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MLKi8_00893 Locus tags: • Sequence Length: 534

Methanospirillum stamsii, Pt1 Batch4_genome_fasta/bc2029

5050100100150150200200250250300300350350400400450450500500550550
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MLKi8_00888 MLKi8_00889 MLKi8_00890 MLKi8_00891 MLKi8_00892 MLKi8_00893 MLKi8_00894 MLKi8_00895 MLKi8_00896 MLKi8_00897 MLKi8_00898 
    [PF00329]_[PF00333]_[PF03719]_[PF00374]_[PF00346]

    [33:PF00329]_[49:PF00333]_[134:PF03719]_[193:PF00374]_[266:PF00346]

    [9:IPR037232]_[33:IPR001268]_[48:IPR013810]_[49:IPR013810]_[126:IPR020568]_[134:IPR005324]_[160:IPR029014]_[193:IPR001501]_[266:IPR001135]

Looking for similar signatures in the working genomes

PF00329:Complex1_30kDa. Respiratory-chain NADH dehydrogenase, 30 Kd subunit

Found 48 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003514861.1:LOMAGDGF_005928-98
Pseudobacteroides cellulosolvens, DSM 2933 WP_036935082.1:NEIHKHHH_0501623-93
WP_036943340.1:NEIHKHHH_0511831-151
Paenibacillus guangzhouensis, KCTC 33171 WP_227793357.1:KDFAKKPF_05496199-314
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137696069.1:PROKKA_0197451-152
WP_137698905.1:PROKKA_0362510-92
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0035732-144
Syntrophomonas curvata, Scurva Scurva_0153330-142
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0064832-144
Methylobacterium radiotolerans, GTSA1 PaGL#34_0227746-167
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0283931-157
PaGL#35_0638835-154
Syntrophomonas erecta, GB-438 Ga0610585_0035732-144
Variovorax sp., EBFNA2 PaGL#33_0411034-164
Variovorax paradoxus, 2u118 PaGL#32_0361134-164
Dietzia cinnamea, 55 PaGL#56_00390117-239
Maridesulfovibrio salexigens, AnGL23 AnGL23_0174532-138
AnGL23_0388116-115
Variovorax paradoxus, SPNA7 PaGL#43_0365035-164
Methanospirillum lacunae, Ki8-1 MLKi8_0004027-134
MLKi8_0089333-116
MLKi8_0342513-100
Geodermatophilus sp., RDM14 PaGL#36_0383798-226
Methylorubrum populi, CTY4 PaGL#39_0090252-171
Fictibacillus phosphorivorans, TY7 PaGL#38_04564299-414
Methanospirillum hungatei, GP1 MhGP1_0016116-95
MhGP1_0023225-135
MhGP1_0154344-161
Methanospirillum stamsii, Pt1 MLKi8_0046814-94
MLKi8_0053329-138
MLKi8_0189144-161
Syntrophomonas wolfei, saponavida Swsap_0179426-139
Peribacillus frigoritolerans, 30N-5 PaGL#67_00464326-441
Micromonospora inositola, Utrum1 PaGL#61_00575103-225
PaGL#61_0645834-153
Sphingomonas sp., CR2A3 PaGL#62_0081238-159
Methanospirillum.hungatei GP1, MhGP1 8064048017:MhGP1_0135944-161
8064049357:MhGP1_0267025-135
8064049427:MhGP1_0274116-95
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_11127:Mhun_0012844-161
Ga0065338_112713:Mhun_0270917-95
Ga0065338_112789:Mhun_0278529-139
MPOB, Sfum 639700955:Sfum_0021434-143
639702710:Sfum_01998255-381
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_11370:Szehn_0091732-147
Syntrophus gentianae, DSM8423 Ga0074853_12416:Sgen_0259527-149
Mucilaginibacter gossypii, cycad 4 PaGL#42_0246732-156
PaGL#42_0346735-154

PF00333:Ribosomal_S5. Ribosomal protein S5, N-terminal domain

Found 63 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003514656.1:LOMAGDGF_0047810-75
Clostridium acetobutylicum, DSM 1731 WP_010966395.1:FHOCHPCF_031619-73
Acetivibrio alkalicellulosi, DSM 17461 2510061255:NJMEOJLD_0148410-75
Pseudobacteroides cellulosolvens, DSM 2933 WP_036945060.1:NEIHKHHH_0255210-75
Ruminococcus albus_7, DSM 20455 WP_013496812.1:HCIAFFOI_0005411-75
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_112476:GJLLLGJL_0243112-75
Paenibacillus guangzhouensis, KCTC 33171 WP_018759696.1:KDFAKKPF_043959-74
Clostridium acetobutylicum, ATCC 824 WP_010966395.1:OJAMHIDJ_031709-73
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697977.1:PROKKA_0073311-76
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0240410-75
FD_25_22, AnGL7 AnGL7_0352611-75
FD_25_27, AnGL8 AnGL8_0129912-76
FD_MS_7_1, AnGL28 AnGL28_0284934-98
FD_SO4_25_1_F22, AnGL30 AnGL30_0093312-77
FD_SO4_37_1, AnGL2 AnGL2_0197834-98
FD_YE_25_21, AnGL21 AnGL21_0285313-77
FD_YE_37_3, AnGL26 AnGL26_0111414-79
FD_YE_37_8_2, AnGL3 AnGL3_0141015-80
FD_YE_37_9_2, AnGL4 AnGL4_0238212-77
Syntrophus buswellii, Sbus Sbus_0048811-75
Syntrophomonas curvata, Scurva Scurva_0279010-75
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0111310-75
Syntrophomonas wolfei methylbutyratica, Swm Swm_0281412-75
Terrisporobacter hibernicus, AnGL54 AnGL54_0329912-77
FD-25-21, AnGL21 AnGL21_0274611-75
Sunxiuqinia elliptica, AnGL22 AnGL22_0111614-79
Paraclostridium benzoelyticum, AnGL27 AnGL27_0076613-78
FD-MS-7-8, AnGL9 AnGL9_0303934-98
FD-YE-37-9-3, AnGL29 AnGL29_0310712-77
Methylobacterium radiotolerans, GTSA1 PaGL#34_0245523-86
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0588115-80
Syntrophomonas erecta, GB-438 Ga0610585_0240410-75
Variovorax sp., EBFNA2 PaGL#33_0578416-79
Variovorax paradoxus, 2u118 PaGL#32_0504216-80
Dietzia cinnamea, 55 PaGL#56_0232853-116
Maridesulfovibrio salexigens, AnGL23 AnGL23_020257-72
Exiguobacterium mexicanum, AnGL24 AnGL24_0295610-75
Clostridium subterminale, CB-LS10-1 AnGL53_033349-74
Priestia megaterium, 10L1 PaGL#57_0211010-75
Variovorax paradoxus, SPNA7 PaGL#43_0523816-80
Methanospirillum lacunae, Ki8-1 MLKi8_0042449-113
Geodermatophilus sp., RDM14 PaGL#36_0377137-101
Methylorubrum populi, CTY4 PaGL#39_0192920-83
Fictibacillus phosphorivorans, TY7 PaGL#38_005389-74
Methanospirillum hungatei, GP1 MhGP1_0064449-113
Methanospirillum stamsii, Pt1 MLKi8_0089349-113
Syntrophomonas wolfei, saponavida Swsap_0094710-75
Bacillus subtilis, 30VD-1 PaGL#66_0003512-77
Peribacillus frigoritolerans, 30N-5 PaGL#67_0011910-75
Micromonospora inositola, Utrum1 PaGL#61_0639838-101
Sphingomonas sp., CR2A3 PaGL#62_0350063-128
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_0013512-77
Niallia taxi, AG-1 PaGL#37_0015612-77
Methanospirillum.hungatei GP1, MhGP1 8064048935:MhGP1_0225849-113
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_113221:Mhun_0321849-113
MPOB, Sfum 639702339:Sfum_0162111-75
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_12619:Spalm_0270912-75
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_112476:Swol_0243112-75
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_118113:Szehn_0106012-75
Syntrophus aciditrophicus, SB 637858627:SYN_0029612-75
Syntrophus gentianae, DSM8423 Sgen_0027211-75
Mucilaginibacter gossypii, cycad 4 PaGL#42_0588415-80
Ruminococcus callidus, ATCC 27760 Rcal_0013810-75

PF03719:Ribosomal_S5_C. Ribosomal protein S5, C-terminal domain

Found 63 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003514656.1:LOMAGDGF_0047886-157
Clostridium acetobutylicum, DSM 1731 WP_010966395.1:FHOCHPCF_0316185-156
Acetivibrio alkalicellulosi, DSM 17461 2510061255:NJMEOJLD_0148486-157
Pseudobacteroides cellulosolvens, DSM 2933 WP_036945060.1:NEIHKHHH_0255286-157
Ruminococcus albus_7, DSM 20455 WP_013496812.1:HCIAFFOI_0005487-158
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_112476:GJLLLGJL_0243188-158
Paenibacillus guangzhouensis, KCTC 33171 WP_018759696.1:KDFAKKPF_0439585-156
Clostridium acetobutylicum, ATCC 824 WP_010966395.1:OJAMHIDJ_0317085-156
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697977.1:PROKKA_0073387-158
Syntrophomonas erecta, DSM 16215 OINOEOOJ_0240487-158
FD_25_22, AnGL7 AnGL7_0352687-158
FD_25_27, AnGL8 AnGL8_0129988-159
FD_MS_7_1, AnGL28 AnGL28_02849110-178
FD_SO4_25_1_F22, AnGL30 AnGL30_0093388-159
FD_SO4_37_1, AnGL2 AnGL2_01978110-178
FD_YE_25_21, AnGL21 AnGL21_0285389-160
FD_YE_37_3, AnGL26 AnGL26_0111490-161
FD_YE_37_8_2, AnGL3 AnGL3_0141091-162
FD_YE_37_9_2, AnGL4 AnGL4_0238289-160
Syntrophus buswellii, Sbus Sbus_0048886-157
Syntrophomonas curvata, Scurva Scurva_0279087-158
Syntrophomonas erecta sporosyntropha, Sespor Sespor_0111387-158
Syntrophomonas wolfei methylbutyratica, Swm Swm_0281488-158
Terrisporobacter hibernicus, AnGL54 AnGL54_0329988-159
FD-25-21, AnGL21 AnGL21_0274687-158
Sunxiuqinia elliptica, AnGL22 AnGL22_0111690-161
Paraclostridium benzoelyticum, AnGL27 AnGL27_0076689-160
FD-MS-7-8, AnGL9 AnGL9_03039110-178
FD-YE-37-9-3, AnGL29 AnGL29_0310789-160
Methylobacterium radiotolerans, GTSA1 PaGL#34_0245599-170
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0588191-162
Syntrophomonas erecta, GB-438 Ga0610585_0240487-158
Variovorax sp., EBFNA2 PaGL#33_0578492-163
Variovorax paradoxus, 2u118 PaGL#32_0504292-163
Dietzia cinnamea, 55 PaGL#56_02328127-198
Maridesulfovibrio salexigens, AnGL23 AnGL23_0202583-153
Exiguobacterium mexicanum, AnGL24 AnGL24_0295686-157
Clostridium subterminale, CB-LS10-1 AnGL53_0333485-156
Priestia megaterium, 10L1 PaGL#57_0211086-157
Variovorax paradoxus, SPNA7 PaGL#43_0523892-163
Methanospirillum lacunae, Ki8-1 MLKi8_00424135-197
Geodermatophilus sp., RDM14 PaGL#36_03771112-183
Methylorubrum populi, CTY4 PaGL#39_0192996-167
Fictibacillus phosphorivorans, TY7 PaGL#38_0053885-156
Methanospirillum hungatei, GP1 MhGP1_00644134-197
Methanospirillum stamsii, Pt1 MLKi8_00893134-197
Syntrophomonas wolfei, saponavida Swsap_0094787-158
Bacillus subtilis, 30VD-1 PaGL#66_0003588-159
Peribacillus frigoritolerans, 30N-5 PaGL#67_0011986-157
Micromonospora inositola, Utrum1 PaGL#61_06398115-183
Sphingomonas sp., CR2A3 PaGL#62_03500140-211
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_0013588-159
Niallia taxi, AG-1 PaGL#37_0015688-159
Methanospirillum.hungatei GP1, MhGP1 8064048935:MhGP1_02258134-197
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_113221:Mhun_03218134-197
MPOB, Sfum 639702339:Sfum_0162186-157
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_027100-47
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_112476:Swol_0243188-158
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_118113:Szehn_0106087-158
Syntrophus aciditrophicus, SB 637858627:SYN_0029686-157
Syntrophus gentianae, DSM8423 Sgen_0027286-157
Mucilaginibacter gossypii, cycad 4 PaGL#42_0588491-162
Ruminococcus callidus, ATCC 27760 Rcal_0013886-157

PF00374:NiFeSe_Hases. Nickel-dependent hydrogenase

Found 93 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003514863.1:LOMAGDGF_0059142-112
Clostridium acetobutylicum, DSM 1731 WP_010890826.1:FHOCHPCF_0394238-119
125-323
329-456
Acetivibrio alkalicellulosi, DSM 17461 2510059989:NJMEOJLD_0025138-118
128-455
Pseudobacteroides cellulosolvens, DSM 2933 WP_036937425.1:NEIHKHHH_0429038-118
128-333
342-469
WP_036935085.1:NEIHKHHH_0501541-111
Clostridium acetobutylicum, ATCC 824 WP_010890826.1:OJAMHIDJ_0395538-119
125-323
329-456
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137698906.1:PROKKA_0362441-111
FD_25_22, AnGL7 AnGL7_0125951-129
285-462
FD_YE_25_21, AnGL21 AnGL21_0359742-128
267-422
AnGL21_0019938-551
Syntrophus buswellii, Sbus Sbus_0229340-119
235-453
Syntrophomonas curvata, Scurva Scurva_0184637-123
127-474
Syntrophomonas wolfei methylbutyratica, Swm Swm_0122838-63
Swm_012296-355
Terrisporobacter hibernicus, AnGL54 AnGL54_0127237-123
132-323
329-457
FD-25-21, AnGL21 AnGL21_0130551-129
286-462
Variovorax paradoxus, 2u118 PaGL#32_0564837-119
242-485
PaGL#32_0566852-603
Maridesulfovibrio salexigens, AnGL23 AnGL23_0125750-129
134-487
AnGL23_0139058-554
AnGL23_0388041-110
Clostridium subterminale, CB-LS10-1 AnGL53_0223837-130
132-323
330-457
Variovorax paradoxus, SPNA7 PaGL#43_0563837-116
242-485
PaGL#43_0565852-603
Methanospirillum lacunae, Ki8-1 MLKi8_0049740-109
361-438
MLKi8_00893193-257
MLKi8_0342642-111
Methanospirillum hungatei, GP1 MhGP1_0016242-111
MhGP1_0054444-112
MhGP1_0071840-109
327-438
MhGP1_0154245-114
Methanospirillum stamsii, Pt1 MLKi8_0046942-111
MLKi8_0077744-112
MLKi8_0097040-109
339-438
MLKi8_0189045-114
Syntrophomonas wolfei, saponavida Swsap_0269638-118
124-467
Micromonospora inositola, Utrum1 PaGL#61_0378755-137
177-577
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_0200037-123
132-323
329-457
Methanospirillum.hungatei GP1, MhGP1 8064048018:MhGP1_0136045-114
MhGP1_0218440-109
327-438
8064049036:MhGP1_0235844-112
8064049426:MhGP1_0274042-111
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_11128:Mhun_0012945-114
Ga0065338_112714:Mhun_0271042-111
Ga0065338_113085:Mhun_0308444-112
Mhun_0332240-109
339-438
MPOB, Sfum 639702560:Sfum_0184039-118
340-420
639702987:Sfum_0228539-118
357-457
639703487:Sfum_0279239-117
267-454
639703724:Sfum_0303238-531
639704308:Sfum_0362058-137
357-444
639704727:Sfum_0404639-118
333-449
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_11352:Szehn_0089938-63
Szehn_009001-42
47-389
Syntrophus aciditrophicus, SB 637858427:SYN_0011442-125
256-433
Syntrophus gentianae, DSM8423 Ga0074853_11649:Sgen_0213539-542
Ga0074853_10641:Sgen_0103540-118
244-453

PF00346:Complex1_49kDa. Respiratory-chain NADH dehydrogenase, 49 Kd subunit

Found 80 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003514863.1:LOMAGDGF_00591118-282
286-359
Pseudobacteroides cellulosolvens, DSM 2933 WP_036935085.1:NEIHKHHH_05015118-281
285-358
WP_036943340.1:NEIHKHHH_05118297-449
455-523
Paenibacillus guangzhouensis, KCTC 33171 WP_152396328.1:KDFAKKPF_05497119-293
291-365
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137696069.1:PROKKA_01974298-451
459-526
WP_137698906.1:PROKKA_03624118-280
285-359
Syntrophomonas erecta, DSM 16215 OINOEOOJ_00358118-294
295-365
Syntrophomonas curvata, Scurva Scurva_01534122-297
299-369
Syntrophomonas erecta sporosyntropha, Sespor Sespor_00647118-294
295-365
Methylobacterium radiotolerans, GTSA1 PaGL#34_02276121-396
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_02819141-400
PaGL#35_06387129-402
Syntrophomonas erecta, GB-438 Ga0610585_00358118-294
295-365
Variovorax sp., EBFNA2 PaGL#33_04109119-417
Variovorax paradoxus, 2u118 PaGL#32_03610119-417
Dietzia cinnamea, 55 PaGL#56_00389155-441
Maridesulfovibrio salexigens, AnGL23 AnGL23_01744135-303
307-383
AnGL23_03880118-281
285-358
Variovorax paradoxus, SPNA7 PaGL#43_03649119-417
Methanospirillum lacunae, Ki8-1 MLKi8_00040286-438
MLKi8_00893266-509
MLKi8_03426119-283
286-359
Geodermatophilus sp., RDM14 PaGL#36_03836162-448
Methylorubrum populi, CTY4 PaGL#39_00901121-396
Fictibacillus phosphorivorans, TY7 PaGL#38_04563119-365
Methanospirillum hungatei, GP1 MhGP1_00162119-282
286-359
MhGP1_00232283-439
MhGP1_00544123-281
285-361
MhGP1_01542121-378
Methanospirillum stamsii, Pt1 MLKi8_00469119-282
286-359
MLKi8_00533276-442
MLKi8_00777123-281
286-361
MLKi8_01890121-378
Syntrophomonas wolfei, saponavida Swsap_01795119-295
296-366
Peribacillus frigoritolerans, 30N-5 PaGL#67_00465119-290
290-364
Micromonospora inositola, Utrum1 PaGL#61_00576155-441
PaGL#61_06786142-315
314-389
Sphingomonas sp., CR2A3 PaGL#62_00813137-409
Methanospirillum.hungatei GP1, MhGP1 8064048018:MhGP1_01360121-378
8064049036:MhGP1_02358123-281
285-361
8064049357:MhGP1_02670283-439
8064049426:MhGP1_02740119-282
286-359
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_11128:Mhun_00129121-378
Ga0065338_112714:Mhun_02710118-282
286-359
Ga0065338_112789:Mhun_02785278-445
443-518
Ga0065338_113085:Mhun_03084123-281
285-361
MPOB, Sfum 639700956:Sfum_00215126-295
297-373
639702710:Sfum_01998524-795
Syntrophomonas zehnderi, OL-4 Szehn Szehn_00918119-294
295-366
Syntrophus gentianae, DSM8423 Ga0074853_12418:Sgen_02597133-298
299-379
Mucilaginibacter gossypii, cycad 4 PaGL#42_02468141-400
PaGL#42_03466129-402
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