 PaGL#61_06386243-302
Sphingomonas sp., CR2A3 PaGL#62_03513265-325
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_00146239-305
Niallia taxi, AG-1 PaGL#37_00164239-305
MPOB, Sfum 639702349:Sfum_01631249-309
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_12633:Spalm_02723240-306
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_112465:Swol_02419240-306
Syntrophomonas zehnderi, OL-4 Szehn Szehn_00313240-306
Syntrophus aciditrophicus, SB 637858636:SYN_00305251-316
Syntrophus gentianae, DSM8423 Ga0074853_10253:Sgen_00264249-314
Mucilaginibacter gossypii, cycad 4 PaGL#42_05894248-312
Ruminococcus callidus, ATCC 27760 Rcal_00150242-306
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